CX294358

Overview
NameCX294358
Unique NameCX294358
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length606
Libraries
Library NameType
FlavSen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX294358 vs. ExPASy Swiss-Prot
Match: WRK75_ARATH (Probable WRKY transcription factor 75 OS=Arabidopsis thaliana GN=WRKY75 PE=2 SV=1)

HSP 1 Score: 148.673 bits (374), Expect = 2.204e-35
Identity = 67/83 (80.72%), Postives = 76/83 (91.57%), Query Frame = 1
Query:  241 RYAFQTRSQVDILDDGYRWRKYGQKVVKNSKFPRSYYKCTHKGCNVKKQVQRNTKDEEIVVTTYEGLHTHPIGKITDSFEQIL 489
            RYAFQTRSQVDILDDGYRWRKYGQK VKN+KFPRSYY+CT+ GCNVKKQVQR T D+E+VVTTYEG+H+HPI K T++FE IL
Sbjct:   54 RYAFQTRSQVDILDDGYRWRKYGQKAVKNNKFPRSYYRCTYGGCNVKKQVQRLTVDQEVVVTTYEGVHSHPIEKSTENFEHIL 136          
BLAST of CX294358 vs. ExPASy Swiss-Prot
Match: WRK45_ARATH (Probable WRKY transcription factor 45 OS=Arabidopsis thaliana GN=WRKY45 PE=2 SV=1)

HSP 1 Score: 140.584 bits (353), Expect = 6.003e-33
Identity = 71/127 (55.91%), Postives = 86/127 (67.72%), Query Frame = 1
Query:  109 IDPRAQ*HAVSEFQLYSGGASGTSGSDKAKQSXXXXXXXXXXXXRYAFQTRSQVDILDDGYRWRKYGQKVVKNSKFPRSYYKCTHKGCNVKKQVQRNTKDEEIVVTTYEGLHTHPIGKITDSFEQIL 489
            +DPR     ++EF      A  T+ S++  +S            RYAFQTRSQVDILDDGYRWRKYGQK VKN+ FPRSYYKCT +GC VKKQVQR   DE +VVTTY+G+HTH + K +D+F  IL
Sbjct:   16 VDPR-----LTEFHGVDNSAQPTTSSEEKPRSKKKKKEREA---RYAFQTRSQVDILDDGYRWRKYGQKAVKNNPFPRSYYKCTEEGCRVKKQVQRQWGDEGVVVTTYQGVHTHAVDKPSDNFHHIL 134          
BLAST of CX294358 vs. ExPASy Swiss-Prot
Match: WRK56_ARATH (Probable WRKY transcription factor 56 OS=Arabidopsis thaliana GN=WRKY56 PE=2 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 3.769e-27
Identity = 59/128 (46.09%), Postives = 77/128 (60.16%), Query Frame = 1
Query:  130 HAVSEFQLYSGG--------ASGTSGSDKAKQSXXXXXXXXXXXXRYAFQTRSQVDILDDGYRWRKYGQKVVKNSKFPRSYYKCTHKGCNVKKQVQRNTKDEEIVVTTYEGLHTHPIGKITDSFEQIL 489
            H  ++ + + GG        ++ ++ SD  K              R AF TRS  D+LDDGYRWRKYGQK VKN+  PRSYY+CT+  CNVKKQVQR  KD  +VVTTYEG+H HP  K+ ++   +L
Sbjct:   56 HLSAQLENFRGGGGEMGGLVSNNSNNSDHNKNCNKGKGKRTLAMQRIAFHTRSDDDVLDDGYRWRKYGQKSVKNNAHPRSYYRCTYHTCNVKKQVQRLAKDPNVVVTTYEGVHNHPCEKLMETLSPLL 183          
BLAST of CX294358 vs. ExPASy Swiss-Prot
Match: WRK24_ARATH (Probable WRKY transcription factor 24 OS=Arabidopsis thaliana GN=WRKY24 PE=2 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 5.442e-26
Identity = 52/83 (62.65%), Postives = 63/83 (75.90%), Query Frame = 1
Query:  241 RYAFQTRSQVDILDDGYRWRKYGQKVVKNSKFPRSYYKCTHKGCNVKKQVQRNTKDEEIVVTTYEGLHTHPIGKITDSFEQIL 489
            R AF TRS  D+LDDGYRWRKYGQK VK++  PRSYY+CT+  CNVKKQVQR  KD  +VVTTYEG+H HP  K+ ++   +L
