CX295218

Overview
NameCX295218
Unique NameCX295218
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length708
Libraries
Library NameType
PhIFruit1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX295218 vs. ExPASy Swiss-Prot
Match: ODO1_CAEBR (2-oxoglutarate dehydrogenase, mitochondrial OS=Caenorhabditis briggsae GN=CBG01737 PE=3 SV=1)

HSP 1 Score: 128.257 bits (321), Expect = 4.099e-29
Identity = 61/142 (42.96%), Postives = 93/142 (65.49%), Query Frame = 2
Query:   11 KQGTRFKRLIKDQNEHSDLEEGIRRLILCSGKVYYELYEERKK-HSASDIAICRVEQLCPFPYDLVQRELKRYPNAEVVWSQEEPMNMGAYTYIAPRLCTAMKAVDRGTMEDIKYVGRAPSAASATGFYQVHVKEQSELMQK 433
            + G+ F+R+I +    S     ++RL+ C+GKVYY++   RK     +D+A+ RVEQL PFPYDLVQ+E ++Y  AE++W+QEE  NMGA++++ PR+ + +    R T    KY GR PS++ ATG    H++EQ E+M K
Sbjct:  876 QSGSNFQRIIPETGAPSQNPPNVQRLVFCTGKVYYDMVAARKHVGKENDVALVRVEQLSPFPYDLVQQECRKYQGAEIIWAQEEHKNMGAWSFVQPRINSLLSIDGRAT----KYAGRLPSSSPATGNKYTHMQEQKEMMSK 1013          
BLAST of CX295218 vs. ExPASy Swiss-Prot
Match: ODO1_XENLA (2-oxoglutarate dehydrogenase, mitochondrial OS=Xenopus laevis GN=ogdh PE=2 SV=1)

HSP 1 Score: 127.102 bits (318), Expect = 9.132e-29
Identity = 64/140 (45.71%), Postives = 89/140 (63.57%), Query Frame = 2
Query:   20 TRFKRLIKDQNEHSDLEEGIRRLILCSGKVYYELYEERK-KHSASDIAICRVEQLCPFPYDLVQRELKRYPNAEVVWSQEEPMNMGAYTYIAPRLCTAMKAVDRGTMEDIKYVGRAPSAASATGFYQVHVKEQSELMQKA 436
            T F+R+I +    S   EG++RLI C+GKVYYEL +ER  +    D+AI RVEQL PFP+DLV++E+++YPNA++VW QEE  N G Y Y+ PRL T +        + + Y GR P+AA ATG  + H+ E    +  A
Sbjct:  877 THFQRIIPEAGPASQNPEGVKRLIFCTGKVYYELTKERSGRDMEGDVAIARVEQLSPFPFDLVEKEVQKYPNADLVWCQEEHKNQGYYDYVKPRLRTTIHRT-----KPVWYAGRDPAAAPATGNKKTHLTELRRFLDTA 1011          
BLAST of CX295218 vs. ExPASy Swiss-Prot
Match: ODO1_CAEEL (2-oxoglutarate dehydrogenase, mitochondrial OS=Caenorhabditis elegans GN=T22B11.5 PE=1 SV=2)

