CX295149

Overview
NameCX295149
Unique NameCX295149
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length662
Libraries
Library NameType
PhIFruit1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig618 contig Ccv1_Contig618:1..662. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX295149 vs. ExPASy Swiss-Prot
Match: TM111_DANRE (Transmembrane protein 111 OS=Danio rerio GN=tmem111 PE=2 SV=1)

HSP 1 Score: 172.94 bits (437), Expect = 1.273e-42
Identity = 86/190 (45.26%), Postives = 129/190 (67.89%), Query Frame = 3
Query:   96 MAE-DLVLDTAIRDWVLIPLSVVMVLIGILRYFVSKLMRSSQVPDPKIVKEGQVIVRARNLRAGANFIAPKSFRARRVYFCNEENGLLHMPKGQAQNAQAQMFSDPNMAMDMMKKNLSMIIPQTLTFAWVNFFFSGFVAAKIPFPLTQRFRSMLQNGIDLSTVDVSYVSSRSWYFLNLFGLRGLFSLILG 662
            MAE +L+LD+ IR WV++P+  +  L+G++R++VS L++S +    + V + QV++R+R LR    +I  +SF  R+ YF N+E+G     K +         +DP+M  DMMK N++ ++P  L   W+N+ FSGFV  K+PFPLT RF+ MLQ GI+L ++D S+VSS SWYFLN+FGLR ++SLILG
Sbjct:    1 MAEPELLLDSNIRLWVVLPIVFITFLVGVIRHYVSILLQSDKKLTLEQVSDSQVLIRSRVLRENGKYIPKQSFLMRKFYFNNQEDGFFKKTKRKV--VPPSPMTDPSMLTDMMKGNVTNVLPMILIGGWINWTFSGFVTTKVPFPLTLRFKPMLQQGIELLSLDASWVSSASWYFLNVFGLRSMYSLILG 188          
BLAST of CX295149 vs. ExPASy Swiss-Prot
Match: TM111_RAT (Transmembrane protein 111 OS=Rattus norvegicus GN=Tmem111 PE=2 SV=3)

HSP 1 Score: 172.17 bits (435), Expect = 2.171e-42
Identity = 83/186 (44.62%), Postives = 123/186 (66.13%), Query Frame = 3
Query:  105 DLVLDTAIRDWVLIPLSVVMVLIGILRYFVSKLMRSSQVPDPKIVKEGQVIVRARNLRAGANFIAPKSFRARRVYFCNEENGLLHMPKGQAQNAQAQMFSDPNMAMDMMKKNLSMIIPQTLTFAWVNFFFSGFVAAKIPFPLTQRFRSMLQNGIDLSTVDVSYVSSRSWYFLNLFGLRGLFSLILG 662
            +L+LD+ IR WV++P+ ++   +G++R++VS L++S +    + V + QV++R+R LR    +I  +SF  R+ YF N E+G     K +         +DP M  DMMK N++ ++P  L   W+N  FSGFV  K+PFPLT RF+ MLQ GI+L T+D S+VSS SWYFLN+FGLR ++SLILG
Sbjct:    5 ELLLDSNIRLWVVLPIVIITFFVGMIRHYVSILLQSDKKLTQEQVSDSQVLIRSRVLRENGKYIPKQSFLTRKYYFNNPEDGFFKKTKRKV--VPPSPMTDPTMLTDMMKGNVTNVLPMILIGGWINMTFSGFVTTKVPFPLTLRFKPMLQQGIELLTLDASWVSSASWYFLNVFGLRSIYSLILG 188          
BLAST of CX295149 vs. ExPASy Swiss-Prot
Match: TM111_PONAB (Transmembrane protein 111 OS=Pongo abelii GN=TMEM111 PE=2 SV=3)