Sbjct:   85 RIAFHTRSDDDVLDDGYRWRKYGQKSVKHNAHPRSYYRCTYHTCNVKKQVQRLAKDPNVVVTTYEGVHNHPCEKLMETLNPLL 167          
BLAST of CX294358 vs. ExPASy Swiss-Prot
Match: WRK43_ARATH (Probable WRKY transcription factor 43 OS=Arabidopsis thaliana GN=WRKY43 PE=1 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 1.212e-25
Identity = 51/83 (61.45%), Postives = 64/83 (77.11%), Query Frame = 1
Query:  241 RYAFQTRSQVDILDDGYRWRKYGQKVVKNSKFPRSYYKCTHKGCNVKKQVQRNTKDEEIVVTTYEGLHTHPIGKITDSFEQIL 489
            R++F+T+S  DILDDGYRWRKYGQK VKNS +PRSYY+CT   CNVKKQVQR +K+  IV TTYEG+H HP  ++  +   +L
Sbjct:   17 RFSFRTKSDADILDDGYRWRKYGQKSVKNSLYPRSYYRCTQHMCNVKKQVQRLSKETSIVETTYEGIHNHPCEELMQTLTPLL 99          
BLAST of CX294358 vs. ExPASy Swiss-Prot
Match: WRK48_ARATH (Probable WRKY transcription factor 48 OS=Arabidopsis thaliana GN=WRKY48 PE=2 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 6.017e-25
Identity = 49/71 (69.01%), Postives = 59/71 (83.10%), Query Frame = 1
Query:  241 RYAFQTRSQVDILDDGYRWRKYGQKVVKNSKFPRSYYKCTHKGCNVKKQVQRNTKDEEIVVTTYEGLHTHP 453
            R+AF T+S +D LDDGYRWRKYGQK VKNS +PRSYY+CT  GC VKK+V+R++ D  IV+TTYEG HTHP
Sbjct:  208 RFAFLTKSDIDNLDDGYRWRKYGQKAVKNSPYPRSYYRCTTVGCGVKKRVERSSDDPSIVMTTYEGQHTHP 278          
BLAST of CX294358 vs. ExPASy Swiss-Prot
Match: WRK71_ARATH (Probable WRKY transcription factor 71 OS=Arabidopsis thaliana GN=WRKY71 PE=2 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 1.341e-24
Identity = 48/72 (66.67%), Postives = 60/72 (83.33%), Query Frame = 1
Query:  241 RYAFQTRSQVDILDDGYRWRKYGQKVVKNSKFPRSYYKCTHKGCNVKKQVQRNTKDEEIVVTTYEGLHTHPI 456
            R AF T+S++D L+DGYRWRKYGQK VKNS +PRSYY+CT + CNVKK+V+R+ +D  IV+TTYEG H HPI
Sbjct:  123 RVAFMTKSEIDHLEDGYRWRKYGQKAVKNSPYPRSYYRCTTQKCNVKKRVERSFQDPSIVITTYEGKHNHPI 194          
BLAST of CX294358 vs. ExPASy Swiss-Prot
Match: WRK12_ARATH (Probable WRKY transcription factor 12 OS=Arabidopsis thaliana GN=WRKY12 PE=2 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 2.986e-24
Identity = 47/70 (67.14%), Postives = 58/70 (82.86%), Query Frame = 1
Query:  241 RYAFQTRSQVDILDDGYRWRKYGQKVVKNSKFPRSYYKCTHKGCNVKKQVQRNTKDEEIVVTTYEGLHTH 450
            R+ FQT+S VD+LDDGY+WRKYGQKVVKNS  PRSYY+CTH  C VKK+V+R ++D  +V+TTYEG H H
Sbjct:  132 RFCFQTKSDVDVLDDGYKWRKYGQKVVKNSLHPRSYYRCTHNNCRVKKRVERLSEDCRMVITTYEGRHNH 201          
BLAST of CX294358 vs. ExPASy Swiss-Prot
Match: WRK28_ARATH (Probable WRKY transcription factor 28 OS=Arabidopsis thaliana GN=WRKY28 PE=2 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 3.900e-24
Identity = 47/72 (65.28%), Postives = 60/72 (83.33%), Query Frame = 1
Query:  241 RYAFQTRSQVDILDDGYRWRKYGQKVVKNSKFPRSYYKCTHKGCNVKKQVQRNTKDEEIVVTTYEGLHTHPI 456
            R +F T+S+VD L+DGYRWRKYGQK VKNS +PRSYY+CT + CNVKK+V+R+ +D  +V+TTYEG H HPI
