CX294876

Overview
NameCX294876
Unique NameCX294876
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length596
Libraries
Library NameType
PhIFruit1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig4088 contig Ccv1_Contig4088:912..1507. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX294876 vs. ExPASy Swiss-Prot
Match: POF21_ARATH (Probable transcription factor PosF21 OS=Arabidopsis thaliana GN=POSF21 PE=2 SV=1)

HSP 1 Score: 170.629 bits (431), Expect = 5.179e-42
Identity = 99/172 (57.56%), Postives = 108/172 (62.79%), Query Frame = 2
Query:   83 NRFSHDLSRMHDNPPKNVGHRRAHSEILTLPDDISFDSDLGVVG-GADGPSLSDETEEDLLSMYLDMDKFNASTATSGFQVXXXXXXXXXXXXXXXXXXXXXXXVENVGVGSTERPRIRHQHSQSMDGSTSIKPEMLMSASDEXXXXXXXXXXXXXXXXXXXXIDPKRAKRI 595
            NR SHD+SRM DNPPK +GHRRAHSEILTLPDD+SFDSDLGVVG  ADG S SDETEEDLLSMYLDMDKFN S+ATS  QV                        +N      ERPRIRHQHSQSMDGS +I  EMLMS +++                    IDPKRAKRI
Sbjct:   39 NRMSHDISRMLDNPPKKIGHRRAHSEILTLPDDLSFDSDLGVVGNAADGASFSDETEEDLLSMYLDMDKFN-SSATSSAQVGEPSGTAWKNETMMQTGTGSTSNPQNTVNSLGERPRIRHQHSQSMDGSMNIN-EMLMSGNEDDSAIDAKKSMSATKLAELALIDPKRAKRI 208          
BLAST of CX294876 vs. ExPASy Swiss-Prot
Match: RF2A_ORYSJ (Transcription factor RF2a OS=Oryza sativa subsp. japonica GN=RF2a PE=1 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 1.326e-21
Identity = 66/170 (38.82%), Postives = 84/170 (49.41%), Query Frame = 2
Query:   95 HDLSRMHDNPPKNVGHRRAHSEILTLPDDISFDSDLGVVGGADGPSLSDETEEDLLSMYLDMDKFNASTATSGFQVXXXXXXXXXXXXXXXXXXXXXXXVENVGVGSTERPRIRHQHSQSMDGSTSIKPEMLMSAS---DEXXXXXXXXXXXXXXXXXXXXIDPKRAKRI 595
            +D+SRM D P +N GHRRAHSEIL+LP+D+    DL   GG DGPSLSDE +E+L SM+LD++K N++   S                           V      +    R +HQHS SMD S SIK E L+ AS   +                     +DPKRAKRI
Sbjct:   35 YDISRMPDFPTRNPGHRRAHSEILSLPEDL----DLCAAGGGDGPSLSDENDEELFSMFLDVEKLNSTCGASS------------EAEAESSSAGAAAAVAAAAAAAAHGARPKHQHSLSMDESMSIKAEELVGASPGTEGMSSAEAKKAVSAAKLAELALVDPKRAKRI 188          
The following BLAST results are available for this feature:
BLAST of CX294876 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
POF21_ARATH5.179e-4257.56Probable transcription factor PosF21 OS=Arabidopsi... [more]
RF2A_ORYSJ1.326e-2138.82Transcription factor RF2a OS=Oryza sativa subsp. j... [more]
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Properties
Property NameValue
Genbank descriptionC05057A02SK PhIFruit1 Citrus clementina cDNA clone C05057A02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX294876 ID=CX294876; Name=CX294876; organism=Citrus clementina; type=EST; length=596bp
GCCATCGTCTTCGTCATTTCCTCCGCTAGCTCCAGGTGGTTCTAGCTCAG
ACGGATCTCATTTTGGTCATCAATCTGATTCGAACCGCTTTAGCCATGAT
CTTAGCCGAATGCATGATAACCCACCGAAGAATGTGGGCCATCGTCGAGC
CCATTCTGAAATCCTTACTCTCCCTGATGACATCAGCTTTGATAGTGATC
TTGGTGTGGTTGGTGGTGCTGATGGGCCATCTTTATCAGATGAGACGGAG
GAGGACTTACTGTCTATGTATCTTGATATGGATAAGTTCAATGCTTCTAC
AGCAACATCGGGTTTTCAAGTGGGTGAGCCATCAGCGGCTGCAGCTCCAG
CACCCACATCGGCGGCGGCTGCTGGCAGTGGAATTTCTTCTGTAGAGAAT
GTGGGTGTTGGATCTACTGAGAGGCCTAGGATTAGACATCAGCACAGCCA
GTCAATGGATGGTTCGACGAGTATTAAGCCAGAAATGCTCATGTCAGCTT
CAGATGAGGCGCCTTCTGCTGATTCGAAGAAAGCTATGTCTGCTGCTAAG
CTTGCTGAACTAGCACTCATTGATCCAAAGCGTGCAAAGAGAATCT
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