CX294583

Overview
NameCX294583
Unique NameCX294583
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length531
Libraries
Library NameType
FlavRip1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig564 contig Ccv1_Contig564:1..473. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX294583 vs. ExPASy Swiss-Prot
Match: RS3A_HELAN (40S ribosomal protein S3a OS=Helianthus annuus GN=RPS3A PE=2 SV=2)

HSP 1 Score: 173.326 bits (438), Expect = 6.297e-43
Identity = 89/104 (85.58%), Postives = 96/104 (92.31%), Query Frame = 1
Query:    1 TSQIRQIRRKMREIMVAQAASCDLKSLVEKFIAEVIGREIEKATSSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDYSEDVGVKVDRPADEPMPEAPTEVIGA 312
            +SQI+QIRRKMREIMV QA +CDLK LV+KFI E IGREIEKATSSIYPLQNVFIRKVKILKAPKFD+GKLMEVHGDYSEDVGVK+DRPA+E  PEA TEVIGA
Sbjct:  158 SSQIKQIRRKMREIMVTQAQTCDLKELVQKFIPESIGREIEKATSSIYPLQNVFIRKVKILKAPKFDIGKLMEVHGDYSEDVGVKLDRPAEEAAPEA-TEVIGA 260          
BLAST of CX294583 vs. ExPASy Swiss-Prot
Match: RS3A1_VITVI (40S ribosomal protein S3a-1 OS=Vitis vinifera GN=GSVIVT00020038001 PE=3 SV=1)

HSP 1 Score: 172.555 bits (436), Expect = 1.074e-42
Identity = 87/104 (83.65%), Postives = 93/104 (89.42%), Query Frame = 1
Query:    1 TSQIRQIRRKMREIMVAQAASCDLKSLVEKFIAEVIGREIEKATSSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDYSEDVGVKVDRPADEPMPEAPTEVIGA 312
            +SQIRQIRRKMREIM   A SCDLK LV+KFI E IGREIEKATSSIYPLQNV+IRKVKILKAPKFDLGKLMEVHGDYSEDVG K++RPADEP+ E  TEVIGA
Sbjct:  158 SSQIRQIRRKMREIMTNMATSCDLKELVKKFIPESIGREIEKATSSIYPLQNVYIRKVKILKAPKFDLGKLMEVHGDYSEDVGTKLERPADEPVAEGVTEVIGA 261          
BLAST of CX294583 vs. ExPASy Swiss-Prot
Match: RS3A2_ARATH (40S ribosomal protein S3a-2 OS=Arabidopsis thaliana GN=RPS3AB PE=2 SV=3)

HSP 1 Score: 170.629 bits (431), Expect = 4.082e-42
Identity = 88/105 (83.81%), Postives = 93/105 (88.57%), Query Frame = 1
Query:    1 TSQIRQIRRKMREIMVAQAASCDLKSLVEKFIAEVIGREIEKATSSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDY-SEDVGVKVDRPADEPMPEAPTEVIGA 312
            +SQIRQIRRKM EIMV +A+SCDLK LV KFI E IGREIEKAT  IYPLQNVFIRKVKILKAPKFDLGKLMEVHGDY +EDVGVKVDRPADE M E PTE+IGA
Sbjct:  158 SSQIRQIRRKMSEIMVKEASSCDLKELVAKFIPEAIGREIEKATQGIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDYTAEDVGVKVDRPADETMVEEPTEIIGA 262          
BLAST of CX294583 vs. ExPASy Swiss-Prot
Match: RS3A1_ARATH (40S ribosomal protein S3a-1 OS=Arabidopsis thaliana GN=RPS3AA PE=1 SV=3)

HSP 1 Score: 169.088 bits (427), Expect = 1.188e-41
Identity = 87/105 (82.86%), Postives = 93/105 (88.57%), Query Frame = 1
Query:    1 TSQIRQIRRKMREIMVAQAASCDLKSLVEKFIAEVIGREIEKATSSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDYS-EDVGVKVDRPADEPMPEAPTEVIGA 312
            +SQIRQIRRKMR+IMV +A+SCDLK LV KFI E IGREIEKAT  IYPLQNVFIRKVKILKAPKFDLGKLM+VHGDYS EDVGVKVDRPADE   E PTE+IGA
Sbjct:  158 SSQIRQIRRKMRDIMVREASSCDLKDLVAKFIPEAIGREIEKATQGIYPLQNVFIRKVKILKAPKFDLGKLMDVHGDYSAEDVGVKVDRPADEMAVEEPTEIIGA 262          
BLAST of CX294583 vs. ExPASy Swiss-Prot
Match: RS3A_CICAR (40S ribosomal protein S3a OS=Cicer arietinum PE=2 SV=1)

