CX294350

Overview
NameCX294350
Unique NameCX294350
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length479
Libraries
Library NameType
FlavSen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig3655 contig Ccv1_Contig3655:48..525. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX294350 vs. ExPASy Swiss-Prot
Match: MSBP2_ARATH (Membrane steroid-binding protein 2 OS=Arabidopsis thaliana GN=MSBP2 PE=1 SV=1)

HSP 1 Score: 214.542 bits (545), Expect = 8.515e-66
Identity = 105/118 (88.98%), Postives = 110/118 (93.22%), Query Frame = 2
Query:  125 HQQRSREYEEQMEPLPPPVQLGEITEEELKQYDGSDSKKPLLMAIKSQIYDVSQSRMFYGPGGPYALFAGKDASRALAKMSFEEKDLTGDISGLGPFELEALQDWEYKFMSKYVKVGS 478
            H+ RS E + Q EPLPPPVQLGEITEEELK YDGSDSKKPLLMAIK QIYDVSQSRMFYGPGGPYALFAGKDASRALAKMSFE++DLTGDISGLG FELEALQDWEYKFMSKYVKVG+
Sbjct:   48 HRPRSLEVQPQSEPLPPPVQLGEITEEELKLYDGSDSKKPLLMAIKGQIYDVSQSRMFYGPGGPYALFAGKDASRALAKMSFEDQDLTGDISGLGAFELEALQDWEYKFMSKYVKVGT 165          

HSP 2 Score: 57.3806 bits (137), Expect = 8.515e-66
Identity = 27/35 (77.14%), Postives = 31/35 (88.57%), Query Frame = 1
Query:    1 TLKEAITAYTGLSPAAFFTVVALLWAIYYVLSGMF 105
            TLKE ITAYTGLSPAAFFTV+AL +A+Y V+SG F
Sbjct:    8 TLKETITAYTGLSPAAFFTVLALAFAVYQVVSGFF 42          
BLAST of CX294350 vs. ExPASy Swiss-Prot
Match: MSBP1_ARATH (Membrane steroid-binding protein 1 OS=Arabidopsis thaliana GN=MSBP1 PE=1 SV=2)

HSP 1 Score: 202.601 bits (514), Expect = 1.309e-60
Identity = 97/120 (80.83%), Postives = 107/120 (89.17%), Query Frame = 2
Query:  119 NHHQQRSREYEEQMEPLPPPVQLGEITEEELKQYDGSDSKKPLLMAIKSQIYDVSQSRMFYGPGGPYALFAGKDASRALAKMSFEEKDLTGDISGLGPFELEALQDWEYKFMSKYVKVGS 478
            N HQ+     +E+  P+P PVQ+GEITEEELKQYDGSD +KPLLMAIK QIYDV+QSRMFYGPGGPYALFAGKDASRALAKMSFEEKDLT D+SGLGPFEL+ALQDWEYKFMSKY KVG+
Sbjct:   50 NRHQRARSLAQEEEPPIPQPVQVGEITEEELKQYDGSDPQKPLLMAIKHQIYDVTQSRMFYGPGGPYALFAGKDASRALAKMSFEEKDLTWDVSGLGPFELDALQDWEYKFMSKYAKVGT 169          

