CX295168 | Citrus Genome Database

Overview


Name	CX295168
Unique Name	CX295168
Type	EST
Organism	Citrus clementina (Clementine)
Sequence length	705

Libraries


Library Name	Type
PhIFruit1	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Alignments

Feature Name	Type	Location	Analysis
CX295168_ssr136	microsatellite	CX295168_ssr136:136..147.	BLAST: Citrus ESTs to TAIR9
Ccv1_Contig11842	contig	Ccv1_Contig11842:643..1347.	BLAST: Citrus Unigene V1 Contigs to TAIR9

Homology

[Close]

BLAST of CX295168 vs. ExPASy Swiss-Prot
Match: ATPH_VITVI (ATP synthase subunit c, chloroplastic OS=Vitis vinifera GN=atpH PE=3 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 3.591e-25
Identity = 65/81 (80.25%), Postives = 65/81 (80.25%), Query Frame = 1

Query:  433 MNPLISAASVIAAGLAVGLASIXXXXXXXXXXXXXXXXIARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV 675
            MNPLISAASVIAAGLAVGLASI                IARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV
Sbjct:    1 MNPLISAASVIAAGLAVGLASIGPGVGQGTAAGQAVEGIARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV 81

[Close]

BLAST of CX295168 vs. ExPASy Swiss-Prot
Match: ATPH_TRACE (ATP synthase subunit c, chloroplastic OS=Trachelium caeruleum GN=atpH PE=3 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 3.591e-25
Identity = 65/81 (80.25%), Postives = 65/81 (80.25%), Query Frame = 1

Query:  433 MNPLISAASVIAAGLAVGLASIXXXXXXXXXXXXXXXXIARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV 675
            MNPLISAASVIAAGLAVGLASI                IARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV
Sbjct:    1 MNPLISAASVIAAGLAVGLASIGPGIGQGTAAGQAVEGIARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV 81

[Close]

BLAST of CX295168 vs. ExPASy Swiss-Prot
Match: ATPH_TOBAC (ATP synthase subunit c, chloroplastic OS=Nicotiana tabacum GN=atpH PE=3 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 3.591e-25
Identity = 65/81 (80.25%), Postives = 65/81 (80.25%), Query Frame = 1

Query:  433 MNPLISAASVIAAGLAVGLASIXXXXXXXXXXXXXXXXIARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV 675
            MNPLISAASVIAAGLAVGLASI                IARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV
Sbjct:    1 MNPLISAASVIAAGLAVGLASIGPGVGQGTAAGQAVEGIARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV 81

[Close]

BLAST of CX295168 vs. ExPASy Swiss-Prot
Match: ATPH_SOLTU (ATP synthase subunit c, chloroplastic OS=Solanum tuberosum GN=atpH PE=3 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 3.591e-25
Identity = 65/81 (80.25%), Postives = 65/81 (80.25%), Query Frame = 1

Query:  433 MNPLISAASVIAAGLAVGLASIXXXXXXXXXXXXXXXXIARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV 675
            MNPLISAASVIAAGLAVGLASI                IARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV
Sbjct:    1 MNPLISAASVIAAGLAVGLASIGPGIGQGTAAGQAVEGIARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV 81

[Close]

BLAST of CX295168 vs. ExPASy Swiss-Prot
Match: ATPH_SOLLC (ATP synthase subunit c, chloroplastic OS=Solanum lycopersicum GN=atpH PE=3 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 3.591e-25
Identity = 65/81 (80.25%), Postives = 65/81 (80.25%), Query Frame = 1

Query:  433 MNPLISAASVIAAGLAVGLASIXXXXXXXXXXXXXXXXIARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV 675
            MNPLISAASVIAAGLAVGLASI                IARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV
Sbjct:    1 MNPLISAASVIAAGLAVGLASIGPGVGQGTAAGQAVEGIARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV 81

[Close]

BLAST of CX295168 vs. ExPASy Swiss-Prot
Match: ATPH_RANMC (ATP synthase subunit c, chloroplastic OS=Ranunculus macranthus GN=atpH PE=3 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 3.591e-25
Identity = 65/81 (80.25%), Postives = 65/81 (80.25%), Query Frame = 1

Query:  433 MNPLISAASVIAAGLAVGLASIXXXXXXXXXXXXXXXXIARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV 675
            MNPLISAASVIAAGLAVGLASI                IARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV
Sbjct:    1 MNPLISAASVIAAGLAVGLASIGPGVGQGTAAGQAVEGIARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV 81

[Close]

BLAST of CX295168 vs. ExPASy Swiss-Prot
Match: ATPH_PSINU (ATP synthase subunit c, chloroplastic OS=Psilotum nudum GN=atpH PE=3 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 3.591e-25
Identity = 65/81 (80.25%), Postives = 65/81 (80.25%), Query Frame = 1

Query:  433 MNPLISAASVIAAGLAVGLASIXXXXXXXXXXXXXXXXIARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV 675
            MNPLISAASVIAAGLAVGLASI                IARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV
Sbjct:    1 MNPLISAASVIAAGLAVGLASIGPGVGQGTAAGQAVEGIARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV 81

[Close]