HSP 1 Score: 172.17 bits (435), Expect = 2.171e-42
Identity = 83/186 (44.62%), Postives = 123/186 (66.13%), Query Frame = 3
Query:  105 DLVLDTAIRDWVLIPLSVVMVLIGILRYFVSKLMRSSQVPDPKIVKEGQVIVRARNLRAGANFIAPKSFRARRVYFCNEENGLLHMPKGQAQNAQAQMFSDPNMAMDMMKKNLSMIIPQTLTFAWVNFFFSGFVAAKIPFPLTQRFRSMLQNGIDLSTVDVSYVSSRSWYFLNLFGLRGLFSLILG 662
            +L+LD+ IR WV++P+ ++   +G++R++VS L++S +    + V + QV++R+R LR    +I  +SF  R+ YF N E+G     K +         +DP M  DMMK N++ ++P  L   W+N  FSGFV  K+PFPLT RF+ MLQ GI+L T+D S+VSS SWYFLN+FGLR ++SLILG
Sbjct:    5 ELLLDSNIRLWVVLPIVIITFFVGMIRHYVSILLQSDKKLTQEQVSDSQVLIRSRVLRENGKYIPKQSFLTRKYYFNNPEDGFFKKTKRKV--VPPSPMTDPTMLTDMMKGNVTNVLPMILIGGWINMTFSGFVTTKVPFPLTLRFKPMLQQGIELLTLDASWVSSASWYFLNVFGLRSIYSLILG 188          
BLAST of CX295149 vs. ExPASy Swiss-Prot
Match: TM111_MOUSE (Transmembrane protein 111 OS=Mus musculus GN=Tmem111 PE=2 SV=3)

HSP 1 Score: 172.17 bits (435), Expect = 2.171e-42
Identity = 83/186 (44.62%), Postives = 123/186 (66.13%), Query Frame = 3
Query:  105 DLVLDTAIRDWVLIPLSVVMVLIGILRYFVSKLMRSSQVPDPKIVKEGQVIVRARNLRAGANFIAPKSFRARRVYFCNEENGLLHMPKGQAQNAQAQMFSDPNMAMDMMKKNLSMIIPQTLTFAWVNFFFSGFVAAKIPFPLTQRFRSMLQNGIDLSTVDVSYVSSRSWYFLNLFGLRGLFSLILG 662
            +L+LD+ IR WV++P+ ++   +G++R++VS L++S +    + V + QV++R+R LR    +I  +SF  R+ YF N E+G     K +         +DP M  DMMK N++ ++P  L   W+N  FSGFV  K+PFPLT RF+ MLQ GI+L T+D S+VSS SWYFLN+FGLR ++SLILG
Sbjct:    5 ELLLDSNIRLWVVLPIVIITFFVGMIRHYVSILLQSDKKLTQEQVSDSQVLIRSRVLRENGKYIPKQSFLTRKYYFNNPEDGFFKKTKRKV--VPPSPMTDPTMLTDMMKGNVTNVLPMILIGGWINMTFSGFVTTKVPFPLTLRFKPMLQQGIELLTLDASWVSSASWYFLNVFGLRSIYSLILG 188          
BLAST of CX295149 vs. ExPASy Swiss-Prot
Match: TM111_HUMAN (Transmembrane protein 111 OS=Homo sapiens GN=TMEM111 PE=1 SV=3)

HSP 1 Score: 172.17 bits (435), Expect = 2.171e-42
Identity = 83/186 (44.62%), Postives = 123/186 (66.13%), Query Frame = 3
Query:  105 DLVLDTAIRDWVLIPLSVVMVLIGILRYFVSKLMRSSQVPDPKIVKEGQVIVRARNLRAGANFIAPKSFRARRVYFCNEENGLLHMPKGQAQNAQAQMFSDPNMAMDMMKKNLSMIIPQTLTFAWVNFFFSGFVAAKIPFPLTQRFRSMLQNGIDLSTVDVSYVSSRSWYFLNLFGLRGLFSLILG 662
            +L+LD+ IR WV++P+ ++   +G++R++VS L++S +    + V + QV++R+R LR    +I  +SF  R+ YF N E+G     K +         +DP M  DMMK N++ ++P  L   W+N  FSGFV  K+PFPLT RF+ MLQ GI+L T+D S+VSS SWYFLN+FGLR ++SLILG
Sbjct:    5 ELLLDSNIRLWVVLPIVIITFFVGMIRHYVSILLQSDKKLTQEQVSDSQVLIRSRVLRENGKYIPKQSFLTRKYYFNNPEDGFFKKTKRKV--VPPSPMTDPTMLTDMMKGNVTNVLPMILIGGWINMTFSGFVTTKVPFPLTLRFKPMLQQGIELLTLDASWVSSASWYFLNVFGLRSIYSLILG 188          
BLAST of CX295149 vs. ExPASy Swiss-Prot
Match: TM111_BOVIN (Transmembrane protein 111 OS=Bos taurus GN=TMEM111 PE=2 SV=3)