HSP 1 Score: 168.318 bits (425), Expect = 2.026e-41
Identity = 84/104 (80.77%), Postives = 92/104 (88.46%), Query Frame = 1
Query:    1 TSQIRQIRRKMREIMVAQAASCDLKSLVEKFIAEVIGREIEKATSSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDYSEDVGVKVDRPADEPMPEAPTEVIGA 312
            +SQIRQIRRKMREIMV QA SCDLK LV KFI E+IG+EIEKATSSIYPLQNVFIRKVKILK+PKFDLGKLMEVHGDYSEDVG KV+ PADE + E   E++GA
Sbjct:  158 SSQIRQIRRKMREIMVNQATSCDLKELVRKFIPEMIGKEIEKATSSIYPLQNVFIRKVKILKSPKFDLGKLMEVHGDYSEDVGTKVESPADETVVEGTPEIVGA 261          
BLAST of CX294583 vs. ExPASy Swiss-Prot
Match: RS3A_CATRO (40S ribosomal protein S3a OS=Catharanthus roseus GN=RPS3A PE=2 SV=4)

HSP 1 Score: 166.777 bits (421), Expect = 5.894e-41
Identity = 88/105 (83.81%), Postives = 95/105 (90.48%), Query Frame = 1
Query:    1 TSQIRQIRRKMREIMVAQAASCDLKSLVEKFIAEVIGREIEKATSSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDYSE-DVGVKVDRPADEPMPEAPTEVIGA 312
            +SQIRQIRRKMREIMV QA SCDLK LV+KFI E IGREIEKATSSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDY+E D+G K+DRPA+E + E PTEVIGA
Sbjct:  158 SSQIRQIRRKMREIMVNQAQSCDLKDLVQKFIPESIGREIEKATSSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDYNEDDIGTKLDRPAEEAVAE-PTEVIGA 261          
BLAST of CX294583 vs. ExPASy Swiss-Prot
Match: RS3A_DAUCA (40S ribosomal protein S3a OS=Daucus carota GN=cyc07 PE=2 SV=1)

HSP 1 Score: 164.851 bits (416), Expect = 2.240e-40
Identity = 84/104 (80.77%), Postives = 92/104 (88.46%), Query Frame = 1
Query:    1 TSQIRQIRRKMREIMVAQAASCDLKSLVEKFIAEVIGREIEKATSSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDYSEDVGVKVDRPADEPMPEAPTEVIGA 312
            +SQIRQIRRKM EIM  QA+SCDLK LV KFI E IGREIEKATSSI+PLQNVFIRKVKILKAPKFD+GKLMEVHGDYSEDVGVK++RP +E M E  TEV+GA
Sbjct:  158 SSQIRQIRRKMVEIMRNQASSCDLKELVAKFIPESIGREIEKATSSIFPLQNVFIRKVKILKAPKFDIGKLMEVHGDYSEDVGVKLERPIEETMVEGETEVVGA 261          
BLAST of CX294583 vs. ExPASy Swiss-Prot
Match: RS3A_TOBAC (40S ribosomal protein S3a OS=Nicotiana tabacum GN=cyc07 PE=2 SV=1)

HSP 1 Score: 164.081 bits (414), Expect = 3.820e-40
Identity = 84/104 (80.77%), Postives = 92/104 (88.46%), Query Frame = 1
Query:    1 TSQIRQIRRKMREIMVAQAASCDLKSLVEKFIAEVIGREIEKATSSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDYSEDVGVKVDRPADEPMPEAPTEVIGA 312
            +SQIRQIRRKM EIM  QA+SCDLK LV KFI E IGREIEKATSSI+PLQNV+IRKVKILKAPKFD+GKLMEVHGDYSEDVGVK+DRPADE + EA  E+ GA
Sbjct:  158 SSQIRQIRRKMVEIMRNQASSCDLKELVAKFIPESIGREIEKATSSIFPLQNVYIRKVKILKAPKFDIGKLMEVHGDYSEDVGVKLDRPADETVAEAEPEIPGA 261          
BLAST of CX294583 vs. ExPASy Swiss-Prot
Match: RS3A_BRARA (40S ribosomal protein S3a OS=Brassica rapa GN=RPS3A PE=2 SV=2)

