CX295222

Overview
NameCX295222
Unique NameCX295222
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length773
Libraries
Library NameType
PhIFruit1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX295222 vs. ExPASy Swiss-Prot
Match: GLR36_ARATH (Glutamate receptor 3.6 OS=Arabidopsis thaliana GN=GLR3.6 PE=2 SV=1)

HSP 1 Score: 186.422 bits (472), Expect = 1.464e-46
Identity = 93/146 (63.70%), Postives = 109/146 (74.66%), Query Frame = 3
Query:  279 FSFSTLFFSHKERTVNSLSRXXXXXXXXXXXXXTSSYTASLTSILTVEQLSSPIKDIQSLVASSDPIGYQRGSFAENYLTDELNIDKSRLVPLNTAEEYEKALTDGPKNGGVSAVIDERAYMEVFLSTRCEFSIIGQEFTRIGWGF 716
            FSFSTLFFSH+E T ++L R              SSYTASLTSILTV QLSSPIK I++L  + DPIGY +GSF  +YL  ELNI  SRLVPL + EEY+KAL DGP  GGV+AV+DERAY+E+FLS RCEF I+GQEFT+ GWGF
Sbjct:  619 FSFSTLFFSHRETTTSNLGRIVLIIWLFVVLIINSSYTASLTSILTVHQLSSPIKGIETLQTNHDPIGYPQGSFVRDYLIHELNIHVSRLVPLRSPEEYDKALRDGPGKGGVAAVVDERAYIELFLSNRCEFGIVGQEFTKNGWGF 764          
BLAST of CX295222 vs. ExPASy Swiss-Prot
Match: GLR33_ARATH (Glutamate receptor 3.3 OS=Arabidopsis thaliana GN=GLR3.3 PE=2 SV=1)

HSP 1 Score: 185.267 bits (469), Expect = 3.261e-46
Identity = 91/146 (62.33%), Postives = 110/146 (75.34%), Query Frame = 3
Query:  279 FSFSTLFFSHKERTVNSLSRXXXXXXXXXXXXXTSSYTASLTSILTVEQLSSPIKDIQSLVASSDPIGYQRGSFAENYLTDELNIDKSRLVPLNTAEEYEKALTDGPKNGGVSAVIDERAYMEVFLSTRCEFSIIGQEFTRIGWGF 716
            FSFST+FF+H+E TV++L R              SSYTASLTSILTV+QLSSPIK I+SL    DPIGYQ GSFAE+YL +ELNI +SRLVPL T E Y KAL DGP  GGV+A++DER Y+E+FLS+ C + I+GQEFT+ GWGF
Sbjct:  629 FSFSTMFFAHRENTVSTLGRLVLIIWLFVVLIINSSYTASLTSILTVQQLSSPIKGIESLRERDDPIGYQVGSFAESYLRNELNISESRLVPLGTPEAYAKALKDGPSKGGVAAIVDERPYVELFLSSNCAYRIVGQEFTKSGWGF 774          
BLAST of CX295222 vs. ExPASy Swiss-Prot
Match: GLR31_ARATH (Glutamate receptor 3.1 OS=Arabidopsis thaliana GN=GLR3.1 PE=2 SV=2)

HSP 1 Score: 169.474 bits (428), Expect = 1.852e-41
Identity = 86/146 (58.90%), Postives = 110/146 (75.34%), Query Frame = 3
Query:  279 FSFSTLFFSHKERTVNSLSRXXXXXXXXXXXXXTSSYTASLTSILTVEQLSSPIKDIQSLVASSDPIGYQRGSFAENYLTDELNIDKSRLVPLNTAEEYEKALTDGPKNGGVSAVIDERAYMEVFLSTRCEFSIIGQEFTRIGWGF 716
            F+FST+FFSH+E TV++L R             TSSYTASLTSILTV+QL+SPIK + +L++S+  IG+Q GSFAENY+TDELNI  SRLVPL + EEY  AL    +NG V+A++DER Y+++FLS  C+F+I GQEFTR GWGF
Sbjct:  630 FTFSTMFFSHRETTVSTLGRMVLLIWLFVVLIITSSYTASLTSILTVQQLNSPIKGVDTLISSTGRIGFQVGSFAENYMTDELNIASSRLVPLASPEEYANAL----QNGTVAAIVDERPYIDLFLSDYCKFAIRGQEFTRCGWGF 771          
BLAST of CX295222 vs. ExPASy Swiss-Prot
Match: GLR32_ARATH (Glutamate receptor 3.2 OS=Arabidopsis thaliana GN=GLR3.2 PE=1 SV=2)

