CX295033

Overview
NameCX295033
Unique NameCX295033
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length687
Libraries
Library NameType
DroRLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CX295033_ssr16 microsatellite CX295033_ssr16:16..25. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig6419 contig Ccv1_Contig6419:249..936. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX295033 vs. ExPASy Swiss-Prot
Match: APXS_ARATH (L-ascorbate peroxidase S, chloroplastic/mitochondrial OS=Arabidopsis thaliana GN=APXS PE=1 SV=2)

HSP 1 Score: 340.887 bits (873), Expect = 3.793e-93
Identity = 166/214 (77.57%), Postives = 188/214 (87.85%), Query Frame = 3
Query:   48 LRFSPLISQRR---SSVNRGY-STVPTTKCAASDPDQLKSAREDIRELLKSTFCHPILVRLGWHDAGTYDKNIEEWPRRGGANASLRFEVELKHAANAGLVNALKLIQPIKDKYSGVTYADLFQLASATAIEEAGGPKIPMKYGRVDVSGPEQCPEEGRLPAAGPPSPAEHLRNVFYRMGLNDKEIVALSGAHTVGRSRPERSGWGKPETSTRK 677
            L  S  +SQ++   +SVNR + ST   TK ++SDPDQLK+AREDI+ELL + FCHPILVRLGWHDAGTY+KNI+EWP+RGGAN SLRF++ELKHAANAGLVNAL LI+ IK+KYSG++YADLFQLASATAIEEAGGPKIPMKYGRVD SGPE CPEEGRLP AGPPSPA HLR VFYRMGL+DK+IVALSGAHT+GRSRPERSGWGKPET   K
Sbjct:   70 LSSSSSLSQKKYRIASVNRSFNSTTAATKSSSSDPDQLKNAREDIKELLSTKFCHPILVRLGWHDAGTYNKNIKEWPQRGGANGSLRFDIELKHAANAGLVNALNLIKDIKEKYSGISYADLFQLASATAIEEAGGPKIPMKYGRVDASGPEDCPEEGRLPDAGPPSPATHLREVFYRMGLDDKDIVALSGAHTLGRSRPERSGWGKPETKYTK 283          
BLAST of CX295033 vs. ExPASy Swiss-Prot
Match: APXT_ARATH (L-ascorbate peroxidase T, chloroplastic OS=Arabidopsis thaliana GN=APXT PE=2 SV=2)

HSP 1 Score: 329.331 bits (843), Expect = 1.142e-89
Identity = 157/207 (75.85%), Postives = 179/207 (86.47%), Query Frame = 3
Query:   57 SPLISQRRSSVNRGYSTVPTTKCAASDPDQLKSAREDIRELLKSTFCHPILVRLGWHDAGTYDKNIEEWPRRGGANASLRFEVELKHAANAGLVNALKLIQPIKDKYSGVTYADLFQLASATAIEEAGGPKIPMKYGRVDVSGPEQCPEEGRLPAAGPPSPAEHLRNVFYRMGLNDKEIVALSGAHTVGRSRPERSGWGKPETSTRK 677
            S  + Q++  +N   + + + KCAASD  QL SA+EDI+ LL++ FCHPILVRLGWHDAGTY+KNIEEWP RGGAN SLRFE ELKHAANAGL+NALKLIQP+KDKY  ++YADLFQLASATAIEEAGGP IPMKYGRVDV  PEQCPEEGRLP AGPPSPA+HLR+VFYRMGL+DKEIVALSGAHT+GR+RP+RSGWGKPET   K
Sbjct:   56 SSFVLQKKHPINGTSTRMISPKCAASDAAQLISAKEDIKVLLRTKFCHPILVRLGWHDAGTYNKNIEEWPLRGGANGSLRFEAELKHAANAGLLNALKLIQPLKDKYPNISYADLFQLASATAIEEAGGPDIPMKYGRVDVVAPEQCPEEGRLPDAGPPSPADHLRDVFYRMGLDDKEIVALSGAHTLGRARPDRSGWGKPETKYTK 262          
BLAST of CX295033 vs. ExPASy Swiss-Prot
Match: APX6_ORYSJ (Probable L-ascorbate peroxidase 6, chloroplastic OS=Oryza sativa subsp. japonica GN=APX6 PE=2 SV=1)

