CX295137

Overview
NameCX295137
Unique NameCX295137
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length478
Libraries
Library NameType
PhIFruit1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of CX295137 vs. ExPASy Swiss-Prot
Match: ATL1D_ARATH (RING-H2 finger protein ATL1D OS=Arabidopsis thaliana GN=ATL1D PE=2 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 4.273e-23
Identity = 56/91 (61.54%), Postives = 65/91 (71.43%), Query Frame = 2 
Query:   50 GETSCSNLEARRCYSMGSYQYVVADSELQVALCPRRGGSASVRFGKGRSAQNDNSSNDGDVEGKKINFRSKGESFSVSKIWQWS-KKSKFP 319
            GETS S+L+ RRC+SMGSYQY+VA+S+L VALCP                 N+   N+ DVEGKKIN RSKGESFSVSKIWQWS K+SKFP
Sbjct:  257 GETSSSSLDNRRCFSMGSYQYIVAESDLVVALCPN----------------NEGLKNNKDVEGKKINMRSKGESFSVSKIWQWSNKRSKFP 331
[Close]
BLAST of CX295137 vs. ExPASy Swiss-Prot
Match: ATL5I_ARATH (RING-H2 finger protein ATL5I OS=Arabidopsis thaliana GN=ATL5I PE=2 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 2.683e-17
Identity = 45/89 (50.56%), Postives = 59/89 (66.29%), Query Frame = 2 
Query:   50 GETSCSNLEARRCYSMGSYQYVVADSELQVALCPRRGGSASVRFGKGRSAQNDNSSNDGDVEGKKINFRSKGESFSVSKIWQWSKKSKF 316
            GETS SNL+ARRC+SMGSYQY++ +SEL+V     R     +   K +  +++ + N    + KKIN  +KGESFSVSKIW W KK KF
Sbjct:  258 GETSSSNLDARRCFSMGSYQYILGNSELKVPFANDR-----LPRLKPQDKESEQTGNSSSEDNKKINTVAKGESFSVSKIWLWPKKDKF 341
The following BLAST results are available for this feature:
BLAST of CX295137 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
ATL1D_ARATH4.273e-2361.54RING-H2 finger protein ATL1D OS=Arabidopsis thalia... [more]
ATL5I_ARATH2.683e-1750.56RING-H2 finger protein ATL5I OS=Arabidopsis thalia... [more]
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Properties
Property NameValue
Genbank descriptionC05069A02SK PhIFruit1 Citrus clementina cDNA clone C05069A02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX295137 ID=CX295137; Name=CX295137; organism=Citrus clementina; type=EST; length=478bp
GGATTCGGCCGAGGCCTCGTGCCGAATTCGGCACGAGGAAAGAGTGGAAG
GAGAGACCAGCTGTAGTAATTTGGAAGCTAGGAGATGTTACTCAATGGGA
TCCTACCAGTATGTGGTTGCTGATTCAGAGCTGCAAGTGGCCTTATGCCC
CAGAAGAGGTGGTAGTGCTAGTGTGAGGTTTGGTAAGGGAAGAAGTGCAC
AAAATGACAATTCCTCAAATGACGGTGATGTTGAGGGGAAGAAAATTAAC
TTTAGAAGTAAAGGTGAAAGCTTTTCTGTTTCCAAGATATGGCAATGGTC
TAAGAAGAGCAAGTTCCCAAGTTCTTCCGAAACCCATATGGGTTCCTCTT
CTGGTACCTTGGGCTTGCCAAGAGCCAATGATACCGAGAGTTCATGAAGG
TATTTTACTGTGTAGTTCACTTTAATCAATGAATCCACTTATAAAAAGCC
TTTCTTTTTAAAAAAAAAAAAAAAAAAA
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