CX294185

Overview
NameCX294185
Unique NameCX294185
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length459
Libraries
Library NameType
AbsAOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CX294185_ssr338 microsatellite CX294185_ssr338:338..355. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig551 contig Ccv1_Contig551:1..459. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX294185 vs. ExPASy Swiss-Prot
Match: Y1574_AZOSB (UPF0061 protein azo1574 OS=Azoarcus sp. (strain BH72) GN=azo1574 PE=3 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 1.361e-17
Identity = 40/68 (58.82%), Postives = 50/68 (73.53%), Query Frame = 3
Query:   21 GISYEERKALMNSVNPKYVLRNYLCQSAIDAAELGDFGEVRRLLKLMERPYDEQPGMVRYARLPPAWA 224
            G+  ++R+A MN+ NP+YV+RNYL Q AIDAAE GD+G VR LL +M RPYDEQP    YA+  P WA
Sbjct:  439 GLDADQRRARMNAANPRYVMRNYLAQQAIDAAEQGDYGPVRSLLDVMRRPYDEQPERAAYAQRRPDWA 506          
BLAST of CX294185 vs. ExPASy Swiss-Prot
Match: Y558_PSEMY (UPF0061 protein Pmen_0558 OS=Pseudomonas mendocina (strain ymp) GN=Pmen_0558 PE=3 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 1.778e-17
Identity = 39/67 (58.21%), Postives = 50/67 (74.63%), Query Frame = 3
Query:   21 GISYEERKALMNSVNPKYVLRNYLCQSAIDAAELGDFGEVRRLLKLMERPYDEQPGMVRYARLPPAW 221
            G   +ER+A M++VNP Y+LRNYL Q  I+AAE GD+G VR L  ++ RP+DEQPGM RYA+ PP W
Sbjct:  411 GQQQDERRARMHAVNPLYILRNYLAQQVIEAAEAGDYGPVRELHAVLSRPFDEQPGMQRYAQRPPEW 477          
BLAST of CX294185 vs. ExPASy Swiss-Prot
Match: Y486_PSEF5 (UPF0061 protein PFL_0486 OS=Pseudomonas fluorescens (strain Pf-5 / ATCC BAA-477) GN=PFL_0486 PE=3 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 8.822e-17
Identity = 38/61 (62.30%), Postives = 48/61 (78.69%), Query Frame = 3
Query:   39 RKALMNSVNPKYVLRNYLCQSAIDAAELGDFGEVRRLLKLMERPYDEQPGMVRYARLPPAW 221
            R+A M++VNP Y+LRNYL Q AIDAAE GD+ EVRRL +++ RP++EQPGM  YA  PP W
Sbjct:  417 RRARMHAVNPLYILRNYLAQKAIDAAEAGDYSEVRRLHQVLSRPFEEQPGMDSYAERPPEW 477          
BLAST of CX294185 vs. ExPASy Swiss-Prot
Match: Y4511_AZOVD (UPF0061 protein Avin_45110 OS=Azotobacter vinelandii (strain DJ / ATCC BAA-1303) GN=Avin_45110 PE=3 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 8.822e-17
Identity = 38/61 (62.30%), Postives = 47/61 (77.05%), Query Frame = 3
Query:   39 RKALMNSVNPKYVLRNYLCQSAIDAAELGDFGEVRRLLKLMERPYDEQPGMVRYARLPPAW 221
            R+A M++VNPKY+LRNYL Q AI+AAE GD+  VR L  ++ RP+DEQPGM RYA  PP W
Sbjct:  417 RRARMHAVNPKYILRNYLAQQAIEAAERGDYSPVRELHAVLSRPFDEQPGMERYAERPPEW 477          
BLAST of CX294185 vs. ExPASy Swiss-Prot
Match: Y444_PSEPF (UPF0061 protein Pfl01_0444 OS=Pseudomonas fluorescens (strain Pf0-1) GN=Pfl01_0444 PE=3 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 8.822e-17
Identity = 38/63 (60.32%), Postives = 48/63 (76.19%), Query Frame = 3
Query:   33 EERKALMNSVNPKYVLRNYLCQSAIDAAELGDFGEVRRLLKLMERPYDEQPGMVRYARLPPAW 221
            E+R+A M++VNP Y+LRNYL Q AIDAAE GD+ EVRRL  ++  P++EQPGM  YA  PP W
Sbjct:  415 EQRRARMHAVNPLYILRNYLAQKAIDAAEQGDYSEVRRLHAVLSNPFEEQPGMESYAERPPEW 477          
BLAST of CX294185 vs. ExPASy Swiss-Prot
Match: Y3881_PSEU5 (UPF0061 protein PST_3881 OS=Pseudomonas stutzeri (strain A1501) GN=PST_3881 PE=3 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 1.152e-16
Identity = 38/61 (62.30%), Postives = 47/61 (77.05%), Query Frame = 3
Query:   39 RKALMNSVNPKYVLRNYLCQSAIDAAELGDFGEVRRLLKLMERPYDEQPGMVRYARLPPAW 221
            R+A M++VNPKY+LRNYL Q AI+AAE GD+  VR L  ++ RP+DEQPGM RYA  PP W
Sbjct:  416 RQARMHAVNPKYILRNYLAQQAIEAAEKGDYAPVRELHAVLSRPFDEQPGMERYAERPPEW 476          
BLAST of CX294185 vs. ExPASy Swiss-Prot
Match: Y5068_PSEPK (UPF0061 protein PP_5068 OS=Pseudomonas putida (strain KT2440) GN=PP_5068 PE=3 SV=2)