HSP 1 Score: 164.851 bits (416), Expect = 4.561e-40
Identity = 83/146 (56.85%), Postives = 109/146 (74.66%), Query Frame = 3
Query:  279 FSFSTLFFSHKERTVNSLSRXXXXXXXXXXXXXTSSYTASLTSILTVEQLSSPIKDIQSLVASSDPIGYQRGSFAENYLTDELNIDKSRLVPLNTAEEYEKALTDGPKNGGVSAVIDERAYMEVFLSTRCEFSIIGQEFTRIGWGF 716
            FSFST+FFSH+E TV++L R             TSSYTASLTSILTV+QL+SPI+ + +L++SS  +G+Q GS+AENY+ DELNI +SRLVPL + +EY  AL    +NG V+A++DER Y+++FLS  C F+I GQEFTR GWGF
Sbjct:  630 FSFSTMFFSHRENTVSTLGRAVLLIWLFVVLIITSSYTASLTSILTVQQLNSPIRGVDTLISSSGRVGFQVGSYAENYMIDELNIARSRLVPLGSPKEYAAAL----QNGTVAAIVDERPYVDLFLSEFCGFAIRGQEFTRSGWGF 771          
BLAST of CX295222 vs. ExPASy Swiss-Prot
Match: GLR34_ARATH (Glutamate receptor 3.4 OS=Arabidopsis thaliana GN=GLR3.4 PE=2 SV=2)

HSP 1 Score: 160.614 bits (405), Expect = 8.602e-39
Identity = 83/147 (56.46%), Postives = 103/147 (70.07%), Query Frame = 3
Query:  279 FSFSTLFFSHKERTVNSLSRXXXXXXXXXXXXXTSSYTASLTSILTVEQLSSPIKDIQSLVASSDPIGYQRGSFAENYLTDELNIDKSRLVPLNTAEEYEKALTDGPKNGGVSAVIDERAYMEVFL-STRCEFSIIGQEFTRIGWGF 716
            FSFST+FFSH+E TV+SL R              SSYTASLTSILT+ QL+S I+ I SLV S++PIG Q G+FA NYL +ELNI  SR+VPL   E+Y  AL  GP  GGV+A++DE  Y+EV L ++ C+F  +GQEFTR GWGF
Sbjct:  656 FSFSTMFFSHRENTVSSLGRFVLIIWLFVVLIINSSYTASLTSILTIRQLTSRIEGIDSLVTSNEPIGVQDGTFARNYLINELNILPSRIVPLKDEEQYLSALQRGPNAGGVAAIVDELPYIEVLLTNSNCKFRTVGQEFTRTGWGF 802          
BLAST of CX295222 vs. ExPASy Swiss-Prot
Match: GLR31_ORYSJ (Glutamate receptor 3.1 OS=Oryza sativa subsp. japonica GN=GLR3.1 PE=1 SV=1)

HSP 1 Score: 160.229 bits (404), Expect = 1.124e-38
Identity = 81/146 (55.48%), Postives = 102/146 (69.86%), Query Frame = 3
Query:  279 FSFSTLFFSHKERTVNSLSRXXXXXXXXXXXXXTSSYTASLTSILTVEQLSSPIKDIQSLVASSDPIGYQRGSFAENYLTDELNIDKSRLVPLNTAEEYEKALTDGPKNGGVSAVIDERAYMEVFLSTRCEFSIIGQEFTRIGWGF 716
            FSFSTLFF+H+E T ++L R              SSYTASLTSILTV+QL+SPI  I SL+ S  PIG+Q GSFAENYL  EL +  SRL  L + EEY+KAL  GP  GGV+A++DER Y+E+FL    +F+++G EFT+ GWGF
Sbjct:  631 FSFSTLFFAHREDTRSTLGRFVIIIWLFVVLIIQSSYTASLTSILTVQQLTSPITGIDSLITSDVPIGFQVGSFAENYLAQELGVAHSRLKALGSPEEYKKALDLGPSKGGVAAIVDERPYIELFLYQNPKFAVVGSEFTKSGWGF 776          
BLAST of CX295222 vs. ExPASy Swiss-Prot
Match: GLR35_ARATH (Glutamate receptor 3.5 OS=Arabidopsis thaliana GN=GLR3.5 PE=2 SV=2)

HSP 1 Score: 155.992 bits (393), Expect = 2.119e-37
Identity = 78/147 (53.06%), Postives = 104/147 (70.75%), Query Frame = 3
Query:  279 FSFSTLFFSHKERTVNSLSRXXXXXXXXXXXXXTSSYTASLTSILTVEQLSSPIKDIQSLVASSDPIGYQRGSFAENYLTDELNIDKSRLVPLNTAEEYEKALTDGPKNGGVSAVIDERAYMEVFLS-TRCEFSIIGQEFTRIGWGF 716
            FSFST+FFSH+E TV++L R              SSYTASLTSILTV+QL+S I+ + +L+AS++PIG Q G+FA  +L +ELNI  SR++PL   EEY  AL  GP+ GGV+A++DE  Y++  LS + C+F  +GQEFTR GWGF
Sbjct:  649 FSFSTMFFSHRENTVSTLGRFVLLVWLFVVLIINSSYTASLTSILTVQQLTSRIEGMDTLIASNEPIGVQDGTFAWKFLVNELNIAPSRIIPLKDEEEYLSALQRGPRGGGVAAIVDELPYIKALLSNSNCKFRTVGQEFTRTGWGF 795          
BLAST of CX295222 vs. ExPASy Swiss-Prot
Match: GLR37_ARATH (Glutamate receptor 3.7 OS=Arabidopsis thaliana GN=GLR3.7 PE=2 SV=2)

