CX295212

Overview
NameCX295212
Unique NameCX295212
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length664
Libraries
Library NameType
PhIFruit1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX295212 vs. ExPASy Swiss-Prot
Match: MTHR_ORYSJ (Probable methylenetetrahydrofolate reductase OS=Oryza sativa subsp. japonica GN=Os03g0815200 PE=2 SV=1)

HSP 1 Score: 218.394 bits (555), Expect = 2.642e-56
Identity = 105/109 (96.33%), Postives = 107/109 (98.17%), Query Frame = 3
Query:  213 VDAGADLIITQLFYDTDMFLKFVNDCRQIGITCPIVPGIMPINNYKGFLRMTGFCKTKIPAEITAALEPIKDNEEAVKAYGIHLGAEMCKKILAHGIKTVHLYTLNMEK 539
            VDAGADLIITQLFYDTD+FLKFVNDCRQIGITCPIVPGIMPINNYKGFLRMTGFCKTKIPAEITAALEPIKDNEEAVKAYGIHLG EMCKKILA GIKT+HLYTLNMEK
Sbjct:  183 VDAGADLIITQLFYDTDIFLKFVNDCRQIGITCPIVPGIMPINNYKGFLRMTGFCKTKIPAEITAALEPIKDNEEAVKAYGIHLGTEMCKKILATGIKTLHLYTLNMEK 291          
BLAST of CX295212 vs. ExPASy Swiss-Prot
Match: MTHR2_ARATH (Methylenetetrahydrofolate reductase 2 OS=Arabidopsis thaliana GN=MTHFR2 PE=1 SV=2)

HSP 1 Score: 211.46 bits (537), Expect = 3.229e-54
Identity = 96/109 (88.07%), Postives = 106/109 (97.25%), Query Frame = 3
Query:  213 VDAGADLIITQLFYDTDMFLKFVNDCRQIGITCPIVPGIMPINNYKGFLRMTGFCKTKIPAEITAALEPIKDNEEAVKAYGIHLGAEMCKKILAHGIKTVHLYTLNMEK 539
            +DAGADLI+TQLFYDTD+FLKFVNDCRQIGI+CPIVPGIMPINNY+GFLRMTGFCKTKIP E+ AALEPIKDNEEAVKAYGIHLG EMCKK+LAHG+K++HLYTLNMEK
Sbjct:  183 IDAGADLIVTQLFYDTDIFLKFVNDCRQIGISCPIVPGIMPINNYRGFLRMTGFCKTKIPVEVMAALEPIKDNEEAVKAYGIHLGTEMCKKMLAHGVKSLHLYTLNMEK 291          
BLAST of CX295212 vs. ExPASy Swiss-Prot
Match: MTHR1_MAIZE (Methylenetetrahydrofolate reductase 1 OS=Zea mays PE=2 SV=1)

HSP 1 Score: 211.46 bits (537), Expect = 3.229e-54
Identity = 99/109 (90.83%), Postives = 106/109 (97.25%), Query Frame = 3
Query:  213 VDAGADLIITQLFYDTDMFLKFVNDCRQIGITCPIVPGIMPINNYKGFLRMTGFCKTKIPAEITAALEPIKDNEEAVKAYGIHLGAEMCKKILAHGIKTVHLYTLNMEK 539
            VDAGADLI+TQLFYDTD+FLKFVNDCRQIGITCPIVPGIMPINNYKGFLRMTGFCKTKIP+EITAAL+PIKDNEEAV+ YGIHLG EMCKKILA GIKT+HLYTLNM+K
Sbjct:  183 VDAGADLIVTQLFYDTDIFLKFVNDCRQIGITCPIVPGIMPINNYKGFLRMTGFCKTKIPSEITAALDPIKDNEEAVRQYGIHLGTEMCKKILATGIKTLHLYTLNMDK 291          
BLAST of CX295212 vs. ExPASy Swiss-Prot
Match: MTHR1_ARATH (Methylenetetrahydrofolate reductase 1 OS=Arabidopsis thaliana GN=MTHFR1 PE=1 SV=1)

HSP 1 Score: 203.756 bits (517), Expect = 6.733e-52
Identity = 94/109 (86.24%), Postives = 103/109 (94.50%), Query Frame = 3
Query:  213 VDAGADLIITQLFYDTDMFLKFVNDCRQIGITCPIVPGIMPINNYKGFLRMTGFCKTKIPAEITAALEPIKDNEEAVKAYGIHLGAEMCKKILAHGIKTVHLYTLNMEK 539
            VDAGADLI+TQLFYDTD+FLKFVNDCRQIGI CPIVPGIMPI+NYKGFLRM GFCKTKIPAE+TAALEPIKDN+EAVKAYGIH   EMCKKILAHGI ++HLYTLN++K
Sbjct:  183 VDAGADLIVTQLFYDTDIFLKFVNDCRQIGINCPIVPGIMPISNYKGFLRMAGFCKTKIPAELTAALEPIKDNDEAVKAYGIHFATEMCKKILAHGITSLHLYTLNVDK 291          
BLAST of CX295212 vs. ExPASy Swiss-Prot
Match: MTHR_HUMAN (Methylenetetrahydrofolate reductase OS=Homo sapiens GN=MTHFR PE=1 SV=3)

