CX295050

Overview
NameCX295050
Unique NameCX295050
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length733
Libraries
Library NameType
DroRLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14470 contig Ccv1_Contig14470:58..790. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX295050 vs. ExPASy Swiss-Prot
Match: SGAT_ARATH (Serine--glyoxylate aminotransferase OS=Arabidopsis thaliana GN=AGT1 PE=1 SV=2)

HSP 1 Score: 433.721 bits (1114), Expect = 4.840e-121
Identity = 207/238 (86.97%), Postives = 227/238 (95.38%), Query Frame = 1
Query:   19 VRKLLDEYRHPALFLVDGVSSICAIDFRMDEWGIDVALTGSQKALSLPTGMGIVCASPKALEASKTAKSVRVFFDWKDYIKFYNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAWGLKNCTQKEEWFSDTVTAVIVPPHINSSEIVRRAWQRYNLSLGLGLNKVAGKVFRIGHLGHLNELQLLGCLAGVEMILKDVGYPVKLGSGVAAASAYLQNNIPM 732
            VR LLD Y+HPAL LVDGVSSICA+DFRMDEWG+DVALTGSQKALSLPTG+GIVCASPKALEA+KT+KS++VFFDW DY+KFY LGT+WPYTPSIQLLYGLRAALDLIFEEGLEN+I RH RLGKATRLAVEAWGLKNCTQKEEW S+TVTAV+VPPHI+ SEIVRRAWQRYNLSLGLGLNKVAGKVFRIGHLG++NELQLLGCLAGVEMILKDVGYPV +GSGVAAAS YLQ++IP+
Sbjct:  159 VRTLLDHYKHPALLLVDGVSSICALDFRMDEWGVDVALTGSQKALSLPTGLGIVCASPKALEATKTSKSLKVFFDWNDYLKFYKLGTYWPYTPSIQLLYGLRAALDLIFEEGLENIIARHARLGKATRLAVEAWGLKNCTQKEEWISNTVTAVMVPPHIDGSEIVRRAWQRYNLSLGLGLNKVAGKVFRIGHLGNVNELQLLGCLAGVEMILKDVGYPVVMGSGVAAASTYLQHHIPL 396          
BLAST of CX295050 vs. ExPASy Swiss-Prot
Match: SGAA_METEA (Serine--glyoxylate aminotransferase OS=Methylobacterium extorquens (strain ATCC 14718 / DSM 1338 / AM1) GN=sgaA PE=3 SV=2)

HSP 1 Score: 266.929 bits (681), Expect = 7.836e-71
Identity = 136/240 (56.67%), Postives = 172/240 (71.67%), Query Frame = 1
Query:   19 VRKLLDEYRHPALFLVDGVSSICAIDFRMDEWGIDVALTGSQKALSLPTGMGIVCASPKALEAS-----KTAKSVRVFFDWKDYIKFYNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAWGLKNCTQKEEWFSDTVTAVIVPPHINSSEIVRRAWQRYNLSLGLGLNKVAGKVFRIGHLGHLNELQLLGCLAGVEMILKDVGYPVKLGSGVAAASAYLQNN 723
            VRK +D   HPAL  VDGVSSI ++ F+ DEW +D A+ GSQK L LP G+G++C S KAL+A+     +  +  RV+FDW+D  K    G F PYTP + LLYGLR AL  +FEEGLENV  RH  LG+ATR AV AWGLK C +  EW SDTVTA++ P  +++++I++ A+ RYNL+LG GL++VAGKVFRIGH+G LNEL LLG +AG EM L D G  V  GSGVAAAS+YL+ N
Sbjct:  159 VRKAIDAAGHPALLFVDGVSSIGSLPFKADEWKVDCAIAGSQKGLMLPAGLGVICVSQKALKAAEGQSGRNDRLARVYFDWEDQKKQNPTGYF-PYTPPLPLLYGLREALACLFEEGLENVYHRHAVLGEATRQAVAAWGLKTCAKSPEWNSDTVTAILAPEGVDAAKIIKHAYVRYNLALGAGLSQVAGKVFRIGHVGDLNELSLLGAIAGAEMSLIDNGVKVTPGSGVAAASSYLREN 397          
BLAST of CX295050 vs. ExPASy Swiss-Prot
