CX294665

Overview
NameCX294665
Unique NameCX294665
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length556
Libraries
Library NameType
AbsAOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15027 contig Ccv1_Contig15027:1..553. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX294665 vs. ExPASy Swiss-Prot
Match: PPA1_SOLLC (Acid phosphatase 1 OS=Solanum lycopersicum GN=APS1 PE=2 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 1.689e-25
Identity = 47/100 (47.00%), Postives = 74/100 (74.00%), Query Frame = 3
Query:  252 LSCLSWRLGVETNNVIGWATVPEKCADYVGHYMLGQQYRLDSEVVANEAILHAQSLTLAGDGKDIWVFDIDETSLCNLPYYAKNGFGVKPYNPTMFNEWV 551
            L C +WR  VETNN+  W T+PE+CADYV  YM+G  Y+++ + V++EA  +A+S+ L  DG+D+W+FD+DET L NLPYY+ + +G++ ++   F++WV
Sbjct:   41 LKCTTWRFVVETNNLSPWKTIPEECADYVKEYMVGPGYKMEIDRVSDEAGEYAKSVDLGDDGRDVWIFDVDETLLSNLPYYSDHRYGLEVFDDVEFDKWV 140          
BLAST of CX294665 vs. ExPASy Swiss-Prot
Match: VSPA_SOYBN (Stem 28 kDa glycoprotein OS=Glycine max GN=VSPA PE=2 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 7.844e-23
Identity = 47/103 (45.63%), Postives = 70/103 (67.96%), Query Frame = 3
Query:  246 PGLSCLSWRLGVETNNVIGWATVPEKCADYVGHYMLGQQYRLDSEVVANEAILHAQSLTLAGDGKDIWVFDIDETSLCNLPYYAKNGFGVKPYNPTMFNEWVN 554
            P + C SWRL VE +N+ G+ T+PE+C +    Y+ G+QYR DS+ V  +A  +A+ L +    KD +VF ID T L N+PYY K+G+GV+ +N T+++EWVN
Sbjct:   38 PEVKCASWRLAVEAHNIFGFETIPEECVEATKEYIHGEQYRSDSKTVNQQAYFYARDLEV--HPKDTFVFSIDGTVLSNIPYYKKHGYGVEKFNSTLYDEWVN 138          
BLAST of CX294665 vs. ExPASy Swiss-Prot
Match: S25K_SOYBN (Stem 31 kDa glycoprotein (Fragment) OS=Glycine max GN=VSP25 PE=2 SV=2)

HSP 1 Score: 106.686 bits (265), Expect = 7.844e-23
Identity = 47/103 (45.63%), Postives = 70/103 (67.96%), Query Frame = 3
Query:  246 PGLSCLSWRLGVETNNVIGWATVPEKCADYVGHYMLGQQYRLDSEVVANEAILHAQSLTLAGDGKDIWVFDIDETSLCNLPYYAKNGFGVKPYNPTMFNEWVN 554
            P + C SWRL VE +N+ G+ T+PE+C +    Y+ G+QYR DS+ V  +A  +A+ L +    KD +VF ID T L N+PYY K+G+GV+ +N T+++EWVN
Sbjct:   35 PEVKCASWRLAVEAHNIFGFETIPEECVEATKEYIHGEQYRSDSKTVNQQAYFYARDLEV--HPKDTFVFSIDGTVLSNIPYYKKHGYGVEKFNSTLYDEWVN 135          
BLAST of CX294665 vs. ExPASy Swiss-Prot
Match: VSP2_ARATH (Vegetative storage protein 2 OS=Arabidopsis thaliana GN=VSP2 PE=1 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 4.304e-21
Identity = 44/100 (44.00%), Postives = 67/100 (67.00%), Query Frame = 3
Query:  255 SCLSWRLGVETNNVIGWATVPEKCADYVGHYML-GQQYRLDSEVVANEAILHAQSLTLAGDGKDIWVFDIDETSLCNLPYYAKNGFGVKPYNPTMFNEWV 551
            +C SW LGVET+N+I + TVP  C DYV  Y++  +QY+ DS+ V  EA  +A+ L L  D  ++W+FD+D+T L ++PYYAK G+G +  +P  +  W+
Sbjct:   51 NCRSWHLGVETSNIIDFDTVPANCKDYVEDYLITSKQYQYDSKTVCKEAYFYAKGLALKNDTVNVWIFDLDDTLLSSIPYYAKYGYGTEKTDPGAYWLWL 150          
BLAST of CX294665 vs. ExPASy Swiss-Prot
Match: VSP1_ARATH (Vegetative storage protein 1 OS=Arabidopsis thaliana GN=VSP1 PE=2 SV=2)