HSP 1 Score: 325.865 bits (834), Expect = 1.263e-88
Identity = 158/192 (82.29%), Postives = 172/192 (89.58%), Query Frame = 3
Query:  111 PTTKCAASDPD---QLKSAREDIRELLKSTFCHPILVRLGWHDAGTYDKNIEEWPRRGGANASLRFEVELKHAANAGLVNALKLIQPIKDKYSGVTYADLFQLASATAIEEAGGPKIPMKYGRVDVSGPEQCPEEGRLPAAGPPSPAEHLRNVFYRMGLNDKEIVALSGAHTVGRSRPERSGWGKPETSTRK 677
            P +  AA+  D   +L+ ARED+++LLKST CHPILVRLGWHDAGTYDKNI EWP+ GGAN SLRFE+ELKHAANAGLVNALKLIQPIKDK++GVTYADLFQLASATAIEEAGGPKIPM YGRVDV+ PEQCP EGRLPAAGPPSPAEHLR VFYRMGL+DKEIVALSGAHT+GRSRPERSGWGKPET   K
Sbjct:   28 PASSSAAAAGDAAAELRGAREDVKQLLKSTSCHPILVRLGWHDAGTYDKNITEWPKCGGANGSLRFEIELKHAANAGLVNALKLIQPIKDKHAGVTYADLFQLASATAIEEAGGPKIPMIYGRVDVAAPEQCPPEGRLPAAGPPSPAEHLREVFYRMGLSDKEIVALSGAHTLGRSRPERSGWGKPETKYTK 219          
BLAST of CX295033 vs. ExPASy Swiss-Prot
Match: APX8_ORYSJ (Probable L-ascorbate peroxidase 8, chloroplastic OS=Oryza sativa subsp. japonica GN=APX8 PE=2 SV=2)

HSP 1 Score: 322.013 bits (824), Expect = 1.699e-87
Identity = 152/184 (82.61%), Postives = 167/184 (90.76%), Query Frame = 3
Query:  126 AASDPDQLKSAREDIRELLKSTFCHPILVRLGWHDAGTYDKNIEEWPRRGGANASLRFEVELKHAANAGLVNALKLIQPIKDKYSGVTYADLFQLASATAIEEAGGPKIPMKYGRVDVSGPEQCPEEGRLPAAGPPSPAEHLRNVFYRMGLNDKEIVALSGAHTVGRSRPERSGWGKPETSTRK 677
            AASD  QLKSAREDIRE+LK+T+CHPI+VRLGWHD+GTYDKNIEEWP+RGGA+ SLRF+ EL H ANAGL+NALKLIQPIKDKY G+TYADLFQLASATAIEEAGGPKIPMKYGRVDV+  EQCP EGRLP AGP  PA+HLR VFYRMGL+DKEIVALSGAHT+GRSRP+RSGWGKPET   K
Sbjct:   84 AASDAAQLKSAREDIREILKTTYCHPIMVRLGWHDSGTYDKNIEEWPQRGGADGSLRFDAELSHGANAGLINALKLIQPIKDKYPGITYADLFQLASATAIEEAGGPKIPMKYGRVDVTAAEQCPPEGRLPDAGPRVPADHLREVFYRMGLDDKEIVALSGAHTLGRSRPDRSGWGKPETKYTK 267          

HSP 2 Score: 22.7126 bits (47), Expect = 1.699e-87
Identity = 8/12 (66.67%), Postives = 9/12 (75.00%), Query Frame = 2
Query:  650 GQARNKYTKDGP 685
            G+   KYTKDGP
Sbjct:  259 GKPETKYTKDGP 270          
BLAST of CX295033 vs. ExPASy Swiss-Prot
Match: APX7_ORYSJ (Probable L-ascorbate peroxidase 7, chloroplastic OS=Oryza sativa subsp. japonica GN=APX7 PE=2 SV=1)