Sbjct:  159 RVSFMTKSEVDHLEDGYRWRKYGQKAVKNSPYPRSYYRCTTQKCNVKKRVERSFQDPTVVITTYEGQHNHPI 230          
BLAST of CX294358 vs. ExPASy Swiss-Prot
Match: WRK23_ARATH (Probable WRKY transcription factor 23 OS=Arabidopsis thaliana GN=WRKY23 PE=2 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 5.094e-24
Identity = 49/70 (70.00%), Postives = 57/70 (81.43%), Query Frame = 1
Query:  241 RYAFQTRSQVDILDDGYRWRKYGQKVVKNSKFPRSYYKCTHKGCNVKKQVQRNTKDEEIVVTTYEGLHTH 450
            R AF T+S+VD L+DGYRWRKYGQK VKNS FPRSYY+CT   CNVKK+V+R+ +D   VVTTYEG HTH
Sbjct:  161 RVAFMTKSEVDHLEDGYRWRKYGQKAVKNSPFPRSYYRCTTASCNVKKRVERSFRDPSTVVTTYEGQHTH 230          
The following BLAST results are available for this feature:
BLAST of CX294358 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 65
Match NameE-valueIdentityDescription
WRK75_ARATH2.204e-3580.72Probable WRKY transcription factor 75 OS=Arabidops... [more]
WRK45_ARATH6.003e-3355.91Probable WRKY transcription factor 45 OS=Arabidops... [more]
WRK56_ARATH3.769e-2746.09Probable WRKY transcription factor 56 OS=Arabidops... [more]
WRK24_ARATH5.442e-2662.65Probable WRKY transcription factor 24 OS=Arabidops... [more]
WRK43_ARATH1.212e-2561.45Probable WRKY transcription factor 43 OS=Arabidops... [more]
WRK48_ARATH6.017e-2569.01Probable WRKY transcription factor 48 OS=Arabidops... [more]
WRK71_ARATH1.341e-2466.67Probable WRKY transcription factor 71 OS=Arabidops... [more]
WRK12_ARATH2.986e-2467.14Probable WRKY transcription factor 12 OS=Arabidops... [more]
WRK28_ARATH3.900e-2465.28Probable WRKY transcription factor 28 OS=Arabidops... [more]
WRK23_ARATH5.094e-2470.00Probable WRKY transcription factor 23 OS=Arabidops... [more]

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Properties
Property NameValue
Genbank descriptionC05015F09SK FlavSen1 Citrus clementina cDNA clone C05015F09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX294358 ID=CX294358; Name=CX294358; organism=Citrus clementina; type=EST; length=606bp
TTTTAATTATTGTGCTTCTGCTTGATGGTAGTGGTAGAGCAGTCCCATAT
GGACAACTCCCATTTACAGTCAAGATTTTCAGCTTCTCATTCCTCATTGA
ACATGGGAATTGATCCCCGTGCACAATAACATGCTGTATCTGAATTTCAA
CTTTACTCAGGTGGTGCTAGTGGAACCTCTGGGAGTGATAAGGCGAAACA
ATCTGGAAAGAAAGGAGACCACAAAGGGACCAAAAAGCACAGATATGCTT
TTCAAACGAGAAGCCAGGTTGACATACTTGATGACGGTTATAGATGGAGG
AAATATGGACAAAAGGTTGTAAAGAACAGCAAGTTCCCCAGGAGTTACTA
CAAATGTACTCACAAAGGGTGCAATGTGAAAAAGCAAGTCCAACGCAATA
CAAAAGATGAAGAGATTGTGGTGACAACCTATGAAGGACTGCATACACAT
CCAATTGGGAAGATCACCGACAGCTTTGAACAGATCCTGCTGAAAGCATG
TACCACTTCGTAATTTGAAAGCTGTCGCCATTGATCCTCATTTCAAGAGT
GTTATGTGCCAGTGTTTGATGTATATGCCATTTATTATTGCTGACTTTCA
TTATCA
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