CX294248

Overview
NameCX294248
Unique NameCX294248
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length444
Libraries
Library NameType
AbsAOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig556 contig Ccv1_Contig556:11..454. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CX294248 vs. ExPASy Swiss-Prot
Match: PR4_PHAVU (Wound-induced basic protein OS=Phaseolus vulgaris GN=PR4 PE=2 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 2.124e-17
Identity = 40/47 (85.11%), Postives = 44/47 (93.62%), Query Frame = 2 
Query:   86 MIYDVNSPLFRSFLSQKGGASDKRKMEEQRPKEQRPKTNENKPVMTE 226
            MIYDVNSPLFRSFLSQKGG+SDKRK EEQ+PKE RPK +ENKP+MTE
Sbjct:    1 MIYDVNSPLFRSFLSQKGGSSDKRKTEEQKPKEHRPKASENKPIMTE 47
The following BLAST results are available for this feature:
BLAST of CX294248 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
PR4_PHAVU2.124e-1785.11Wound-induced basic protein OS=Phaseolus vulgaris ... [more]
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Properties
Property NameValue
Genbank descriptionC05014B05SK AbsAOv1 Citrus clementina cDNA clone C05014B05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX294248 ID=CX294248; Name=CX294248; organism=Citrus clementina; type=EST; length=444bp
TACGGCCGGGGAAATTAAGACGAAAACGGAACTAGGGTTTCTTTTTCCGA
TACAGGAATCCTACGGTGATAATTCATAATCAACAATGATCTACGACGTG
AACTCTCCTCTCTTCCGTTCCTTCCTCAGCCAGAAGGGCGGCGCTTCTGA
CAAGAGGAAAATGGAAGAGCAAAGGCCAAAAGAACAAAGACCCAAAACAA
ATGAGAACAAGCCTGTCATGACAGAGTGAGAGTTGCGTTTTGCTTGTAAT
GCTTCAGTGATGAGATAGAAGTAGTACGGTTCAGTGGTCACAGTCATCCA
AATGTAACTGATTCTGATTTTCCTTGGTTTATGGGTTTGTAGTGGTCTGT
GTTTGGATTTGGATGTTTCTTGTGGAACAAAAAATGTTTGGTAGTGCTAT
TATGCATTTAATATATTATTAAGGAAGCAGTGGTGTTGTATGAT
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