HSP 1 Score: 153.68 bits (387), Expect = 5.163e-37
Identity = 83/106 (78.30%), Postives = 92/106 (86.79%), Query Frame = 1
Query:    1 TSQIRQIRRKMREIMVAQ-AASCDLKSLVEKFIAEVIGREIEKATSSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDY-SEDVGVKVDRPADEPMPEAPTEVIGA 312
            +SQIRQIR KMREIM+ + A+SCDLK LV KFI E IG++IEKAT  IYPLQNVFIRKVKILKAPKFDL KLMEVHGDY +EDVGVKVDRPADE + E PTE+IGA
Sbjct:  158 SSQIRQIRSKMREIMIKEEASSCDLKELVAKFIPESIGKDIEKATQGIYPLQNVFIRKVKILKAPKFDLRKLMEVHGDYTAEDVGVKVDRPADE-VVEEPTEIIGA 262          
BLAST of CX294583 vs. ExPASy Swiss-Prot
Match: RS3A_ORYSJ (40S ribosomal protein S3a OS=Oryza sativa subsp. japonica GN=RPS3A PE=2 SV=2)

HSP 1 Score: 149.443 bits (376), Expect = 9.738e-36
Identity = 75/92 (81.52%), Postives = 84/92 (91.30%), Query Frame = 1
Query:    4 SQIRQIRRKMREIMVAQAASCDLKSLVEKFIAEVIGREIEKATSSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDYS-EDVGVKVDRPADE 276
            SQIRQIRRKM EIM  QA+SCDLK LV KFI EVIG+EIEKATSSI+PLQNVF+RKVKILKAPKFDLGKLMEVHGDY+ ED+G K+DRPA++
Sbjct:  159 SQIRQIRRKMVEIMANQASSCDLKELVSKFIPEVIGKEIEKATSSIFPLQNVFVRKVKILKAPKFDLGKLMEVHGDYAKEDIGTKLDRPAED 250          
The following BLAST results are available for this feature:
BLAST of CX294583 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 148
Match NameE-valueIdentityDescription
RS3A_HELAN6.297e-4385.5840S ribosomal protein S3a OS=Helianthus annuus GN=... [more]
RS3A1_VITVI1.074e-4283.6540S ribosomal protein S3a-1 OS=Vitis vinifera GN=G... [more]
RS3A2_ARATH4.082e-4283.8140S ribosomal protein S3a-2 OS=Arabidopsis thalian... [more]
RS3A1_ARATH1.188e-4182.8640S ribosomal protein S3a-1 OS=Arabidopsis thalian... [more]
RS3A_CICAR2.026e-4180.7740S ribosomal protein S3a OS=Cicer arietinum PE=2 ... [more]
RS3A_CATRO5.894e-4183.8140S ribosomal protein S3a OS=Catharanthus roseus G... [more]
RS3A_DAUCA2.240e-4080.7740S ribosomal protein S3a OS=Daucus carota GN=cyc0... [more]
RS3A_TOBAC3.820e-4080.7740S ribosomal protein S3a OS=Nicotiana tabacum GN=... [more]
RS3A_BRARA5.163e-3778.3040S ribosomal protein S3a OS=Brassica rapa GN=RPS3... [more]
RS3A_ORYSJ9.738e-3681.5240S ribosomal protein S3a OS=Oryza sativa subsp. j... [more]

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Properties
Property NameValue
Genbank descriptionC05054F08SK FlavRip1 Citrus clementina cDNA clone C05054F08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX294583 ID=CX294583; Name=CX294583; organism=Citrus clementina; type=EST; length=531bp
ACCAGCCAGATTAGACAGATTCGCCGCAAGATGAGGGAGATCATGGTTGC
TCAGGCAGCATCTTGTGATCTTAAGAGCTTGGTCGAAAAGTTCATTGCTG
AAGTGATTGGAAGAGAGATTGAGAAGGCAACGTCAAGCATATACCCCTTA
CAAAATGTGTTCATTCGCAAAGTGAAGATCCTGAAAGCTCCCAAGTTTGA
TCTTGGAAAATTGATGGAGGTTCACGGTGATTACTCGGAAGATGTTGGTG
TGAAGGTGGATAGGCCAGCTGATGAGCCCATGCCTGAAGCACCAACTGAA
GTGATTGGAGCTTGAACGTGAATGAAGAAATTTTTCTAGTTTTGTTTTTC
ACTACTATTCTGATCTGGGCAGTTTTGTTTGTTATGAATTCATCATATAT
GAATGTTTCAAGTTGTTTGCAGATTTTAAATATTCTAGCTGAGATGGTTA
CTGTTGTTTCTATGGTAAGAACATGTGCTTTCTTCTTGCTTTATTCTAGT
GGACTAGATTCATGACATTATCCAAAATTTC
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