HSP 1 Score: 318.546 bits (815), Expect = 2.016e-86
Identity = 150/192 (78.12%), Postives = 168/192 (87.50%), Query Frame = 3
Query:  102 STVPTTKCAASDPDQLKSAREDIRELLKSTFCHPILVRLGWHDAGTYDKNIEEWPRRGGANASLRFEVELKHAANAGLVNALKLIQPIKDKYSGVTYADLFQLASATAIEEAGGPKIPMKYGRVDVSGPEQCPEEGRLPAAGPPSPAEHLRNVFYRMGLNDKEIVALSGAHTVGRSRPERSGWGKPETSTRK 677
            S    +   AS   +LK+AREDIRELLK+T CHPILVRLGWHD+GTYDKNI+EWP+RGGAN SLRF+VELKH ANAGLVNALKL+QPIKDKY  ++YADLFQLASATAIEEAGGPKIPM YGR+DV+GPEQCP EG+LP AGP +PA+HLR VFYRMGL+DKEIV LSGAHT+GRSRPERSGWGKPET   K
Sbjct:   77 SASAASAAVASGAAELKAAREDIRELLKTTHCHPILVRLGWHDSGTYDKNIKEWPQRGGANGSLRFDVELKHGANAGLVNALKLVQPIKDKYPNISYADLFQLASATAIEEAGGPKIPMTYGRIDVTGPEQCPPEGKLPDAGPSAPADHLRKVFYRMGLDDKEIVVLSGAHTLGRSRPERSGWGKPETKYTK 268          
BLAST of CX295033 vs. ExPASy Swiss-Prot
Match: APX5_ORYSJ (Probable L-ascorbate peroxidase 5, chloroplastic OS=Oryza sativa subsp. japonica GN=APX5 PE=2 SV=1)

HSP 1 Score: 295.819 bits (756), Expect = 1.399e-79
Identity = 145/192 (75.52%), Postives = 163/192 (84.90%), Query Frame = 3
Query:   93 RGYSTVPTTKCAASDPD-QLKSAREDIRELLKSTFCHPILVRLGWHDAGTYDKNIEEWPRRGGANASLRFEVELKHAANAGLVNALKLIQPIKDKYSGVTYADLFQLASATAIEEAGGPKIPMKYGRVDVSGPEQCPEEGRLPAAGPPSPAEHLRNVFYRMGLNDKEIVALSGAHTVGRSRPERSGWGKPET 665
            R  S+  +   AA D + +L++ARED+R+LLKS  CHPILVRLGWHDAGTYDKNI EWP+ GGAN SLRF VEL HAAN GL+ AL L+ PIK KY+GVTYAD+FQLASATAIEEAGGPKIPM YGR DV+  E+CP EGRLPAA PPSPAEHLR VFYRMGL+DKEIVALSGAHT+GR+RPERSGWGKPET
Sbjct:   35 RPASSSSSAAAAAGDVEAELRAAREDVRQLLKSNPCHPILVRLGWHDAGTYDKNITEWPKCGGANGSLRFGVELVHAANKGLLKALFLVIPIKSKYAGVTYADIFQLASATAIEEAGGPKIPMIYGRADVADGEECPPEGRLPAADPPSPAEHLREVFYRMGLSDKEIVALSGAHTLGRARPERSGWGKPET 226          
BLAST of CX295033 vs. ExPASy Swiss-Prot
Match: APX3_ORYSJ (Probable L-ascorbate peroxidase 3 OS=Oryza sativa subsp. japonica GN=APX3 PE=2 SV=1)

HSP 1 Score: 175.637 bits (444), Expect = 2.110e-43
Identity = 92/169 (54.44%), Postives = 116/169 (68.64%), Query Frame = 3
Query:  144 QLKSAREDIRELLKSTFCHPILVRLGWHDAGTYDKNIEEWPRRGGANASLRFEVELKHAANAGLVNALKLIQPIKDKYSGVTYADLFQLASATAIEEAGGPKIPMKYGRVDVSGPEQCPEEGRLPAAGPPSPAEHLRNVFYRMGLNDKEIVALSGAHTVGRSRPERSGW 650
            +++ AR D+R L+ S  C PI++RL WHDAGTYDK      + GG N S+RF  E  HAANAG+  A+ L++P+K K+  +TYADL+QLA   A+E  GGP I    GR D S     PEEGRLP A     A HLR VFYRMGL+DK+IVALSG HT+G++RPERSG+
Sbjct:   14 EVERARRDLRALIASKSCAPIMLRLAWHDAGTYDKAT----KTGGPNGSIRFPQEYSHAANAGIKIAIDLLEPMKQKHPKITYADLYQLAGVVAVEVTGGPTIDYVPGRRDSS---DSPEEGRLPDA--KKGAAHLREVFYRMGLSDKDIVALSGGHTLGKARPERSGF 173          
BLAST of CX295033 vs. ExPASy Swiss-Prot
Match: APX3_ORYSI (Probable L-ascorbate peroxidase 3 OS=Oryza sativa subsp. indica GN=APX3 PE=2 SV=1)