HSP 1 Score: 125.176 bits (313), Expect = 3.470e-28
Identity = 60/142 (42.25%), Postives = 93/142 (65.49%), Query Frame = 2
Query:   11 KQGTRFKRLIKDQNEHSDLEEGIRRLILCSGKVYYELYEERKK-HSASDIAICRVEQLCPFPYDLVQRELKRYPNAEVVWSQEEPMNMGAYTYIAPRLCTAMKAVDRGTMEDIKYVGRAPSAASATGFYQVHVKEQSELMQK 433
            + G+ F+R+I +    S     ++R++ C+GKVYY++   RK     +D+A+ RVEQL PFPYDLVQ+E ++Y  AE++W+QEE  NMGA++++ PR+ + +    R T    KY GR PS++ ATG    H++EQ E+M K
Sbjct:  878 QSGSNFQRVIPETGAPSQNPPDVKRVVFCTGKVYYDMVAARKHVGKENDVALVRVEQLSPFPYDLVQQECRKYQGAEILWAQEEHKNMGAWSFVQPRINSLLSIDGRAT----KYAGRLPSSSPATGNKFTHMQEQKEMMSK 1015          
BLAST of CX295218 vs. ExPASy Swiss-Prot
Match: ODO1_MACFA (2-oxoglutarate dehydrogenase, mitochondrial OS=Macaca fascicularis GN=OGDH PE=2 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 2.249e-27
Identity = 61/149 (40.94%), Postives = 89/149 (59.73%), Query Frame = 2
Query:   17 GTRFKRLIKDQNEHSDLEEGIRRLILCSGKVYYELYEERK-KHSASDIAICRVEQLCPFPYDLVQRELKRYPNAEVVWSQEEPMNMGAYTYIAPRLCTAMKAVDRGTMEDIKYVGRAPSAASATGFYQVHVKEQSELMQKAIQPEPIGN 460
            GT F+R+I +    +   E ++RL+ C+GKVYY+L  ERK +     +AI R+EQL PFP+DL+ +E+++YPNAE+ W QEE  N G Y Y+ PRL T +        + + Y GR P+AA ATG  + H+ E   L+  A   +   N
Sbjct:  878 GTHFQRVIPEDGPAAQNPENVKRLLFCTGKVYYDLTRERKARDMVGQVAITRIEQLSPFPFDLLLKEVQKYPNAELAWCQEEHKNQGYYDYVKPRLRTTISRA-----KPVWYAGRDPAAAPATGNKKTHLTELQRLLDTAFDLDVFKN 1021          
BLAST of CX295218 vs. ExPASy Swiss-Prot
Match: ODO1_HUMAN (2-oxoglutarate dehydrogenase, mitochondrial OS=Homo sapiens GN=OGDH PE=1 SV=3)

HSP 1 Score: 122.479 bits (306), Expect = 2.249e-27
Identity = 61/149 (40.94%), Postives = 89/149 (59.73%), Query Frame = 2
Query:   17 GTRFKRLIKDQNEHSDLEEGIRRLILCSGKVYYELYEERK-KHSASDIAICRVEQLCPFPYDLVQRELKRYPNAEVVWSQEEPMNMGAYTYIAPRLCTAMKAVDRGTMEDIKYVGRAPSAASATGFYQVHVKEQSELMQKAIQPEPIGN 460
            GT F+R+I +    +   E ++RL+ C+GKVYY+L  ERK +     +AI R+EQL PFP+DL+ +E+++YPNAE+ W QEE  N G Y Y+ PRL T +        + + Y GR P+AA ATG  + H+ E   L+  A   +   N
Sbjct:  878 GTHFQRVIPEDGPAAQNPENVKRLLFCTGKVYYDLTRERKARDMVGQVAITRIEQLSPFPFDLLLKEVQKYPNAELAWCQEEHKNQGYYDYVKPRLRTTISRA-----KPVWYAGRDPAAAPATGNKKTHLTELQRLLDTAFDLDVFKN 1021          
BLAST of CX295218 vs. ExPASy Swiss-Prot
Match: ODO1_RAT (2-oxoglutarate dehydrogenase, mitochondrial OS=Rattus norvegicus GN=Ogdh PE=1 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 5.011e-27
Identity = 61/141 (43.26%), Postives = 89/141 (63.12%), Query Frame = 2
Query:   17 GTRFKRLIKDQNEHSDLEEGIRRLILCSGKVYYELYEERK-KHSASDIAICRVEQLCPFPYDLVQRELKRYPNAEVVWSQEEPMNMGAYTYIAPRLCTAMKAVDRGTMEDIKYVGRAPSAASATGFYQVHVKEQSELMQKA 436
            GT F+R+I +    +   + ++RL+ C+GKVYY+L  ERK +  A ++AI R+EQL PFP+DL+ +E ++YPNAE+ W QEE  N G Y Y+ PRL T    +DR   + + Y GR P+AA ATG  + H+ E    +  A
Sbjct:  878 GTHFQRVIPEDGPAAQNPDKVKRLLFCTGKVYYDLTRERKARDMAEEVAITRIEQLSPFPFDLLLKEAQKYPNAELAWCQEEHKNQGYYDYVKPRLRT---TIDRA--KPVWYAGRDPAAAPATGNKKTHLTELQRFLDTA 1013          
BLAST of CX295218 vs. ExPASy Swiss-Prot
Match: ODO1_PONAB (2-oxoglutarate dehydrogenase, mitochondrial OS=Pongo abelii GN=OGDH PE=2 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 1.116e-26
Identity = 59/141 (41.84%), Postives = 87/141 (61.70%), Query Frame = 2
Query:   17 GTRFKRLIKDQNEHSDLEEGIRRLILCSGKVYYELYEERK-KHSASDIAICRVEQLCPFPYDLVQRELKRYPNAEVVWSQEEPMNMGAYTYIAPRLCTAMKAVDRGTMEDIKYVGRAPSAASATGFYQVHVKEQSELMQKA 436
            GT F+R+I +    +   E ++RL+ C+GKVYY+L  ERK +     +AI R+EQL PFP+DL+ +E+++YP+AE+ W QEE  N G Y Y+ PRL T +        + + Y GR P+AA ATG  + H+ E   L+  A
Sbjct:  878 GTHFQRVIPEDGPAAQNPENVKRLLFCTGKVYYDLTRERKARDMVGQVAITRIEQLSPFPFDLLLKEVQKYPSAELAWCQEEHKNQGYYDYVKPRLRTTISRA-----KPVWYAGRDPAAAPATGNKKTHLTELQRLLDTA 1013          
BLAST of CX295218 vs. ExPASy Swiss-Prot
Match: OGDHL_PONAB (2-oxoglutarate dehydrogenase-like, mitochondrial OS=Pongo abelii GN=OGDHL PE=2 SV=2)