HSP 1 Score: 117.472 bits (293), Expect = 6.346e-26
Identity = 54/109 (49.54%), Postives = 72/109 (66.06%), Query Frame = 3
Query:  213 VDAGADLIITQLFYDTDMFLKFVNDCRQIGITCPIVPGIMPINNYKGFLRMTGFCKTKIPAEITAALEPIKDNEEAVKAYGIHLGAEMCKKILAHG-IKTVHLYTLNME 536
            V AGAD IITQLF++ D F +FV  C  +GITCPIVPGI PI  Y    ++    K ++P EI   +EPIKDN+ A++ YGI L   +C+++LA G +  +H YTLN E
Sbjct:  218 VSAGADFIITQLFFEADTFFRFVKACTDMGITCPIVPGIFPIQGYHSLRQLVKLSKLEVPQEIKDVIEPIKDNDAAIRNYGIELAVSLCQELLASGLVPGLHFYTLNRE 326          
BLAST of CX295212 vs. ExPASy Swiss-Prot
Match: MTHR_MACFA (Methylenetetrahydrofolate reductase OS=Macaca fascicularis GN=MTHFR PE=2 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 2.412e-25
Identity = 54/109 (49.54%), Postives = 71/109 (65.14%), Query Frame = 3
Query:  213 VDAGADLIITQLFYDTDMFLKFVNDCRQIGITCPIVPGIMPINNYKGFLRMTGFCKTKIPAEITAALEPIKDNEEAVKAYGIHLGAEMCKKILAHG-IKTVHLYTLNME 536
            V AGAD IITQLF++ D F +FV  C  +GITCPIVPGI PI  Y    ++    K ++P EI   +EPIKDN+ A++ YGI L   +C ++LA G +  +H YTLN E
Sbjct:  218 VSAGADFIITQLFFEADTFFRFVKACTDMGITCPIVPGIFPIQGYHSLRQLVKQSKLEVPQEIKDVIEPIKDNDAAIRNYGIELAVSLCHELLASGLVPGLHFYTLNRE 326          
BLAST of CX295212 vs. ExPASy Swiss-Prot
Match: MTHR_BOVIN (Methylenetetrahydrofolate reductase OS=Bos taurus GN=MTHFR PE=2 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 2.666e-24
Identity = 50/109 (45.87%), Postives = 72/109 (66.06%), Query Frame = 3
Query:  213 VDAGADLIITQLFYDTDMFLKFVNDCRQIGITCPIVPGIMPINNYKGFLRMTGFCKTKIPAEITAALEPIKDNEEAVKAYGIHLGAEMCKKILAHG-IKTVHLYTLNME 536
            V AGAD IITQLF++ + F +FV  C +IGITCP++PGI PI  Y    ++    K ++P +I   +EPIKDN+ A++ YGI     +C+++LA G +  +H YTLN E
Sbjct:  217 VAAGADFIITQLFFEAETFFRFVKACSEIGITCPVLPGIFPIQGYHSLRQLVKLSKLEVPQQIKDVIEPIKDNDAAIRNYGIEQAVSLCQELLASGLVPGLHFYTLNRE 325          
BLAST of CX295212 vs. ExPASy Swiss-Prot
Match: MTHR1_SCHPO (Methylenetetrahydrofolate reductase 1 OS=Schizosaccharomyces pombe GN=met9 PE=1 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 3.482e-24
Identity = 53/113 (46.90%), Postives = 72/113 (63.72%), Query Frame = 3
Query:  201 LIL*VDAGADLIITQLFYDTDMFLKFVNDCRQIGITCPIVPGIMPINNYKGFLRMTGFCKTKIPAEITAALEPIKDNEEAVKAYGIHLGAEMCKKILAHGIKTVHLYTLNMEK 539
            L L VD GAD I+TQ+FYD D F+ +V+  R  GI  PI PGIMPI  +  F+R   +   KIP      L P+KD++E V+  G+ L  EMC+K++A GI  +H YT+N+EK
Sbjct:  170 LKLKVDEGADFIVTQMFYDVDNFIAWVDKVRAAGINIPIFPGIMPIQAWDSFIRRAKWSGVKIPQHFMDTLVPVKDDDEGVRERGVELIVEMCRKLIASGITRLHFYTMNLEK 282          
BLAST of CX295212 vs. ExPASy Swiss-Prot
Match: MTHR_CAEEL (Probable methylenetetrahydrofolate reductase OS=Caenorhabditis elegans GN=C06A8.1 PE=1 SV=2)