Match: SGAA_HYPME (Serine--glyoxylate aminotransferase OS=Hyphomicrobium methylovorum GN=sgaA PE=3 SV=2)

HSP 1 Score: 259.225 bits (661), Expect = 1.634e-68
Identity = 131/237 (55.27%), Postives = 168/237 (70.89%), Query Frame = 1
Query:   19 VRKLLDEYRHPALFLVDGVSSICAIDFRMDEWGIDVALTGSQKALSLPTGMGIVCASPKALEA--SKTAKSVRVFFDWKDYIKFYNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAWGLKNCTQKEEWFSDTVTAVIVPPHINSSEIVRRAWQRYNLSLGLGLNKVAGKVFRIGHLGHLNELQLLGCLAGVEMILKDVGYPVKLGSGVAAASAYLQNN 723
            VRK LD  +HPAL +VDGVSS+ ++D RM EWG+D  ++GSQK   LPTG+GI+  S KAL+   SK  +  R FF ++D IK  + G F+PYTP+ QLL GLR +LDL+F EGL+NV  RH RL    R AV+AWGLK C ++ +W+SDTV+A++VP  I+S+ I + A+ RYN S GLGLNKVAGKVFRIGHLG L+E+ + G L   EM LKD G  +KLGSG  AA+ Y   N
Sbjct:  154 VRKALDAAKHPALLMVDGVSSVGSLDMRMGEWGVDCCVSGSQKGFMLPTGLGILAVSQKALDINKSKNGRMNRCFFSFEDMIKTNDQG-FFPYTPATQLLRGLRTSLDLLFAEGLDNVFARHTRLASGVRAAVDAWGLKLCAKEPKWYSDTVSAILVPEGIDSNAITKTAYYRYNTSFGLGLNKVAGKVFRIGHLGMLDEVMIGGALFAAEMALKDNGVNLKLGSGTGAAAEYFSKN 389          
BLAST of CX295050 vs. ExPASy Swiss-Prot
Match: Y959_METJA (Uncharacterized aminotransferase MJ0959 OS=Methanocaldococcus jannaschii GN=MJ0959 PE=3 SV=1)

HSP 1 Score: 154.836 bits (390), Expect = 4.340e-37
Identity = 93/224 (41.52%), Postives = 129/224 (57.59%), Query Frame = 1
Query:   46 HPALFLVDGVSSICAIDFRMDEWGIDVALTGSQKALSLPTGMGIVCASPKALEA-SKTAKSVRVFFDWKDYIKFYNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAWGLKNCTQKEEWFSDTVTAVIVPPHINSSEIVRRAWQRYNLSLGLGLNKVAGKVFRIGHLGHLNELQLLGCLAGVEMILKDVGYPVKLGSGVAAASAYL 714
            + AL++VD VSS+      +D++ ID+ +TGSQK L+ P G+  +  S KA E   K    V  + D   Y K+Y      PYTPS+ L Y L  ALDL+ EEG+EN ++RH RL KATR  +EA G++    KE   S TVT+   P  I  S+       +YN+ +  G   +AGK+FRIGH+G   E ++L  LA VE+ LK++G+ VK  SGV  A   L
Sbjct:  161 YDALYIVDTVSSLGGDYVNVDKFHIDICVTGSQKCLAAPPGLAAITVSEKAWEVIKKNDDKVGFYLDLLAYKKYYEEKKQTPYTPSVNLTYALNVALDLVLEEGIENRVKRHERLAKATRAGLEAMGIE-LFAKERARSVTVTSAKYPEGIEDSKFRGILSNKYNIVVAGGQKHLAGKIFRIGHMGICGEKEVLATLACVELALKELGFEVK-ESGVEVAKEVL 382          
BLAST of CX295050 vs. ExPASy Swiss-Prot
Match: DHSS_SYNP1 (Soluble hydrogenase, small subunit OS=Synechococcus sp. (strain PCC 6716) PE=3 SV=1)

HSP 1 Score: 142.124 bits (357), Expect = 2.911e-33
Identity = 84/222 (37.84%), Postives = 131/222 (59.01%), Query Frame = 1
Query:   52 ALFLVDGVSSICAIDFRMDEWGIDVALTGSQKALSLPTGMGIVCASPKALEASKTAKSVRVFFDWKDYIKFYNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAWGLKNCTQKEEWFSDTVTAVIVPPHINSSEIVRRAWQRYNLSLGLGLNKVAGKVFRIGHLGHLNELQLLGCLAGVEMILKDVGYP-VKLGSGVAAASAYL 714