HSP 2 Score: 51.9878 bits (123), Expect = 1.309e-60
Identity = 25/35 (71.43%), Postives = 28/35 (80.00%), Query Frame = 1
Query:    1 TLKEAITAYTGLSPAAFFTVVALLWAIYYVLSGMF 105
            TLKEAI AYTGLSP  FFT +AL +AIY V+SG F
Sbjct:    8 TLKEAIHAYTGLSPVVFFTALALAFAIYQVISGWF 42          
BLAST of CX294350 vs. ExPASy Swiss-Prot
Match: SBP3_ARATH (Probable steroid-binding protein 3 OS=Arabidopsis thaliana GN=MP3 PE=1 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 4.273e-23
Identity = 49/95 (51.58%), Postives = 67/95 (70.53%), Query Frame = 2
Query:  191 EITEEELKQYDGSDSKKPLLMAIKSQIYDVSQSRMFYGPGGPYALFAGKDASRALAKMSFEEKDLTGDISGLGPFELEALQDWEYKFMSKYVKVG 475
            E T E+L QY+G+D  KP+ +AIK +++DV+  + FYG GG Y++FAGKDASRAL KMS  E+D++  + GL   E+  L DWE KF +KY  VG
Sbjct:    2 EFTAEQLSQYNGTDESKPIYVAIKGRVFDVTTGKSFYGSGGDYSMFAGKDASRALGKMSKNEEDVSPSLEGLTEKEINTLNDWETKFEAKYPVVG 96          
BLAST of CX294350 vs. ExPASy Swiss-Prot
Match: NENF_RAT (Neudesin OS=Rattus norvegicus GN=Nenf PE=2 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 2.195e-19
Identity = 50/102 (49.02%), Postives = 67/102 (65.69%), Query Frame = 2
Query:  173 PPVQLGEITEEELKQYDGSDSKKPLLMAIKSQIYDVSQSRMFYGPGGPYALFAGKDASRALAKMSFEEKDLTGDISGLGPFELEALQD-WEYKFMSKYVKVG 475
            PPV+L   TEEEL +Y G +  +P+ +A+K  ++DV+  + FYG G PY   AGKD+SR +AKMS +  DLT DISGL   ELEAL D +   + +KY  VG
Sbjct:   41 PPVRL--FTEEELARYSGEEEDQPIYLAVKGVVFDVTSGKEFYGRGAPYNALAGKDSSRGVAKMSLDPADLTHDISGLTAKELEALDDIFSKVYKAKYPIVG 140          
BLAST of CX294350 vs. ExPASy Swiss-Prot
Match: NENF_MOUSE (Neudesin OS=Mus musculus GN=Nenf PE=1 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 2.426e-18
Identity = 48/102 (47.06%), Postives = 66/102 (64.71%), Query Frame = 2
Query:  173 PPVQLGEITEEELKQYDGSDSKKPLLMAIKSQIYDVSQSRMFYGPGGPYALFAGKDASRALAKMSFEEKDLTGDISGLGPFELEALQD-WEYKFMSKYVKVG 475
            PPV+L   TEEEL +Y G +  +P+ +A+K  ++DV+  + FYG G PY   AGKD+SR +AKMS +  DLT D +GL   ELEAL D +   + +KY  VG
Sbjct:   41 PPVRL--FTEEELARYGGEEEDQPIYLAVKGVVFDVTSGKEFYGRGAPYNALAGKDSSRGVAKMSLDPADLTHDTTGLTAKELEALDDVFSKVYKAKYPIVG 140          
BLAST of CX294350 vs. ExPASy Swiss-Prot
Match: PGRC1_RAT (Membrane-associated progesterone receptor component 1 OS=Rattus norvegicus GN=Pgrmc1 PE=1 SV=3)

HSP 1 Score: 88.9669 bits (219), Expect = 1.204e-17
Identity = 48/109 (44.04%), Postives = 68/109 (62.39%), Query Frame = 2
Query:  161 EPLP-PPVQLGEITEEELKQYDGSDSKKPLLMAIKSQIYDVSQSRMFYGPGGPYALFAGKDASRALAKMSFEE---KDLTGDISGLGPFELEALQDWEYKFMSKYVKVG 475
            EP P P ++  + T  EL++YDG    + +LMAI  +++DV++ R FYGP GPY +FAG+DASR LA    ++   KD   D+S L P + E L DW+ +F  KY  VG
Sbjct:   61 EPPPLPRLKPRDFTPAELRRYDGVQDPR-ILMAINGKVFDVTKGRKFYGPEGPYGVFAGRDASRGLATFCLDKEALKDEYDDLSDLTPAQQETLNDWDSQFTFKYHHVG 168          
BLAST of CX294350 vs. ExPASy Swiss-Prot
Match: PGRC1_PIG (Membrane-associated progesterone receptor component 1 OS=Sus scrofa GN=PGRMC1 PE=1 SV=3)

HSP 1 Score: 88.1965 bits (217), Expect = 2.054e-17
Identity = 46/119 (38.66%), Postives = 71/119 (59.66%), Query Frame = 2
Query:  128 QQRSREYEEQMEPLPPPVQLGEITEEELKQYDGSDSKKPLLMAIKSQIYDVSQSRMFYGPGGPYALFAGKDASRALAKMSFEE---KDLTGDISGLGPFELEALQDWEYKFMSKYVKVG 475
            Q  + + ++   P  P ++  + T  EL+++DG    + +LMAI  +++DV++ R FYGP GPY +FAG+DASR LA    ++   KD   D+S L P + E L DW+ +F  KY  VG
Sbjct:   50 QPAASDSDDDEPPPLPRLKRRDFTPAELRRFDGVQDPR-ILMAINGKVFDVTKGRKFYGPEGPYGVFAGRDASRGLATFCLDKEALKDEYDDLSDLTPAQQETLNDWDSQFTFKYHHVG 167          
BLAST of CX294350 vs. ExPASy Swiss-Prot
Match: PGRC1_BOVIN (Membrane-associated progesterone receptor component 1 OS=Bos taurus GN=PGRMC1 PE=2 SV=3)

