CX294923

Overview
NameCX294923
Unique NameCX294923
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length498
Libraries
Library NameType
PhIFruit1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX294923 vs. ExPASy Swiss-Prot
Match: QKIL2_ARATH (KH domain-containing protein At5g56140 OS=Arabidopsis thaliana GN=At5g56140 PE=2 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 2.929e-17
Identity = 41/58 (70.69%), Postives = 46/58 (79.31%), Query Frame = 3
Query:  324 GPRGNSFKRVKPCPKCRVLFRGPGILKVPPGEEMLRGKPGYEHLNEPLHIRVEAKLPV 497
            GPRGNS KRV+    CRVL RG G +K P  EEM+RGKPGYEHLNEPLHI VEA+LP+
Sbjct:  188 GPRGNSLKRVEASTDCRVLIRGRGSIKDPIKEEMMRGKPGYEHLNEPLHILVEAELPI 245          
BLAST of CX294923 vs. ExPASy Swiss-Prot
Match: QKIL1_ARATH (KH domain-containing protein At4g26475 OS=Arabidopsis thaliana GN=At4g26475 PE=2 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 6.524e-17
Identity = 40/58 (68.97%), Postives = 46/58 (79.31%), Query Frame = 3
Query:  324 GPRGNSFKRVKPCPKCRVLFRGPGILKVPPGEEMLRGKPGYEHLNEPLHIRVEAKLPV 497
            GPRGNS KRV+    CRVL RG G +K P  E+M+RGKPGYEHLNEPLHI VEA+LP+
Sbjct:  182 GPRGNSLKRVEASTDCRVLIRGRGSIKDPIKEDMMRGKPGYEHLNEPLHILVEAELPI 239          
BLAST of CX294923 vs. ExPASy Swiss-Prot
Match: QKIL4_ARATH (KH domain-containing protein At3g08620 OS=Arabidopsis thaliana GN=At3g08620 PE=2 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 7.975e-15
Identity = 37/58 (63.79%), Postives = 42/58 (72.41%), Query Frame = 3
Query:  324 GPRGNSFKRVKPCPKCRVLFRGPGILKVPPGEEMLRGKPGYEHLNEPLHIRVEAKLPV 497
            GPRGNS KRV+    CRV  RG G +K P  EE L+GKPGYEHLNE LHI +EA LP+
Sbjct:  157 GPRGNSLKRVEATTGCRVYIRGKGSIKDPEKEEKLKGKPGYEHLNEQLHILIEADLPI 214          
BLAST of CX294923 vs. ExPASy Swiss-Prot
Match: QKIL3_ARATH (KH domain-containing protein At2g38610 OS=Arabidopsis thaliana GN=At2g38610 PE=1 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 3.031e-14
Identity = 36/57 (63.16%), Postives = 41/57 (71.93%), Query Frame = 3
Query:  324 GPRGNSFKRVKPCPKCRVLFRGPGILKVPPGEEMLRGKPGYEHLNEPLHIRVEAKLP 494
            GPRGNS KRV+    CRV  RG G +K P  E+ LRG+PGYEHLNE LHI +EA LP
Sbjct:  158 GPRGNSLKRVEATTGCRVFIRGKGSIKDPEKEDKLRGRPGYEHLNEQLHILIEADLP 214          
BLAST of CX294923 vs. ExPASy Swiss-Prot
Match: QKIL5_ARATH (KH domain-containing protein At1g09660 OS=Arabidopsis thaliana GN=At1g09660 PE=2 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 2.566e-13
Identity = 35/57 (61.40%), Postives = 41/57 (71.93%), Query Frame = 3
Query:  324 GPRGNSFKRVKPCPKCRVLFRGPGILKVPPGEEMLRGKPGYEHLNEPLHIRVEAKLP 494
            GPRGNS KRV+    CRV  RG G +K    EE L+GKPGYEHL EPLH+ +EA+LP
Sbjct:  169 GPRGNSLKRVELATHCRVFIRGRGSVKDTVKEEKLKGKPGYEHLCEPLHVLIEAELP 225          
The following BLAST results are available for this feature:
BLAST of CX294923 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
QKIL2_ARATH2.929e-1770.69KH domain-containing protein At5g56140 OS=Arabidop... [more]
QKIL1_ARATH6.524e-1768.97KH domain-containing protein At4g26475 OS=Arabidop... [more]
QKIL4_ARATH7.975e-1563.79KH domain-containing protein At3g08620 OS=Arabidop... [more]
QKIL3_ARATH3.031e-1463.16KH domain-containing protein At2g38610 OS=Arabidop... [more]
QKIL5_ARATH2.566e-1361.40KH domain-containing protein At1g09660 OS=Arabidop... [more]
back to top
Properties
Property NameValue
Genbank descriptionC05057E11SK PhIFruit1 Citrus clementina cDNA clone C05057E11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX294923 ID=CX294923; Name=CX294923; organism=Citrus clementina; type=EST; length=498bp
GAGAAGCACTGGGTTGAAATAATTAAGAACAGTGAAGGAAAGTTTTATTT
GAAGTAGATGGAATGCTTTAACTTCATAATCTAGCAACTAACTATATTAG
TATGTTAAATAGTGTTTTTTGAGGCTGCTATGTTCAATGTTATGATCGGA
AGTTCAGAACAACACCGTCCTTGGCTTATTAATTTTCTGTTTGTGTAAAT
ATATTCATATTATGTCTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAGGGGGGGGGGGGGTCCTCGAGGCAACTCGTTTAAGCGA
GTCAAACCTTGTCCAAAATGCCGGGTTTTGTTTAGGGGACCCGGCATTTT
AAAGGTTCCCCCAGGGGAAGAAATGTTGAGGGGAAAACCTGGGTATGAAC
ATTTGAATGAGCCTCTCCATATCCGGGTTGAGGCAAAATTGCCAGTTG
back to top