HSP 1 Score: 83.9593 bits (206), Expect = 3.352e-16
Identity = 38/63 (60.32%), Postives = 48/63 (76.19%), Query Frame = 3
Query:   33 EERKALMNSVNPKYVLRNYLCQSAIDAAELGDFGEVRRLLKLMERPYDEQPGMVRYARLPPAW 221
            E R+  M++VNP YVLRNYL Q AI+AAE GD+ EVRRL +++ RP++EQPGM  YA  PP W
Sbjct:  414 EGRRERMHAVNPLYVLRNYLAQKAIEAAEAGDYSEVRRLHQVLARPFEEQPGMQAYAERPPEW 476          
BLAST of CX294185 vs. ExPASy Swiss-Prot
Match: Y4941_PSEP1 (UPF0061 protein Pput_4941 OS=Pseudomonas putida (strain F1 / ATCC 700007) GN=Pput_4941 PE=3 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 3.352e-16
Identity = 38/63 (60.32%), Postives = 48/63 (76.19%), Query Frame = 3
Query:   33 EERKALMNSVNPKYVLRNYLCQSAIDAAELGDFGEVRRLLKLMERPYDEQPGMVRYARLPPAW 221
            E R+  M++VNP YVLRNYL Q AI+AAE GD+ EVRRL +++ RP++EQPGM  YA  PP W
Sbjct:  414 EGRRERMHAVNPLYVLRNYLAQKAIEAAEAGDYSEVRRLHQVLTRPFEEQPGMQAYAERPPEW 476          
BLAST of CX294185 vs. ExPASy Swiss-Prot
Match: Y369_PSEE4 (UPF0061 protein PSEEN0369 OS=Pseudomonas entomophila (strain L48) GN=PSEEN0369 PE=3 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 3.352e-16
Identity = 38/63 (60.32%), Postives = 47/63 (74.60%), Query Frame = 3
Query:   33 EERKALMNSVNPKYVLRNYLCQSAIDAAELGDFGEVRRLLKLMERPYDEQPGMVRYARLPPAW 221
            E R+  M +VNP YVLRNYL Q AI+AAE GD+ EVRRL +++ RP++EQPGM  YA  PP W
Sbjct:  414 EGRRERMQAVNPLYVLRNYLAQKAIEAAEAGDYSEVRRLHQVLSRPFEEQPGMQAYAERPPEW 476          
BLAST of CX294185 vs. ExPASy Swiss-Prot
Match: Y909_VIBPA (UPF0061 protein VP0909 OS=Vibrio parahaemolyticus GN=VP0909 PE=3 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 5.718e-16
Identity = 38/66 (57.58%), Postives = 44/66 (66.67%), Query Frame = 3
Query:   24 ISYEERKALMNSVNPKYVLRNYLCQSAIDAAELGDFGEVRRLLKLMERPYDEQPGMVRYARLPPAW 221
            IS E+R   M   NPKY+LRNYL Q AID AE GDF EV RL +++  PYD QP    YA+LPP W
Sbjct:  414 ISAEQRSEQMRQTNPKYILRNYLAQLAIDKAEEGDFSEVHRLAEILRHPYDSQPEFEAYAKLPPEW 479          
The following BLAST results are available for this feature:
BLAST of CX294185 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 83
Match NameE-valueIdentityDescription
Y1574_AZOSB1.361e-1758.82UPF0061 protein azo1574 OS=Azoarcus sp. (strain BH... [more]
Y558_PSEMY1.778e-1758.21UPF0061 protein Pmen_0558 OS=Pseudomonas mendocina... [more]
Y486_PSEF58.822e-1762.30UPF0061 protein PFL_0486 OS=Pseudomonas fluorescen... [more]
Y4511_AZOVD8.822e-1762.30UPF0061 protein Avin_45110 OS=Azotobacter vineland... [more]
Y444_PSEPF8.822e-1760.32UPF0061 protein Pfl01_0444 OS=Pseudomonas fluoresc... [more]
Y3881_PSEU51.152e-1662.30UPF0061 protein PST_3881 OS=Pseudomonas stutzeri (... [more]
Y5068_PSEPK3.352e-1660.32UPF0061 protein PP_5068 OS=Pseudomonas putida (str... [more]
Y4941_PSEP13.352e-1660.32UPF0061 protein Pput_4941 OS=Pseudomonas putida (s... [more]
Y369_PSEE43.352e-1660.32UPF0061 protein PSEEN0369 OS=Pseudomonas entomophi... [more]
Y909_VIBPA5.718e-1657.58UPF0061 protein VP0909 OS=Vibrio parahaemolyticus ... [more]

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Properties
Property NameValue
Genbank descriptionC05013B12SK AbsAOv1 Citrus clementina cDNA clone C05013B12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX294185 ID=CX294185; Name=CX294185; organism=Citrus clementina; type=EST; length=459bp
TACAAGAGCTGTTGTCTAGTGGCATCTCATATGAGGAAAGGAAGGCATTG
ATGAATTCTGTGAACCCAAAATATGTTCTTAGAAACTACTTGTGCCAGAG
TGCTATAGATGCAGCTGAGCTCGGAGATTTTGGGGAGGTGCGGAGGTTGC
TTAAACTTATGGAACGCCCATATGACGAGCAACCAGGAATGGTAAGGTAT
GCTCGCCTGCCCCCGGCATGGGCTTATCGACCAGGTGTTTGCATGCTTTC
CTGTTCATCGTAATCTGCCATTCTCTGCATTATGTTATACCTATACCAGA
AAGAGGATTGTAACTTCATGTATATAATAGTCGAATCATTATTATTATTA
TTATTTTTGTGGCTGCGGAAAAAAGTAGAAATAATTTGTATGGCATTATT
TCTTTGCAGAATTTTAACAGTTTATGCATTTCGAAATCATTTTATTTATT
ACAATTTTT
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