CX294260

Overview
NameCX294260
Unique NameCX294260
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length552
Libraries
Library NameType
AbsAOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of CX294260 vs. ExPASy Swiss-Prot
Match: HBPL1_ARATH (Heme-binding-like protein At3g10130, chloroplastic OS=Arabidopsis thaliana GN=At3g10130 PE=1 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 1.563e-15
Identity = 58/165 (35.15%), Postives = 87/165 (52.73%), Query Frame = 3 
Query:   30 VETPKYEVIQSTFDYEIRKYAPSVVAEVTYDPST----FKGNKDGGFSVLANYIGALGNPQNTKPEKIAMTAPVIT-KSSPEGEKIAMTAPVVT-KSDEKKMVTMQFVLPEKYQKAEEAPKPVDERVVIREEGQRKYGVVKFGGVASDEVVGEKVDKLKKSLEKD 506
            +ET  + V+  T  YEIR+  P  VAE      T    +  +K   F+VLA Y+      +NT  EK+ MT PV+T K    GEK+ MT PV+T K+ ++    M FV+P KY      P P D  V I++  ++   VV F G  +DE +  +  +L+++L+ D
Sbjct:  114 LETMNFRVLFRTDKYEIRQVEPYFVAETIMPGETGFDSYGASKS--FNVLAEYLFG----KNTIKEKMEMTTPVVTRKVQSVGEKMEMTTPVITSKAKDQNQWRMSFVMPSKY--GSNLPLPKDPSVKIQQVPRKIVAVVAFSGYVTDEEIERRERELRRALQND 270
The following BLAST results are available for this feature:
BLAST of CX294260 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
HBPL1_ARATH1.563e-1535.15Heme-binding-like protein At3g10130, chloroplastic... [more]
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Properties
Property NameValue
Genbank descriptionC05014C10SK AbsAOv1 Citrus clementina cDNA clone C05014C10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX294260 ID=CX294260; Name=CX294260; organism=Citrus clementina; type=EST; length=552bp
TACGGCCGGGGGTTTTTGGGAAAATCAGCGTTGAAACTCCAAAATATGAA
GTGATTCAATCAACCTTCGACTATGAAATCCGCAAATATGCGCCCTCAGT
TGTAGCAGAAGTCACATATGACCCGTCAACATTCAAGGGTAACAAGGATG
GAGGCTTTTCGGTGTTGGCAAATTACATCGGTGCATTAGGCAATCCGCAG
AACACCAAGCCTGAAAAGATTGCCATGACAGCTCCGGTGATAACAAAGTC
CTCACCTGAAGGGGAGAAGATTGCCATGACGGCTCCAGTGGTGACAAAGA
GTGATGAGAAGAAGATGGTGACAATGCAGTTTGTGTTGCCGGAGAAGTAT
CAGAAGGCGGAGGAGGCACCGAAGCCAGTGGATGAGAGGGTGGTGATAAG
AGAAGAGGGGCAGAGGAAATATGGGGTGGTGAAATTTGGAGGAGTTGCAT
CAGATGAAGTGGTGGGTGAGAAAGTTGATAAGCTGAAGAAAAGCTTGGAG
AAAGATGGGTATAAAGTTATTGGGCAGTTTTTACTGGCTAGGTATAACCA
CC
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