            AL +VD V+S+ A+   +DEWG+DV  +GSQK   +P G+  V  SPKA EA KTA   + + D   Y K     T  P+TP + L + L+ AL+++  EGLE + +RH+RL +ATR A++A  L      +   S  +TAV  P  + +  I     +R++++L  G + + G++FRIGHLG + +  +L  ++ +E +L ++GY     G+GVAAAS  L
Sbjct:  163 ALIIVDAVTSLGAVSVPIDEWGLDVVGSGSQKGYMIPPGLAFVSVSPKAWEAYKTATLPKFYLDLGKYRKDAAKHT-TPFTPPVNLFFALKTALEMMQAEGLEAIFQRHQRLMQATRAAMKALNLP-LYAADSCASPAITAV-APQGVEAENIRSLMKKRFDIALAGGQDHLKGQIFRIGHLGFVGDRDILAAVSALEAVLAELGYTNFTPGAGVAAASRVL 381          
BLAST of CX295050 vs. ExPASy Swiss-Prot
Match: DHSS_ANACY (Soluble hydrogenase 42 kDa subunit OS=Anabaena cylindrica PE=1 SV=1)

HSP 1 Score: 139.813 bits (351), Expect = 1.445e-32
Identity = 82/224 (36.61%), Postives = 131/224 (58.48%), Query Frame = 1
Query:   52 ALFLVDGVSSICAIDFRMDEWGIDVALTGSQKALSLPTGMGIVCASPKALEASKTAKSVRVFFDWKDYIKFYNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAWGLKNCTQKEEWFSDTVTAVIVPPHINSSEIVRRAWQRYNLSLGLGLNKVAGKVFRIGHLGHLNELQLLGCLAGVEMILKDVGYP-VKLGSGVAAASAYLQN 720
            AL +VD V+S+ A +  +D  G+DV  +GSQK   +P G+G V  SPKA EA KTAK  + + D   Y K     T  P+TP + L+  L   L ++ +EGLE++  RH R   ATR A++A  L      +E  S  +TAV   P + + +I     +R++++L  G + ++ K+FR+GHLG +++  +L C+A +E++L ++G+     G+GVAAA+    N
Sbjct:  163 ALIIVDAVTSLGAYNVPVDALGLDVVASGSQKGYMIPPGLGFVSVSPKAWEAYKTAKLPKYYLDLGKYRKATAKNT-TPFTPPVNLMVALHTTLGMMKKEGLESIFTRHERQKNATRAAMKALNLP-LFAADECASPAITAV-ATPGMEADKIRSLMKKRFDIALAGGQDHLSNKIFRVGHLGFVSDRDILSCIASLEVVLLELGHENFNSGAGVAAAARVFSN 383          
BLAST of CX295050 vs. ExPASy Swiss-Prot
Match: SGAT_MAIZE (Serine--glyoxylate aminotransferase (Fragments) OS=Zea mays PE=1 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 5.694e-21
Identity = 75/193 (38.86%), Postives = 82/193 (42.49%), Query Frame = 1
Query:  103 MDEWGIDVALTGSQKALSLPTGMGIVCASPKALEASKTAKSVRVFFDWKDYIKFYNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAWGLKNCTQKEEWFSDTVTAVIVPPHINSSEIVRRAWQRYNLSLGLGLNKVA-GKVFRIGHLGHLNELQLLGCLAGVEMILKDVGYPVK 678
            MDEWG+DVALTGSQKALS PTGMG+VCASP            RVFFDWKDY++     T+W Y  ++ L                               LAVEAWGL N                                RYNLSLGLGLNKVA GKVFR                        DVGYPVK
Sbjct:   47 MDEWGVDVALTGSQKALSFPTGMGLVCASP------------RVFFDWKDYLR-----TYWHYDQALDL------------------------------ELAVEAWGLSN--------------------------------RYNLSLGLGLNKVAGGKVFR------------------------DVGYPVK 136          
BLAST of CX295050 vs. ExPASy Swiss-Prot