HSP 1 Score: 171.785 bits (434), Expect = 2.835e-42
Identity = 83/186 (44.62%), Postives = 123/186 (66.13%), Query Frame = 3
Query:  105 DLVLDTAIRDWVLIPLSVVMVLIGILRYFVSKLMRSSQVPDPKIVKEGQVIVRARNLRAGANFIAPKSFRARRVYFCNEENGLLHMPKGQAQNAQAQMFSDPNMAMDMMKKNLSMIIPQTLTFAWVNFFFSGFVAAKIPFPLTQRFRSMLQNGIDLSTVDVSYVSSRSWYFLNLFGLRGLFSLILG 662
            +L+LD+ IR WV++P+ ++   +G++R++VS L++S +    + V + QV++R+R LR    +I  +SF  R+ YF N E+G     K +         +DP M  DMMK N++ ++P  L   W+N  FSGFV  K+PFPLT RF+ MLQ GI+L T+D S+VSS SWYFLN+FGLR ++SLILG
Sbjct:    5 ELLLDSNIRLWVVLPIVIITFFVGMIRHYVSILLQSDKKLTQEQVSDSQVLIRSRVLRENGKYIPKQSFLTRKYYFNNPEDGFFKKTKRKV--VPPSPVTDPTMLTDMMKGNVTNVLPMILIGGWINMTFSGFVTTKVPFPLTLRFKPMLQQGIELLTLDASWVSSASWYFLNVFGLRSIYSLILG 188          
BLAST of CX295149 vs. ExPASy Swiss-Prot
Match: YNY3_SCHPO (UPF0347 membrane protein C1711.03 OS=Schizosaccharomyces pombe GN=SPBC1711.03 PE=2 SV=1)

HSP 1 Score: 151.754 bits (382), Expect = 3.037e-36
Identity = 81/192 (42.19%), Postives = 125/192 (65.10%), Query Frame = 3
Query:  102 EDLVLDTAIRDWVLIPLSVVMVLIGILRYFVSKLMRSSQVPDPKI-VKEGQVIVRARNLRAGANFIAPKSFRARRVYFCNE-ENGLLHMPKG-QAQNAQAQMFSDPNMA--MDMMKKNLSMIIPQTLTFAWVNFFFSGFVAAKIPFPLTQRFRSMLQNGIDLSTVDVSYVSSRSWYFLNLFGLRGLFSLILG 662
            + L+LD A+R+WVL+P+  VM+LIGILR+  + L++SS     K  ++E +++ RA  LRA +N + P+S  AR+ +     ++G    P    A  A   +  D  +   M+ MK N+ M++PQT+   W+N FFSGF+  K+PFPLT RF+S+ Q+G+    +DV +VSS SWYFLNLFGL+ +++L+LG
Sbjct:    2 QKLLLDPALRNWVLLPIMFVMILIGILRHNATILLQSSPKKLSKEEIREQRLLQRAYALRACSNSLLPESIEARKCFLIESLKSGKYLKPVDPNAPKAANPLMDDKTLEGLMESMKGNMLMVVPQTIIMTWINEFFSGFILLKLPFPLTLRFKSIFQSGVATQDLDVQWVSSISWYFLNLFGLKSVYALLLG 193          
BLAST of CX295149 vs. ExPASy Swiss-Prot
Match: TM111_DICDI (Transmembrane protein 111 homolog OS=Dictyostelium discoideum GN=tmem111 PE=3 SV=1)

