CX294739

Overview
NameCX294739
Unique NameCX294739
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length606
Libraries
Library NameType
FlavSen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX294739 vs. ExPASy Swiss-Prot
Match: SYP22_ARATH (Syntaxin-22 OS=Arabidopsis thaliana GN=SYP22 PE=1 SV=1)

HSP 1 Score: 140.969 bits (354), Expect = 4.597e-33
Identity = 90/191 (47.12%), Postives = 108/191 (56.54%), Query Frame = 1
Query:   40 MSFQDLQNGXXXXXXXXXXXXX---QAVAAGIFQINTAVAAFRRLVDAIGTSKDTLDHRQKLHNTRQRILQLVKDTSAKLKSVSESDRDADVNQNKKVEDAKLARDFQTVLQEFQKIQQLASEREXXXXXXXXXXXXXXXXXXXXXXGDHVGSENQPFLMEQKRQELFLLDXXXXXXXXXXXXXXHGLREI 603
            MSFQDL++G                QAVA+GIFQINT V+ F+RLV+ +GT KDT + R+KLH TR  I QLVKDTSAKLK  SE+D  + VN +KK+ DAKLARDFQ VL+EFQK QQ A+ERE                       D V  E +  L E KRQEL LLD               G++EI
Sbjct:    1 MSFQDLESGRGRSTRKFNGGRQDSTQAVASGIFQINTGVSTFQRLVNTLGTPKDTPELREKLHKTRLHIGQLVKDTSAKLKEASETDHQSGVNPSKKIADAKLARDFQAVLKEFQKAQQTAAERETTYTPFVPQSALPSSYTAGEV--DKV-PEQRAQLQESKRQELVLLDNEIAFNEAVIEEREQGIQEI 188          
BLAST of CX294739 vs. ExPASy Swiss-Prot
Match: SYP23_ARATH (Syntaxin-23 OS=Arabidopsis thaliana GN=SYP23 PE=2 SV=1)

HSP 1 Score: 136.732 bits (343), Expect = 8.669e-32
Identity = 89/199 (44.72%), Postives = 108/199 (54.27%), Query Frame = 1
Query:   40 MSFQDLQNGXXXXXXXXXXXXX--------QAVAAGIFQINTAVAAFRRLVDAIGTSKDTLDHRQKLHNTRQRILQLVKDTSAKLKSVSESDRDADVNQNKKVEDAKLARDFQTVLQEFQKIQQLASERE--XXXXXXXXXXXXXXXXXXXXXXGDHVGSENQPFLMEQKRQELFLLDXXXXXXXXXXXXXXHGLREIE 606
            MSFQDL+ G                     Q VA+GIFQINT+V+ F RLV+ +GT KDT + R+KLH TR  I QLVKDTSAKLK  SE+D    VNQ KK+ DAKLA+DFQ VL+EFQK Q+LA+ERE                        GD    E +  L+E KRQEL LLD               G++EI+
Sbjct:    1 MSFQDLEAGRGRSLASSRNINGGGSRQDTTQDVASGIFQINTSVSTFHRLVNTLGTPKDTPELREKLHKTRLYIGQLVKDTSAKLKEASETDHQRGVNQKKKIVDAKLAKDFQAVLKEFQKAQRLAAERETVYAPLVHKPSLPSSYTSSEIDVNGDK-HPEQRALLVESKRQELVLLDNEIAFNEAVIEEREQGIQEIQ 198          
BLAST of CX294739 vs. ExPASy Swiss-Prot
Match: SYP21_ARATH (Syntaxin-21 OS=Arabidopsis thaliana GN=SYP21 PE=1 SV=1)