HSP 1 Score: 119.783 bits (299), Expect = 1.458e-26
Identity = 60/141 (42.55%), Postives = 86/141 (60.99%), Query Frame = 2
Query:   17 GTRFKRLIKDQNEHSDLEEGIRRLILCSGKVYYELYEERKKHSASD-IAICRVEQLCPFPYDLVQRELKRYPNAEVVWSQEEPMNMGAYTYIAPRLCTAMKAVDRGTMEDIKYVGRAPSAASATGFYQVHVKEQSELMQKA 436
            GT F+R+I +    +   E +RRLI C+GKVYY+L +ER      + +AI R+EQ+ PFP+DL+++E ++YP AE+ W QEE  NMG Y YI+PR  T ++         I YVGR P+AA ATG    H+    + +  A
Sbjct:  864 GTSFQRVIPEDGAAARAPEQVRRLIFCTGKVYYDLVKERSSQGLEEKVAITRLEQISPFPFDLIKQEAEKYPGAELAWCQEEHKNMGYYDYISPRFMTILRRA-----RPIWYVGRDPAAAPATGNRNTHLVSLKKFLDTA 999          
BLAST of CX295218 vs. ExPASy Swiss-Prot
Match: ODO1_MOUSE (2-oxoglutarate dehydrogenase, mitochondrial OS=Mus musculus GN=Ogdh PE=1 SV=3)

HSP 1 Score: 119.013 bits (297), Expect = 2.487e-26
Identity = 60/141 (42.55%), Postives = 88/141 (62.41%), Query Frame = 2
Query:   17 GTRFKRLIKDQNEHSDLEEGIRRLILCSGKVYYELYEERK-KHSASDIAICRVEQLCPFPYDLVQRELKRYPNAEVVWSQEEPMNMGAYTYIAPRLCTAMKAVDRGTMEDIKYVGRAPSAASATGFYQVHVKEQSELMQKA 436
            GT F+R+I +    +     ++RL+ C+GKVYY+L  ERK ++   ++AI R+EQL PFP+DL+ +E ++YPNAE+ W QEE  N G Y Y+ PRL T    +DR   + + Y GR P+AA ATG  + H+ E    +  A
Sbjct:  878 GTHFQRVIPENGPAAQDPHKVKRLLFCTGKVYYDLTRERKARNMEEEVAITRIEQLSPFPFDLLLKEAQKYPNAELAWCQEEHKNQGYYDYVKPRLRT---TIDRA--KPVWYAGRDPAAAPATGNKKTHLTELQRFLDTA 1013          
BLAST of CX295218 vs. ExPASy Swiss-Prot
Match: OGDHL_HUMAN (2-oxoglutarate dehydrogenase-like, mitochondrial OS=Homo sapiens GN=OGDHL PE=2 SV=3)