BLAST of CX295168 vs. ExPASy Swiss-Prot
Match: ATPH_POPTR (ATP synthase subunit c, chloroplastic OS=Populus trichocarpa GN=atpH PE=3 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 3.591e-25
Identity = 65/81 (80.25%), Postives = 65/81 (80.25%), Query Frame = 1

Query:  433 MNPLISAASVIAAGLAVGLASIXXXXXXXXXXXXXXXXIARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV 675
            MNPLISAASVIAAGLAVGLASI                IARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV
Sbjct:    1 MNPLISAASVIAAGLAVGLASIGPGVGQGTAAGQAVEGIARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV 81

[Close]

BLAST of CX295168 vs. ExPASy Swiss-Prot
Match: ATPH_POPAL (ATP synthase subunit c, chloroplastic OS=Populus alba GN=atpH PE=3 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 3.591e-25
Identity = 65/81 (80.25%), Postives = 65/81 (80.25%), Query Frame = 1

Query:  433 MNPLISAASVIAAGLAVGLASIXXXXXXXXXXXXXXXXIARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV 675
            MNPLISAASVIAAGLAVGLASI                IARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV
Sbjct:    1 MNPLISAASVIAAGLAVGLASIGPGVGQGTAAGQAVEGIARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV 81

[Close]

BLAST of CX295168 vs. ExPASy Swiss-Prot
Match: ATPH_PLAOC (ATP synthase subunit c, chloroplastic OS=Platanus occidentalis GN=atpH PE=3 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 3.591e-25
Identity = 65/81 (80.25%), Postives = 65/81 (80.25%), Query Frame = 1

Query:  433 MNPLISAASVIAAGLAVGLASIXXXXXXXXXXXXXXXXIARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV 675
            MNPLISAASVIAAGLAVGLASI                IARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV
Sbjct:    1 MNPLISAASVIAAGLAVGLASIGPGVGQGTAAGQAVEGIARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV 81

The following BLAST results are available for this feature:

BLAST of CX295168 vs. ExPASy Swiss-Prot

BLAST of CX295168 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 173


Match Name	E-value	Identity	Description
ATPH_VITVI	3.591e-25	80.25	ATP synthase subunit c, chloroplastic OS=Vitis vin...	[more]
ATPH_TRACE	3.591e-25	80.25	ATP synthase subunit c, chloroplastic OS=Tracheliu...	[more]
ATPH_TOBAC	3.591e-25	80.25	ATP synthase subunit c, chloroplastic OS=Nicotiana...	[more]
ATPH_SOLTU	3.591e-25	80.25	ATP synthase subunit c, chloroplastic OS=Solanum t...	[more]
ATPH_SOLLC	3.591e-25	80.25	ATP synthase subunit c, chloroplastic OS=Solanum l...	[more]
ATPH_RANMC	3.591e-25	80.25	ATP synthase subunit c, chloroplastic OS=Ranunculu...	[more]
ATPH_PSINU	3.591e-25	80.25	ATP synthase subunit c, chloroplastic OS=Psilotum ...	[more]
ATPH_POPTR	3.591e-25	80.25	ATP synthase subunit c, chloroplastic OS=Populus t...	[more]
ATPH_POPAL	3.591e-25	80.25	ATP synthase subunit c, chloroplastic OS=Populus a...	[more]
ATPH_PLAOC	3.591e-25	80.25	ATP synthase subunit c, chloroplastic OS=Platanus ...	[more]

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Properties


Property Name	Value
Genbank description	C05069C09SK PhIFruit1 Citrus clementina cDNA clone C05069C09, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>CX295168 ID=CX295168; Name=CX295168; organism=Citrus clementina; type=EST; length=705bp
GGACTAAAGATATATCTAATCCACCCTACTCTTGTGATTATTGTGAATTT
CGATAGGGATTCTAATAGAAATTGTTCGATTTCGTCTTTGCTTTGATGCT
TTGACTGGGAATTGAATCAATAAAAATAAAGAGATGAAAGAAAGAAAACG
AACGAAGAATTCAAAAAAGGGTTCCGAAAAAAGAAATGGAAGAACAAAAG
TCGTATGGATTTACAAAAATCCTGTGTTGTGCCTGTGGATCGAAACTAAA
AAAGAGATATCTAAAAAGTTTTGATGGTTCAATAATAATATTATTATTAC
GCCAATTGGGAGTTCTTAGTTACTTCGGCTGGGCGAATCCTAGTGACGGA
ATAATTAAGTCATAATTTATTGGACGATTGTATCATTAACGATTTCTTTA
GTTTTTCTTTATTTTAGTGCGAGGGACTTATCATGAATCCACTGATTTCT
GCCGCTTCCGTTATTGCTGCTGGGTTGGCTGTTGGGCTTGCTTCTATTGG
ACCTGGAGTTGGTCAAGGTACTGCTGCGGGCCAGGCAGTAGAAGGGATCG
CGAGACAGCCCGAGGCGGAGGGAAAAATACGAGGTACTTTATTGCTTAGT
CTGGCTTTTATGGAAGCTTTAACAATTTATGGGCTGGTTGTAGCATTAGC
ACTTTTATTTGCGAATCCTTTTGTTTATCCTAGAATAGGAAGGGCATTTA
CATTT