HSP 1 Score: 142.51 bits (358), Expect = 1.842e-33
Identity = 82/200 (41.00%), Postives = 119/200 (59.50%), Query Frame = 3
Query:  108 LVLDTAIRDWVLIPLSVVMVLIGILRYFVSKLMR--SSQVPDPKIVKEGQVIVRARNLRAGANFIAPKSFRARRVYFCNE-----ENGLLHM--PKGQAQNAQAQMFS-----DPNMAMDMMKKNLSMIIPQTLTFAWVNFFFSGFVAAKIPF-PLTQRFRSMLQNGIDLSTVDVSYVSSRSWYFLNLFGLRGLFSLILG 662
            +VLD  IR+WV+IP+ +V+ ++  L+  +S++M+  S +  D +   + Q I R R L +  N I  KSF  R+ Y C         G+L    P  +  N    MF+     DP+   DM+K N+  +IPQ    +WVN FFSGFVA K+PF PLT RF++ LQ GI++ ++DVSYVSS SWYFL  FG  G+ +++LG
Sbjct:    6 IVLDVEIRNWVVIPILIVLFIVSALKLNISRIMQINSGKPQDVEKTMQMQTINRVRRLVSFYNRIPQKSFFIRKAYLCGTTGSKTNKGILSSIAPTQEDSNPMNMMFANSMFTDPSGITDMLKGNIMHLIPQVTMMSWVNHFFSGFVACKLPFFPLTIRFKTFLQRGIEMGSLDVSYVSSLSWYFLCWFGSEGINAILLG 205          
BLAST of CX295149 vs. ExPASy Swiss-Prot
Match: EMC3_YEAS6 (ER membrane protein complex subunit 3 OS=Saccharomyces cerevisiae (strain AWRI1631) GN=AIM27 PE=3 SV=2)

HSP 1 Score: 130.568 bits (327), Expect = 7.244e-30
Identity = 69/194 (35.57%), Postives = 116/194 (59.79%), Query Frame = 3
Query:  108 LVLDTAIRDWVLIPLSVVMVLIGILRYFVSKLMRSSQVPD--PKI-VKEGQVIVRARNLRAGANFIAPKSFRARRVYFCNEENGLLHMPKGQAQNAQA-----QMFSDPNMA---MDMMKKNLSMIIPQTLTFAWVNFFFSGFVAAKIPFPLTQRFRSMLQNGIDLSTVDVSYVSSRSWYFLNLFGLRGLFSLI 656
            ++LD  ++ WVL+P+S+VMVL G+L+ ++  L+  S   +  P++ + E Q +  A+ L      ++  +F A++ +   +     H+ K + Q           F+DPNM+   M+M K N++  IPQT+   WVN FF+GF+  ++PFPLT +F+ MLQ GI    +DV +VSS SWYF+++ GL  +++LI
Sbjct:    1 MLLDDQLKYWVLLPISIVMVLTGVLKQYIMTLITGSSANEAQPRVKLTEWQYLQWAQLLIGNGGNLSSDAFAAKKEFLVKDLTEERHLAKAKQQGGSQAGEVPNPFNDPNMSNAMMNMAKGNMASFIPQTIIMWWVNHFFAGFILMQLPFPLTAKFKEMLQTGIICQDLDVRWVSSISWYFISVLGLNPVYNLI 194          
BLAST of CX295149 vs. ExPASy Swiss-Prot
Match: EMC3_YEAS1 (ER membrane protein complex subunit 3 OS=Saccharomyces cerevisiae (strain RM11-1a) GN=AIM27 PE=3 SV=2)

