CX294947

Overview
NameCX294947
Unique NameCX294947
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length591
Libraries
Library NameType
PhIFruit1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CX294947 vs. ExPASy Swiss-Prot
Match: LEUNG_ARATH (Transcriptional corepressor LEUNIG OS=Arabidopsis thaliana GN=LUG PE=1 SV=2)

HSP 1 Score: 102.834 bits (255), Expect = 3.182e-37
Identity = 44/83 (53.01%), Postives = 65/83 (78.31%), Query Frame = 3 
Query:  351 QGGTAQVRFQPRIGQLLAAASDKVVSIFDIETDRQTHSLQGHAELVNYICWDTNGDYLASVSQNLVKVWSM---ASGECIQEL 590
            +GG+ Q+RFQPR+G+ LAA+S  +V++ D+ET    HSLQGHA  +N +CWD +GD+LASVS+++VKVW++   + GEC+ EL
Sbjct:  776 KGGSTQIRFQPRVGKYLAASSANLVNVLDVETQAIRHSLQGHANPINSVCWDPSGDFLASVSEDMVKVWTLGTGSEGECVHEL 858

HSP 2 Score: 73.1738 bits (178), Expect = 3.182e-37
Identity = 32/54 (59.26%), Postives = 38/54 (70.37%), Query Frame = 2 
Query:   98 FCLQAYTGHSSPIMSLDFHPKKTDLFCFCDNDNEIQYWSINPFLCTHITKVGYT 259
            + L+ + GHSS + SLDFHP K DL C CDNDNEI+YWSIN   CT + K G T
Sbjct:  727 YSLRTFMGHSSMVTSLDFHPIKDDLICSCDNDNEIRYWSINNGSCTRVYKGGST 780
The following BLAST results are available for this feature:
BLAST of CX294947 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
LEUNG_ARATH3.182e-3753.01Transcriptional corepressor LEUNIG OS=Arabidopsis ... [more]
back to top
Properties
Property NameValue
Genbank descriptionC05057H10SK PhIFruit1 Citrus clementina cDNA clone C05057H10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX294947 ID=CX294947; Name=CX294947; organism=Citrus clementina; type=EST; length=591bp
CTCGTGCCGAATTCGGCACGAGGATTACTTCATGCTGTATTTGTTCTTTC
TGTACTGCTATGTGGTGAAGTCATAAAGTGTGTTTTGGCAGCCGAACTTT
TGTTTGCAAGCATATACGGGGCACAGTTCGCCAATTATGTCCCTTGACTT
CCACCCTAAGAAAACCGATCTTTTTTGTTTTTGTGACAATGACAATGAAA
TTCAATACTGGAGTATCAATCCATTCTTGTGCACTCATATCACCAAGGTT
GGCTACACTATTTTTTTTTTTTTTTTCCTTCCCTAACTGTCTAAGCTAAG
CTGGATGGATTTTCTTTAAATAAAAACTATCAACCCCGCATTGATCGATC
CAGGGAGGCACTGCTCAAGTGAGGTTTCAACCAAGAATTGGACAATTGTT
GGCAGCGGCATCAGATAAAGTAGTTTCCATCTTTGATATTGAAACTGACA
GGCAAACACACTCATTGCAGGGACACGCTGAATTGGTAAACTACATATGC
TGGGATACAAATGGAGATTATTTGGCATCTGTCAGTCAAAACTTGGTAAA
AGTTTGGTCAATGGCCTCAGGGGAGTGCATTCAAGAGCTCA
back to top