HSP 1 Score: 174.481 bits (441), Expect = 4.702e-43
Identity = 91/169 (53.85%), Postives = 116/169 (68.64%), Query Frame = 3
Query:  144 QLKSAREDIRELLKSTFCHPILVRLGWHDAGTYDKNIEEWPRRGGANASLRFEVELKHAANAGLVNALKLIQPIKDKYSGVTYADLFQLASATAIEEAGGPKIPMKYGRVDVSGPEQCPEEGRLPAAGPPSPAEHLRNVFYRMGLNDKEIVALSGAHTVGRSRPERSGW 650
            +++ AR D+R L+ S  C PI++RL WHDAGTYDK      + GG N S+RF  E  HAANAG+  A+ L++P+K ++  +TYADL+QLA   A+E  GGP I    GR D S     PEEGRLP A     A HLR VFYRMGL+DK+IVALSG HT+G++RPERSG+
Sbjct:   14 EVERARRDLRALIASKSCAPIMLRLAWHDAGTYDKAT----KTGGPNGSIRFPQEYSHAANAGIKIAIDLLEPMKQRHPKITYADLYQLAGVVAVEVTGGPTIDYVPGRRDSS---DSPEEGRLPDA--KKGAAHLREVFYRMGLSDKDIVALSGGHTLGKARPERSGF 173          
BLAST of CX295033 vs. ExPASy Swiss-Prot
Match: APX4_ORYSJ (Probable L-ascorbate peroxidase 4 OS=Oryza sativa subsp. japonica GN=APX4 PE=2 SV=1)

HSP 1 Score: 172.555 bits (436), Expect = 1.787e-42
Identity = 91/169 (53.85%), Postives = 114/169 (67.46%), Query Frame = 3
Query:  144 QLKSAREDIRELLKSTFCHPILVRLGWHDAGTYDKNIEEWPRRGGANASLRFEVELKHAANAGLVNALKLIQPIKDKYSGVTYADLFQLASATAIEEAGGPKIPMKYGRVDVSGPEQCPEEGRLPAAGPPSPAEHLRNVFYRMGLNDKEIVALSGAHTVGRSRPERSGW 650
            Q+  AR  +R L+ S  C PI++RL WHDAGTYD N     + GGAN S+R+E E  H +NAGL  A+ L++PIK K   +TYADL+QLA   A+E  GGP +    GR D S    CP EGRLP A     A HLR++FYRMGL+DK+IVALSG HT+GR+ PERSG+
Sbjct:   13 QVDRARRHLRALISSKGCAPIMLRLAWHDAGTYDVNT----KTGGANGSIRYEEEYTHGSNAGLKIAIDLLEPIKAKSPKITYADLYQLAGVVAVEVTGGPTVEFIPGRRDSS---VCPREGRLPDA--KKGALHLRDIFYRMGLSDKDIVALSGGHTLGRAHPERSGF 172          
BLAST of CX295033 vs. ExPASy Swiss-Prot
Match: APX3_ARATH (L-ascorbate peroxidase 3, peroxisomal OS=Arabidopsis thaliana GN=APX3 PE=1 SV=1)