HSP 1 Score: 130.568 bits (327), Expect = 7.244e-30
Identity = 69/194 (35.57%), Postives = 116/194 (59.79%), Query Frame = 3
Query:  108 LVLDTAIRDWVLIPLSVVMVLIGILRYFVSKLMRSSQVPD--PKI-VKEGQVIVRARNLRAGANFIAPKSFRARRVYFCNEENGLLHMPKGQAQNAQA-----QMFSDPNMA---MDMMKKNLSMIIPQTLTFAWVNFFFSGFVAAKIPFPLTQRFRSMLQNGIDLSTVDVSYVSSRSWYFLNLFGLRGLFSLI 656
            ++LD  ++ WVL+P+S+VMVL G+L+ ++  L+  S   +  P++ + E Q +  A+ L      ++  +F A++ +   +     H+ K + Q           F+DPNM+   M+M K N++  IPQT+   WVN FF+GF+  ++PFPLT +F+ MLQ GI    +DV +VSS SWYF+++ GL  +++LI
Sbjct:    1 MLLDDQLKYWVLLPISIVMVLTGVLKQYIMTLITGSSANEAQPRVKLTEWQYLQWAQLLIGNGGNLSSDAFAAKKEFLVKDLTEERHLAKAKQQGGSQAGEVPNPFNDPNMSNAMMNMAKGNMASFIPQTIIMWWVNHFFAGFILMQLPFPLTAKFKEMLQTGIICQDLDVRWVSSISWYFISVLGLNPVYNLI 194          
The following BLAST results are available for this feature:
BLAST of CX295149 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 12
Match NameE-valueIdentityDescription
TM111_DANRE1.273e-4245.26Transmembrane protein 111 OS=Danio rerio GN=tmem11... [more]
TM111_RAT2.171e-4244.62Transmembrane protein 111 OS=Rattus norvegicus GN=... [more]
TM111_PONAB2.171e-4244.62Transmembrane protein 111 OS=Pongo abelii GN=TMEM1... [more]
TM111_MOUSE2.171e-4244.62Transmembrane protein 111 OS=Mus musculus GN=Tmem1... [more]
TM111_HUMAN2.171e-4244.62Transmembrane protein 111 OS=Homo sapiens GN=TMEM1... [more]
TM111_BOVIN2.835e-4244.62Transmembrane protein 111 OS=Bos taurus GN=TMEM111... [more]
YNY3_SCHPO3.037e-3642.19UPF0347 membrane protein C1711.03 OS=Schizosacchar... [more]
TM111_DICDI1.842e-3341.00Transmembrane protein 111 homolog OS=Dictyostelium... [more]
EMC3_YEAS67.244e-3035.57ER membrane protein complex subunit 3 OS=Saccharom... [more]
EMC3_YEAS17.244e-3035.57ER membrane protein complex subunit 3 OS=Saccharom... [more]

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Properties
Property NameValue
Genbank descriptionC05069B02SK PhIFruit1 Citrus clementina cDNA clone C05069B02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX295149 ID=CX295149; Name=CX295149; organism=Citrus clementina; type=EST; length=662bp
GAGGCTCCCTTGACCCCAAATCAAAACCACATAAACAAAAACGAAAAAAA
TCGAAATCGAGCACCCACAGGCACAGGCACAGGTACAGAGCATCAATGGC
GGAAGATCTGGTGCTTGACACGGCGATCAGAGACTGGGTGCTGATACCGC
TGTCAGTTGTGATGGTCCTCATCGGAATTCTCCGTTACTTCGTCTCTAAG
CTTATGCGCTCCTCTCAAGTGCCCGATCCTAAAATCGTTAAAGAAGGACA
AGTGATTGTTAGGGCGCGGAATTTGCGTGCTGGCGCTAATTTTATCGCTC
CAAAGTCTTTTCGCGCTCGCAGAGTTTATTTCTGTAACGAGGAAAATGGA
TTGTTGCATATGCCAAAGGGTCAGGCACAAAATGCGCAAGCGCAAATGTT
TTCCGATCCTAACATGGCAATGGACATGATGAAGAAAAATCTTTCAATGA
TCATACCCCAGACCCTTACTTTTGCTTGGGTCAACTTTTTCTTCTCTGGG
TTTGTTGCAGCCAAGATACCATTCCCACTGACTCAGAGGTTCAGGTCAAT
GTTACAAAATGGGATTGACTTGAGCACTGTTGATGTAAGCTATGTCAGTA
GTCGTTCATGGTACTTCCTCAATTTGTTTGGACTGAGGGGTTTATTTAGC
CTCATTCTGGGG
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