CX294596

Overview
NameCX294596
Unique NameCX294596
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length678
Libraries
Library NameType
FlavRip1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of CX294596 vs. ExPASy Swiss-Prot
Match: Y1341_ORYSJ (B3 domain-containing protein Os01g0234100 OS=Oryza sativa subsp. japonica GN=Os01g0234100 PE=2 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 4.760e-24
Identity = 68/219 (31.05%), Postives = 99/219 (45.21%), Query Frame = 3 
Query:    3 SGGWKAFSDANQLYEGDVLVFHLVEPTRFKAYIVRANGFGNVNADAKPLNSVPMDDELEVAPKDHSEXXXXXXXXXXXXXXXXGFHRDNNQSNSLMLLETNNGHVEDQFNNDTEDLGPNKVLPHSESSNFKEMKSIDDFTILVDGLAIDCELSDQHRNKYYDLCCSQNSFLHDHLLKSINCKLAAEIITQTVNIAEAIRACNLFT-SRADYEIWDKTLR 656
            S GW+ F+  + +  GDV+VF LV  T+FK +I+R                     +  ++P D +                                  ++    D   N   +         SE S F ++ S  +F I+VDGL IDC+  D  R  YY+LCC+Q SFLH HLL+ ++  L   +I +T+NIAE IRAC   T S+ D+ IW KTL+
Sbjct:  207 SAGWRGFAINHDIKVGDVVVFELVSTTKFKVHIIR---------------------DKNISPTDRAPGLKSFYACKKRKISKEATDNATKPKEDPETTRVSSKVAHDDTQNLVHEAIDGIRFSDSEMS-FDDVMSYSNFNIVVDGLVIDCKFPDHQRRTYYELCCAQKSFLHRHLLRQLSLTLVVGVIMETINIAEGIRACGAGTSSQEDFLIWKKTLQ 403
The following BLAST results are available for this feature:
BLAST of CX294596 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
Y1341_ORYSJ4.760e-2431.05B3 domain-containing protein Os01g0234100 OS=Oryza... [more]
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Properties
Property NameValue
Genbank descriptionC05054H05SK FlavRip1 Citrus clementina cDNA clone C05054H05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX294596 ID=CX294596; Name=CX294596; organism=Citrus clementina; type=EST; length=678bp
TGAGTGGTGGATGGAAAGCATTTTCTGATGCAAACCAATTATATGAGGGC
GATGTTTTAGTTTTCCATTTGGTTGAACCTACAAGGTTTAAGGCGTACAT
AGTGAGAGCAAATGGCTTTGGGAATGTAAATGCTGATGCAAAACCACTAA
ATTCTGTTCCCATGGATGATGAGCTTGAAGTAGCCCCAAAAGATCACTCG
GAGAAGCGTGTGAAGAAAAACAAAAGGGCAAAACGTGTAAAGCCTCCTCC
AGGCTTTCACCGAGACAACAATCAAAGCAATAGTCTGATGCTATTAGAAA
CCAATAATGGACATGTGGAAGATCAGTTTAATAATGACACTGAGGATCTC
GGCCCTAACAAAGTTCTACCACATTCAGAATCCAGTAATTTTAAAGAAAT
GAAAAGCATTGATGATTTCACCATTCTTGTGGATGGTTTGGCTATTGACT
GTGAGCTCTCCGATCAACATAGGAATAAATACTATGACCTCTGCTGCTCT
CAGAATTCCTTTCTGCATGACCATCTACTCAAGAGCATTAACTGTAAATT
GGCTGCTGAAATAATCACCCAGACTGTCAACATTGCAGAGGCCATTAGAG
CTTGCAACCTTTTCACCTCTCGAGCTGATTATGAGATTTGGGACAAAACT
TTGAGGGATTTGAGCTGTTGGGAATGAA
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