HSP 1 Score: 97.0561 bits (240), Expect = 6.216e-20
Identity = 43/100 (43.00%), Postives = 65/100 (65.00%), Query Frame = 3
Query:  255 SCLSWRLGVETNNVIGWATVPEKCADYVGHYML-GQQYRLDSEVVANEAILHAQSLTLAGDGKDIWVFDIDETSLCNLPYYAKNGFGVKPYNPTMFNEWV 551
            +C SW LGVET+N+I + TVP  C  YV  Y++  +QY+ DS+ V  EA  +A+ L L  D  ++W+FD+D+T L ++PYYAK G+G +   P  +  W+
Sbjct:   56 NCRSWHLGVETSNIINFDTVPANCKAYVEDYLITSKQYQYDSKTVNKEAYFYAKGLALKNDTVNVWIFDLDDTLLSSIPYYAKYGYGTENTAPGAYWSWL 155          
BLAST of CX294665 vs. ExPASy Swiss-Prot
Match: VSPB_SOYBN (Stem 31 kDa glycoprotein OS=Glycine max GN=VSPB PE=2 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 2.362e-19
Identity = 49/125 (39.20%), Postives = 78/125 (62.40%), Query Frame = 3
Query:  186 GIPHQIHLLRPKAG--SRNNDVPGLSCLSWRLGVETNNVIGWATVPEKCADYVGHYMLGQQYRLDSEVVANEAILHAQSLTLAGDGKDIWVFDIDETSLCNLPYYAKNGFGVKPYNPTMFNEWVN 554
            G  +Q   LR K G   R+++V    C S+RL VE +N+  + T+PE+C +    Y+ G+Q+R DS+ V  +A  +A    +  +  DI++F ID T L N+PYY K+G+GV+ +N T+++EWVN
Sbjct:   20 GAGYQRFPLRMKTGYGERSSEV---KCASFRLAVEAHNIRAFKTIPEECVEPTKDYINGEQFRSDSKTVNQQAFFYASEREVHHN--DIFIFGIDNTVLSNIPYYEKHGYGVEEFNETLYDEWVN 139          
The following BLAST results are available for this feature:
BLAST of CX294665 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 6
Match NameE-valueIdentityDescription
PPA1_SOLLC1.689e-2547.00Acid phosphatase 1 OS=Solanum lycopersicum GN=APS1... [more]
VSPA_SOYBN7.844e-2345.63Stem 28 kDa glycoprotein OS=Glycine max GN=VSPA PE... [more]
S25K_SOYBN7.844e-2345.63Stem 31 kDa glycoprotein (Fragment) OS=Glycine max... [more]
VSP2_ARATH4.304e-2144.00Vegetative storage protein 2 OS=Arabidopsis thalia... [more]
VSP1_ARATH6.216e-2043.00Vegetative storage protein 1 OS=Arabidopsis thalia... [more]
VSPB_SOYBN2.362e-1939.20Stem 31 kDa glycoprotein OS=Glycine max GN=VSPB PE... [more]
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Properties
Property NameValue
Genbank descriptionC05011F04SK AbsAOv1 Citrus clementina cDNA clone C05011F04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX294665 ID=CX294665; Name=CX294665; organism=Citrus clementina; type=EST; length=556bp
CNNNNNNNNNNNNNNNNNNNNGGAGGAAAAACAATATTACAGTTGTAATG
AGCATGGGAGGGGTGTCACTGCCATTATTTTTCTTTTTTCTGGCTACCAT
ATCAGCAACATCCCATGGATTTAGCATGGACATCCGCCATCTTTTTCTGG
CTACCATACCAGCAACATCCCATGGATTTAGCATGGGCATCCCCCATCAG
ATTCATCTTCTCCGACCGAAAGCCGGTTCCCGGAACAACGATGTGCCCGG
CTTGTCCTGCCTGAGTTGGCGACTCGGAGTGGAAACTAATAACGTTATAG
GATGGGCGACTGTTCCCGAAAAATGTGCAGACTACGTGGGGCATTACATG
TTAGGCCAGCAGTACCGCCTGGACTCTGAAGTGGTTGCTAATGAGGCCAT
TCTCCATGCTCAGAGCCTCACGCTTGCTGGCGACGGCAAGGACATTTGGG
TTTTCGACATAGATGAAACCTCGCTATGTAATTTGCCATATTATGCTAAG
AATGGATTCGGGGTGAAGCCGTACAACCCTACTATGTTTAATGAATGGGT
TAACAC
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