HSP 1 Score: 111.309 bits (277), Expect = 4.548e-24
Identity = 53/108 (49.07%), Postives = 75/108 (69.44%), Query Frame = 3
Query:  216 DAGADLIITQLFYDTDMFLKFVNDCRQIGITCPIVPGIMPINNYKGFLRMTGFCKTKIPAEITAALEPIKDNEEAVKAYGIHLGAEMCKKILAHG-IKTVHLYTLNME 536
            DAGA+ +ITQLF++ + F KFV DCR+IGIT PI+PGIMPI  Y+   R+    + +IP  I   LEPIK +++AV+ YG     EMC+++L +G   ++HLYT+N E
Sbjct:  232 DAGANFVITQLFFEAETFEKFVRDCREIGITQPIIPGIMPIMGYESIKRIAKLSQLEIPQHILDDLEPIKHDDDAVQKYGTERCIEMCRRLLDNGTAPSIHLYTMNRE 339          
BLAST of CX295212 vs. ExPASy Swiss-Prot
Match: MTHR_MOUSE (Methylenetetrahydrofolate reductase OS=Mus musculus GN=Mthfr PE=2 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 1.013e-23
Identity = 50/109 (45.87%), Postives = 70/109 (64.22%), Query Frame = 3
Query:  213 VDAGADLIITQLFYDTDMFLKFVNDCRQIGITCPIVPGIMPINNYKGFLRMTGFCKTKIPAEITAALEPIKDNEEAVKAYGIHLGAEMCKKILAHG-IKTVHLYTLNME 536
            V AGAD IITQLF++   F  FV  C +IGI+CPI+PGI PI  Y    ++    K ++P +I   +EPIKDN+ A++ YGI L   +C+++L  G +  +H YTLN E
Sbjct:  217 VSAGADFIITQLFFEASTFFSFVKACTEIGISCPILPGIFPIQGYTSLRQLVKLSKLEVPQKIKDVIEPIKDNDAAIRNYGIELAVRLCRELLDSGLVPGLHFYTLNRE 325          
The following BLAST results are available for this feature:
BLAST of CX295212 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 24
Match NameE-valueIdentityDescription
MTHR_ORYSJ2.642e-5696.33Probable methylenetetrahydrofolate reductase OS=Or... [more]
MTHR2_ARATH3.229e-5488.07Methylenetetrahydrofolate reductase 2 OS=Arabidops... [more]
MTHR1_MAIZE3.229e-5490.83Methylenetetrahydrofolate reductase 1 OS=Zea mays ... [more]
MTHR1_ARATH6.733e-5286.24Methylenetetrahydrofolate reductase 1 OS=Arabidops... [more]
MTHR_HUMAN6.346e-2649.54Methylenetetrahydrofolate reductase OS=Homo sapien... [more]
MTHR_MACFA2.412e-2549.54Methylenetetrahydrofolate reductase OS=Macaca fasc... [more]
MTHR_BOVIN2.666e-2445.87Methylenetetrahydrofolate reductase OS=Bos taurus ... [more]
MTHR1_SCHPO3.482e-2446.90Methylenetetrahydrofolate reductase 1 OS=Schizosac... [more]
MTHR_CAEEL4.548e-2449.07Probable methylenetetrahydrofolate reductase OS=Ca... [more]
MTHR_MOUSE1.013e-2345.87Methylenetetrahydrofolate reductase OS=Mus musculu... [more]

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Properties
Property NameValue
Genbank descriptionC05069H02SK PhIFruit1 Citrus clementina cDNA clone C05069H02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX295212 ID=CX295212; Name=CX295212; organism=Citrus clementina; type=EST; length=664bp
CGGCACGAGGATCATATCAAAGTGATCTTCTTTATCTGAAGAAAAAGGTC
TCTCTAATGTGTATTTCTTGTAATGCTTTGTCGTATACTTTGCGTGATCA
AAACATTAAAATCTTAATTAACAGCTGATGAAAATAGAAAATTGGTGATT
TATGTTGTTTGTCATTAATATAACAACGGATGGCTTGTGCTGATGGTCAA
CTTATTTTGTAGGTGGATGCTGGTGCAGATCTAATTATCACTCAACTATT
CTATGATACTGACATGTTTCTTAAGTTTGTGAATGACTGTCGCCAAATTG
GAATTACCTGCCCCATTGTTCCTGGAATTATGCCCATTAATAACTATAAG
GGTTTCTTGCGCATGACTGGCTTTTGCAAAACAAAGATACCAGCTGAGAT
TACTGCTGCCTTGGAGCCTATAAAGGACAATGAAGAAGCTGTTAAAGCCT
ATGGAATTCACCTTGGAGCTGAAATGTGCAAGAAAATTTTAGCTCATGGG
ATTAAGACTGTGCATCTTTATACTCTAAACATGGAGAAATCTGCATTAGC
TATATTATTGGTATCCTTATTGGGATTGTTATGGTGTTGTTTGTGATTAG
TACTTATCACTAAAGCTTGGTGTTCCTAATGATAGACATACATTTGCAGA
ATCTTGGTTTGATT
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