HSP 1 Score: 164.851 bits (416), Expect = 3.725e-40
Identity = 88/174 (50.57%), Postives = 113/174 (64.94%), Query Frame = 3
Query:  144 QLKSAREDIRELLKSTFCHPILVRLGWHDAGTYDKNIEEWPRRGGANASLRFEVELKHAANAGLVNALKLIQPIKDKYSGVTYADLFQLASATAIEEAGGPKIPMKYGRVDVSGPEQCPEEGRLPAAGPPSPAEHLRNVFYRMGLNDKEIVALSGAHTVGRSRPERSGWGKPET 665
            ++  AR ++R L+ +  C PI++RL WHDAGTYD       + GG N S+R E E  H AN+GL  AL L + +K K+  +TYADL+QLA   A+E  GGP I    GR D      CP+EGRLP A      +HLR+VFYRMGL+DK+IVALSG HT+GR+ PERSG+  P T
Sbjct:   13 EITKARRELRSLIANKNCAPIMLRLAWHDAGTYDAQ----SKTGGPNGSIRNEEEHTHGANSGLKIALDLCEGVKAKHPKITYADLYQLAGVVAVEVTGGPDIVFVPGRKD---SNVCPKEGRLPDA--KQGFQHLRDVFYRMGLSDKDIVALSGGHTLGRAHPERSGFDGPWT 177          
The following BLAST results are available for this feature:
BLAST of CX295033 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 83
Match NameE-valueIdentityDescription
APXS_ARATH3.793e-9377.57L-ascorbate peroxidase S, chloroplastic/mitochondr... [more]
APXT_ARATH1.142e-8975.85L-ascorbate peroxidase T, chloroplastic OS=Arabido... [more]
APX6_ORYSJ1.263e-8882.29Probable L-ascorbate peroxidase 6, chloroplastic O... [more]
APX8_ORYSJ1.699e-8782.61Probable L-ascorbate peroxidase 8, chloroplastic O... [more]
APX7_ORYSJ2.016e-8678.13Probable L-ascorbate peroxidase 7, chloroplastic O... [more]
APX5_ORYSJ1.399e-7975.52Probable L-ascorbate peroxidase 5, chloroplastic O... [more]
APX3_ORYSJ2.110e-4354.44Probable L-ascorbate peroxidase 3 OS=Oryza sativa ... [more]
APX3_ORYSI4.702e-4353.85Probable L-ascorbate peroxidase 3 OS=Oryza sativa ... [more]
APX4_ORYSJ1.787e-4253.85Probable L-ascorbate peroxidase 4 OS=Oryza sativa ... [more]
APX3_ARATH3.725e-4050.57L-ascorbate peroxidase 3, peroxisomal OS=Arabidops... [more]

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Properties
Property NameValue
Genbank descriptionC05065H04SK DroRLeaf1 Citrus clementina cDNA clone C05065H04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX295033 ID=CX295033; Name=CX295033; organism=Citrus clementina; type=EST; length=687bp
CTTCTTCACTCTCTTTCTCTCTCTCCTCTTCTTCCTCCCTCAAATGCCTC
AGATTCTCTCCTCTCATCAGCCAGAGGAGATCGTCTGTGAACAGAGGATA
TAGCACCGTACCTACGACGAAATGTGCGGCGTCGGATCCTGATCAGTTGA
AGAGTGCTAGAGAAGATATTAGGGAGCTTCTCAAGTCTACATTTTGCCAT
CCTATTTTGGTTCGTCTAGGATGGCATGATGCTGGTACTTATGACAAGAA
CATTGAGGAGTGGCCTCGAAGGGGAGGAGCTAATGCAAGTCTTAGATTTG
AGGTTGAGCTAAAACACGCAGCCAATGCTGGGCTTGTGAATGCATTGAAA
CTGATTCAACCTATCAAGGACAAATATTCCGGTGTCACATATGCAGACTT
ATTCCAGTTGGCTAGCGCTACTGCTATAGAGGAAGCCGGGGGTCCTAAGA
TCCCAATGAAGTATGGAAGAGTGGATGTCTCAGGACCTGAGCAGTGCCCT
GAAGAAGGAAGGCTTCCTGCTGCTGGGCCTCCATCACCTGCTGAACATTT
AAGAAATGTCTTTTATAGAATGGGATTAAATGACAAGGAAATAGTTGCCT
TATCTGGTGCACACACAGTGGGAAGGTCTAGACCTGAACGAAGTGGTTGG
GGCAAGCCAGAAACAAGTACACGAAAGATGGACCAGG
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