Match: PUCG_BACSU (Purine catabolism protein pucG OS=Bacillus subtilis GN=pucG PE=2 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 1.074e-19
Identity = 70/244 (28.69%), Postives = 117/244 (47.95%), Query Frame = 1
Query:   52 ALFLVDGVSSICAIDFRMDEWGIDVALTGSQKALSLPTGMG----------IVCASPK-----ALEASKTAKS-----VRVFFDWKDYIKFYNLGTFWPYTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAWGLKNCTQKEEWFSDTVTAVIVPPHINSSEIVRRAWQRYNLSLGLGLNKVAGKVFRIGHLGH-LNELQLLGCLAGVEMILKDVGYPVKLGSGVAAASAYLQN 720
            ALF+VD V++I   + ++DEW ID A+ G+QK LS+P+GM           ++ A  K     A +A + A S        +FD      +++      +T +  +LY LR  + L+ EEGLE   ERHR    A    ++A GL+     +      VT V +P  I+   +      ++ + +      +AGK++RIG +G+   +  +L  LAG+E +L      ++ G  + AA    +N
Sbjct:  167 ALFIVDAVATIGGCEVKVDEWKIDAAIGGTQKCLSVPSGMAPITYNERVADVIAARKKVERGIATQADRAALSGNRPITSNYFDLSQLEDYWSERRLNHHTEATTMLYALREGVRLVLEEGLETRFERHRHHEAALAAGIKAMGLR-LFGDDSCKMPVVTCVEIPGGIDGESVRDMLLAQFGIEIASSFGPLAGKIWRIGTMGYSCRKENVLFVLAGLEAVLLRHNAGIEAGKALQAALDVYEN 409          
BLAST of CX295050 vs. ExPASy Swiss-Prot
Match: SPYA_FELCA (Serine--pyruvate aminotransferase, mitochondrial OS=Felis catus GN=AGXT PE=2 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 4.081e-19
Identity = 66/196 (33.67%), Postives = 93/196 (47.45%), Query Frame = 1
Query:   40 YRHPALFLVDGVSSICAIDFRMDEWGIDVALTGSQKALSLPTGMGIVCASPKALEASKTAKSVRVFFDWKDYIKFYNLGTFWP---------YTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAWGLKNCTQKEEWFSDTVTAVIVPPHINSSEIVRRAWQRYNLSLGLGLNKVAGKVFRIGHLG 600
            +R+  L LVD V+S+C     MD+ GIDV  +GSQK L+ P G  ++  S KA     T K+  V F    Y+    L   W          +T  +  LY LR +L LI E+GLEN   +HR +       ++  GL+   +       TVT V VP   +  +IV      +++ +  GL    GKV RIG LG
Sbjct:  196 HRYNCLLLVDSVASLCGTPIYMDQQGIDVLYSGSQKVLNSPPGTSLISFSDKAKNKIYTRKTKPVSF----YLDMKWLANIWGCDGKPRIYHHTTPVVSLYSLRESLALIAEQGLENSWRQHREVTAYLHGRLQGLGLQLFVKDPALRLPTVTTVAVPAGYDWRDIVNYVMDHFDIEITGGLGPSMGKVLRIGLLG 387          
BLAST of CX295050 vs. ExPASy Swiss-Prot
Match: SPYA_RAT (Serine--pyruvate aminotransferase, mitochondrial OS=Rattus norvegicus GN=Agxt PE=1 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 1.551e-18
Identity = 65/197 (32.99%), Postives = 92/197 (46.70%), Query Frame = 1
Query:   40 YRHPALFLVDGVSSICAIDFRMDEWGIDVALTGSQKALSLPTGMGIVCASPKALEASKTAKSVRVFFDWKDYIKFYNLGTFWP---------YTPSIQLLYGLRAALDLIFEEGLENVIERHRRLGKATRLAVEAWGLKNCTQKEEWFSDTVTAVIVPPHINSSEIVRRAWQRYNLSLGLGLNKVAGKVFRIGHLGH 603