HSP 1 Score: 130.183 bits (326), Expect = 8.114e-30
Identity = 83/200 (41.50%), Postives = 107/200 (53.50%), Query Frame = 1
Query:   40 MSFQDLQ-----------NGXXXXXXXXXXXXXQAVAAGIFQINTAVAAFRRLVDAIGTSKDTLDHRQKLHNTRQRILQLVKDTSAKLKSVSESDRDADVNQNKKVEDAKLARDFQTVLQEFQKIQQLASEREXXXXXXXXXXXXXXXXXXXXXXGDHVGSENQPFLMEQKRQELFLLDXXXXXXXXXXXXXXHGLREIE 606
            MSFQDL+            G             Q VAAGIF+I+TAV +F RLV++IGT KDTL+ R KL  TR +I +LVK+TSAKLK  SE+D     +Q KK+ DAKLA+DFQ+VL+EFQK Q+LA+ERE                           S+ Q  L++ +RQE+  LD               G+REIE
Sbjct:    1 MSFQDLEAGTRSPAPNRFTGGRQQRPSSRGDPSQEVAAGIFRISTAVNSFFRLVNSIGTPKDTLELRDKLQKTRLQISELVKNTSAKLKEASEADLHGSASQIKKIADAKLAKDFQSVLKEFQKAQRLAAEREITYTPVVTKEIPTSYNAPELDTESLRISQQQALLLQSRRQEVVFLDNEITFNEAIIEEREQGIREIE 200          
BLAST of CX294739 vs. ExPASy Swiss-Prot
Match: SYP24_ARATH (Putative syntaxin-24 OS=Arabidopsis thaliana GN=SYP24 PE=3 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 4.322e-15
Identity = 53/145 (36.55%), Postives = 73/145 (50.34%), Query Frame = 1
Query:  172 AIGTSKDTLDHRQKLHNTRQRILQLVKDTSAKLKSVSESDRDADVNQNKKVEDAKLARDFQTVLQEFQKIQQLASEREXXXXXXXXXXXXXXXXXXXXXXGDHVGSENQPFLMEQKRQELFLLDXXXXXXXXXXXXXXHGLREIE 606
            A+G+S  T  H++ L      I QLVKDTSA L+  SE+D   DV Q+KK+ DAKLA+DF+  L+EFQK Q +  ERE                        +  S+ Q  LME +RQE+ LLD               G++E++
Sbjct:  144 ALGSSNSTGGHKKML-----LIGQLVKDTSANLREASETDHRRDVAQSKKIADAKLAKDFEAALKEFQKAQHITVERETSYIPFDPKGSFSSSEVDI----GYDRSQEQRVLMESRRQEIVLLDNEISLNEARIEAREQGIQEVK 279          
The following BLAST results are available for this feature:
BLAST of CX294739 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 4
Match NameE-valueIdentityDescription
SYP22_ARATH4.597e-3347.12Syntaxin-22 OS=Arabidopsis thaliana GN=SYP22 PE=1 ... [more]
SYP23_ARATH8.669e-3244.72Syntaxin-23 OS=Arabidopsis thaliana GN=SYP23 PE=2 ... [more]
SYP21_ARATH8.114e-3041.50Syntaxin-21 OS=Arabidopsis thaliana GN=SYP21 PE=1 ... [more]
SYP24_ARATH4.322e-1536.55Putative syntaxin-24 OS=Arabidopsis thaliana GN=SY... [more]
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Properties
Property NameValue
Genbank descriptionC05055D03SK FlavSen1 Citrus clementina cDNA clone C05055D03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX294739 ID=CX294739; Name=CX294739; organism=Citrus clementina; type=EST; length=606bp
CCAAAAAAGCAAAACAGAAAACAGAGGAAAAAAAAAAAAATGAGCTTTCA
AGATCTACAGAATGGCTCGCGATCATCACCATCATCATCGTCCAAGAGCC
CATCACAAGCTGTGGCAGCCGGGATTTTCCAGATCAACACTGCCGTTGCC
GCTTTTCGTCGACTTGTTGACGCCATCGGAACTTCCAAGGACACTCTTGA
TCACCGCCAGAAGCTGCACAACACAAGGCAAAGAATTTTGCAGTTAGTGA
AAGATACTTCTGCTAAGCTCAAATCTGTCAGCGAGTCCGATCGCGACGCT
GATGTTAATCAAAATAAGAAGGTTGAAGATGCTAAGCTTGCCAGAGATTT
TCAAACAGTGTTGCAAGAATTTCAGAAAATCCAACAACTTGCCTCTGAAC
GGGAGTCTACTTACTCCCCTTCTGTTCCTCCGTCTTCAGCTCCACCAGCA
ACAACAGACACCTCTGGCTCGGGTGACCATGTGGGGTCTGAGAACCAGCC
GTTTCTTATGGAGCAGAAGAGGCAGGAGTTATTTCTGCTGGATAATGAAA
TTGCCTTCAATGAGGCCATTATTGAAGAGAGGGAGCATGGTCTTAGAGAA
ATTGAA
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