HSP 1 Score: 88.1965 bits (217), Expect = 2.054e-17
Identity = 46/119 (38.66%), Postives = 71/119 (59.66%), Query Frame = 2
Query:  128 QQRSREYEEQMEPLPPPVQLGEITEEELKQYDGSDSKKPLLMAIKSQIYDVSQSRMFYGPGGPYALFAGKDASRALAKMSFEE---KDLTGDISGLGPFELEALQDWEYKFMSKYVKVG 475
            Q  + + ++   P  P ++  + T  EL+++DG    + +LMAI  +++DV++ R FYGP GPY +FAG+DASR LA    ++   KD   D+S L P + E L DW+ +F  KY  VG
Sbjct:   50 QPAASDSDDDEPPPLPRLKRRDFTPAELRRFDGVQDPR-ILMAINGKVFDVTKGRKFYGPEGPYGVFAGRDASRGLATFCLDKEALKDEYDDLSDLTPAQQETLSDWDSQFTFKYHHVG 167          
BLAST of CX294350 vs. ExPASy Swiss-Prot
Match: NENF_BOVIN (Neudesin OS=Bos taurus GN=NENF PE=2 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 2.054e-17
Identity = 46/102 (45.10%), Postives = 65/102 (63.73%), Query Frame = 2
Query:  173 PPVQLGEITEEELKQYDGSDSKKPLLMAIKSQIYDVSQSRMFYGPGGPYALFAGKDASRALAKMSFEEKDLTGDISGLGPFELEALQD-WEYKFMSKYVKVG 475
            PPV+L   TEEEL +Y G +  +P+ MA+K  ++DV+  + FYG G PY    GKD++R +AKMS +  DLT D +GL   ELE+L D +   + +KY  VG
Sbjct:   39 PPVRL--FTEEELARYGGEEEDQPIYMAVKGVVFDVTSGKEFYGRGAPYNALTGKDSTRGVAKMSLDPADLTHDTTGLTAEELESLDDVFTRVYKAKYPIVG 138          
BLAST of CX294350 vs. ExPASy Swiss-Prot
Match: PGRC1_MOUSE (Membrane-associated progesterone receptor component 1 OS=Mus musculus GN=Pgrmc1 PE=1 SV=4)

HSP 1 Score: 87.8113 bits (216), Expect = 2.683e-17
Identity = 47/109 (43.12%), Postives = 68/109 (62.39%), Query Frame = 2
Query:  161 EPLP-PPVQLGEITEEELKQYDGSDSKKPLLMAIKSQIYDVSQSRMFYGPGGPYALFAGKDASRALAKMSFEE---KDLTGDISGLGPFELEALQDWEYKFMSKYVKVG 475
            EP P P ++  + T  EL+++DG    + +LMAI  +++DV++ R FYGP GPY +FAG+DASR LA    ++   KD   D+S L P + E L DW+ +F  KY  VG
Sbjct:   61 EPPPLPRLKRRDFTPAELRRFDGVQDPR-ILMAINGKVFDVTKGRKFYGPEGPYGVFAGRDASRGLATFCLDKEALKDEYDDLSDLTPAQQETLSDWDSQFTFKYHHVG 168          
The following BLAST results are available for this feature:
BLAST of CX294350 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 26
Match NameE-valueIdentityDescription
MSBP2_ARATH8.515e-6688.98Membrane steroid-binding protein 2 OS=Arabidopsis ... [more]
MSBP1_ARATH1.309e-6080.83Membrane steroid-binding protein 1 OS=Arabidopsis ... [more]
SBP3_ARATH4.273e-2351.58Probable steroid-binding protein 3 OS=Arabidopsis ... [more]
NENF_RAT2.195e-1949.02Neudesin OS=Rattus norvegicus GN=Nenf PE=2 SV=1[more]
NENF_MOUSE2.426e-1847.06Neudesin OS=Mus musculus GN=Nenf PE=1 SV=1[more]
PGRC1_RAT1.204e-1744.04Membrane-associated progesterone receptor componen... [more]
PGRC1_PIG2.054e-1738.66Membrane-associated progesterone receptor componen... [more]
PGRC1_BOVIN2.054e-1738.66Membrane-associated progesterone receptor componen... [more]
NENF_BOVIN2.054e-1745.10Neudesin OS=Bos taurus GN=NENF PE=2 SV=1[more]
PGRC1_MOUSE2.683e-1743.12Membrane-associated progesterone receptor componen... [more]

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Properties
Property NameValue
Genbank descriptionC05015F01SK FlavSen1 Citrus clementina cDNA clone C05015F01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX294350 ID=CX294350; Name=CX294350; organism=Citrus clementina; type=EST; length=479bp
ACTCTAAAAGAGGCGATAACAGCGTACACGGGGCTCTCCCCGGCGGCGTT
TTTTACAGTTGTTGCGTTGCTGTGGGCCATATACTATGTTCTGTCGGGAA
TGTTTGGTGTCGTCCGATAATCATCATCAGCAGAGATCGAGGGAGTACGA
GGAACAGATGGAGCCTCTGCCACCGCCTGTTCAGCTAGGCGAGATTACCG
AGGAGGAGCTCAAACAGTACGATGGCTCCGATTCCAAAAAGCCCCTTCTC
ATGGCCATCAAGAGCCAGATCTACGATGTCTCTCAGAGCAGGATGTTTTA
TGGACCTGGTGGGCCATATGCGTTGTTTGCTGGAAAGGATGCTAGCAGGG
CCCTTGCCAAGATGTCTTTTGAGGAAAAAGATTTAACTGGTGATATCTCT
GGTCTTGGTCCATTTGAGTTGGAGGCATTGCAGGACTGGGAGTATAAGTT
CATGAGCAAGTATGTTAAGGTTGGATCTA
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