            +R+  L LVD V+S+  +   MD+ GID+  +GSQK L+ P G+ ++  + KA     + K+  V F    Y     L   W          +T  +  LY LR +L LI E+GLEN   RHR         +   GLK   +  E    T+T V VP   N  +IV      +N+ +  GL     KV RIG LG+
Sbjct:  196 HRYQCLLLVDSVASLGGVPIYMDQQGIDILYSGSQKVLNAPPGISLISFNDKAKSKVYSRKTKPVSF----YTDITYLSKLWGCEGKTRVIHHTLPVISLYCLRESLALISEQGLENSWRRHREATAHLHKCLRELGLKFFVKDPEIRLPTITTVTVPAGYNWRDIVSYVLDHFNIEISGGLGPSEDKVLRIGLLGY 388          
The following BLAST results are available for this feature:
BLAST of CX295050 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 17
Match NameE-valueIdentityDescription
SGAT_ARATH4.840e-12186.97Serine--glyoxylate aminotransferase OS=Arabidopsis... [more]
SGAA_METEA7.836e-7156.67Serine--glyoxylate aminotransferase OS=Methylobact... [more]
SGAA_HYPME1.634e-6855.27Serine--glyoxylate aminotransferase OS=Hyphomicrob... [more]
Y959_METJA4.340e-3741.52Uncharacterized aminotransferase MJ0959 OS=Methano... [more]
DHSS_SYNP12.911e-3337.84Soluble hydrogenase, small subunit OS=Synechococcu... [more]
DHSS_ANACY1.445e-3236.61Soluble hydrogenase 42 kDa subunit OS=Anabaena cyl... [more]
SGAT_MAIZE5.694e-2138.86Serine--glyoxylate aminotransferase (Fragments) OS... [more]
PUCG_BACSU1.074e-1928.69Purine catabolism protein pucG OS=Bacillus subtili... [more]
SPYA_FELCA4.081e-1933.67Serine--pyruvate aminotransferase, mitochondrial O... [more]
SPYA_RAT1.551e-1832.99Serine--pyruvate aminotransferase, mitochondrial O... [more]

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Properties
Property NameValue
Genbank descriptionC05068A09SK DroRLeaf1 Citrus clementina cDNA clone C05068A09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX295050 ID=CX295050; Name=CX295050; organism=Citrus clementina; type=EST; length=733bp
GAGGCACAACTTGTCTAAGTGAGAAAACTTCTTGATGAATACAGGCACCC
GGCTCTTTTTCTCGTTGACGGGGTTTCCTCCATTTGTGCCATCGATTTCC
GTATGGATGAATGGGGCATAGATGTGGCTCTAACTGGCTCTCAGAAAGCT
CTTTCACTTCCTACTGGAATGGGGATTGTTTGTGCAAGCCCCAAAGCTCT
AGAGGCATCCAAAACTGCAAAATCTGTCAGAGTTTTCTTTGATTGGAAAG
ACTACATAAAGTTTTACAATTTGGGAACATTTTGGCCATATACCCCTTCC
ATCCAACTGCTGTATGGGCTGCGAGCAGCTTTGGATCTGATTTTTGAGGA
AGGGCTTGAAAATGTGATCGAAAGGCACCGTCGTTTGGGCAAAGCAACCA
GGCTTGCGGTGGAGGCATGGGGATTAAAGAACTGCACCCAGAAAGAAGAA
TGGTTCAGTGACACCGTGACTGCTGTGATTGTTCCTCCACATATCAATAG
TTCAGAAATTGTTAGAAGGGCATGGCAGAGATACAATCTAAGCTTAGGTC
TGGGCCTTAACAAAGTTGCTGGTAAAGTATTTAGAATCGGGCATCTCGGC
CACCTGAATGAGTTGCAATTGTTGGGCTGTCTCGCTGGTGTGGAGATGAT
ACTAAAAGACGTGGGCTACCCGGTTAAGCTGGGGAGCGGGGTTGCAGCTG
CTTCTGCATACCTACAGAACAACATTCCTATGA
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