HSP 1 Score: 118.242 bits (295), Expect = 4.242e-26
Identity = 59/141 (41.84%), Postives = 86/141 (60.99%), Query Frame = 2
Query:   17 GTRFKRLIKDQNEHSDLEEGIRRLILCSGKVYYELYEERKKHSASD-IAICRVEQLCPFPYDLVQRELKRYPNAEVVWSQEEPMNMGAYTYIAPRLCTAMKAVDRGTMEDIKYVGRAPSAASATGFYQVHVKEQSELMQKA 436
            GT F+R+I +    +   E ++RLI C+GKVYY+L +ER      + +AI R+EQ+ PFP+DL+++E ++YP AE+ W QEE  NMG Y YI+PR  T ++         I YVGR P+AA ATG    H+    + +  A
Sbjct:  864 GTSFQRVIPEDGAAARAPEQVQRLIFCTGKVYYDLVKERSSQDLEEKVAITRLEQISPFPFDLIKQEAEKYPGAELAWCQEEHKNMGYYDYISPRFMTILRRA-----RPIWYVGRDPAAAPATGNRNTHLVSLKKFLDTA 999          
The following BLAST results are available for this feature:
BLAST of CX295218 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 108
Match NameE-valueIdentityDescription
ODO1_CAEBR4.099e-2942.962-oxoglutarate dehydrogenase, mitochondrial OS=Cae... [more]
ODO1_XENLA9.132e-2945.712-oxoglutarate dehydrogenase, mitochondrial OS=Xen... [more]
ODO1_CAEEL3.470e-2842.252-oxoglutarate dehydrogenase, mitochondrial OS=Cae... [more]
ODO1_MACFA2.249e-2740.942-oxoglutarate dehydrogenase, mitochondrial OS=Mac... [more]
ODO1_HUMAN2.249e-2740.942-oxoglutarate dehydrogenase, mitochondrial OS=Hom... [more]
ODO1_RAT5.011e-2743.262-oxoglutarate dehydrogenase, mitochondrial OS=Rat... [more]
ODO1_PONAB1.116e-2641.842-oxoglutarate dehydrogenase, mitochondrial OS=Pon... [more]
OGDHL_PONAB1.458e-2642.552-oxoglutarate dehydrogenase-like, mitochondrial O... [more]
ODO1_MOUSE2.487e-2642.552-oxoglutarate dehydrogenase, mitochondrial OS=Mus... [more]
OGDHL_HUMAN4.242e-2641.842-oxoglutarate dehydrogenase-like, mitochondrial O... [more]

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Properties
Property NameValue
Genbank descriptionC05069H08SK PhIFruit1 Citrus clementina cDNA clone C05069H08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX295218 ID=CX295218; Name=CX295218; organism=Citrus clementina; type=EST; length=708bp
GGGTTTTCACAAACAAGGGACTAGATTTAAACGGCTTATAAAGGATCAGA
ATGAGCACTCTGATCTTGAGGAGGGTATCAGACGTCTGATTCTTTGTTCT
GGAAAAGTCTATTATGAGCTTTATGAAGAGCGAAAGAAGCACAGTGCAAG
TGACATTGCTATTTGTAGGGTGGAACAGCTTTGTCCTTTCCCATATGACC
TTGTCCAGCGGGAGCTTAAACGATATCCAAATGCCGAGGTTGTTTGGAGC
CAGGAAGAGCCAATGAACATGGGTGCGTATACCTACATAGCACCTCGCCT
TTGCACTGCCATGAAAGCAGTGGATAGAGGAACCATGGAGGACATCAAAT
ATGTTGGCCGTGCTCCATCTGCTGCCTCAGCCACCGGCTTCTATCAGGTT
CACGTTAAAGAACAGTCTGAGCTAATGCAGAAAGCCATTCAACCCGAACC
AATTGGTAATCCTTTCTGAAGTCTAATAAACCCTTGAGACCATTATAAGT
AGATTTTTTACTGCACCCAGATAAAACAAGCTGTGCAGTCTGAATTCTTC
TTGAAACCTTTATTCCGCACATTTATTTTGATGTTTGCAATACATTTCTG
CCAATTTGTCCATCGTTTTGTATCCGTAGTCATCATCTCCCCTTCTTCGT
CACGATACAAAACAGTAAATGTACGGGGTCACCGTATATCGTGTCAATTA
TGAAATTT
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