HSP 1 Score: 144.436 bits (363), Expect = 6.380e-34
Identity = 78/147 (53.06%), Postives = 100/147 (68.03%), Query Frame = 3
Query:  279 FSFSTLFFSHKERTVNSLSRXXXXXXXXXXXXXTSSYTASLTSILTVEQLSSPIKDIQSLVASSDPIGYQRGSFAENYLTDELNIDKSRLVPLNTAEEYEKALTDGPKN-GGVSAVIDERAYMEVFLSTRCEFSIIGQEFTRIGWGF 716
            FSFSTLF  ++E T+++L+R             T+SYTA+LTSILTV+QL S I  I SL AS  PIGYQ G+F   YLT  L + +SRLVPL++ EEYEKAL  GP N GGV+A++DE  Y+E+FL+ R  F I+G+ F   GWGF
Sbjct:  621 FSFSTLFKRNQEDTISNLARLVMIVWLFLLMVLTASYTANLTSILTVQQLPSAITGIDSLRASEVPIGYQAGTFTLEYLTYSLGMARSRLVPLDSTEEYEKALKLGPTNWGGVAAIVDELPYIELFLAERTGFKIVGEPFMHRGWGF 767          
BLAST of CX295222 vs. ExPASy Swiss-Prot
Match: GLR23_ARATH (Glutamate receptor 2.3 OS=Arabidopsis thaliana GN=GLR2.3 PE=2 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 5.243e-20
Identity = 57/151 (37.75%), Postives = 84/151 (55.63%), Query Frame = 3
Query:  270 LCRFSFSTLFFSHKERTVNSLSRXXXXXXXXXXXXXTSSYTASLTSILTVEQLSSPIKDIQSLVASSDPIGYQRGSFAENYLTDELNIDKSRLVPLNTAEEYEKALTDGPKNGGVSAVIDERAYMEVFLSTRCE-FSIIGQEFTRIGWGFV 719
            +C F+FST+ F+ +ER  +  +R             T SYTASL S+LT ++L+  I  + SL+   + +GYQR SF    L  E    +S LVP +TAEE ++ L+ GPK GGVS    E  Y+ +FL   C  + ++ + F   G+GFV
Sbjct:  620 ICWFAFSTMVFAPRERVFSFWARALVIAWYFLVLVLTQSYTASLASLLTSQKLNPTITSMSSLLEKGETVGYQRTSFILGKL-KERGFPQSSLVPFDTAEECDELLSKGPKKGGVSGAFLEIPYLRLFLGQFCNTYKMVEEPFNVDGFGFV 769          
BLAST of CX295222 vs. ExPASy Swiss-Prot
Match: GLR25_ARATH (Glutamate receptor 2.5 OS=Arabidopsis thaliana GN=GLR2.5 PE=1 SV=2)

HSP 1 Score: 97.8265 bits (242), Expect = 6.848e-20
Identity = 57/147 (38.78%), Postives = 82/147 (55.78%), Query Frame = 3
Query:  279 FSFSTLFFSHKERTVNSLSRXXXXXXXXXXXXXTSSYTASLTSILTVEQLSSPIKDIQSLVASSDPIGYQRGSFAENYLTDELNIDKSRLVPLNTAEEYEKALTDGPKNGGVSAVIDERAYMEVFLSTRC-EFSIIGQEFTRIGWGF 716
            FSFSTLFF+H+  + +  +R             T SYTA+LTS+LTV++L   ++ +  L  S   IGYQ GSF    L  ++  D+SRL   N+ EE  +       NGG+ A  DE AY+++F++  C E+SII   F   G+GF
Sbjct:  628 FSFSTLFFAHRRPSESFFTRVLVVVWCFVLLILTQSYTATLTSMLTVQELRPTVRHMDDLRKSGVNIGYQTGSFTFERL-KQMRFDESRLKTYNSPEEMRELFLHKSSNGGIDAAFDEVAYIKLFMAKYCSEYSIIEPTFKADGFGF 773          
The following BLAST results are available for this feature:
BLAST of CX295222 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 20
Match NameE-valueIdentityDescription
GLR36_ARATH1.464e-4663.70Glutamate receptor 3.6 OS=Arabidopsis thaliana GN=... [more]
GLR33_ARATH3.261e-4662.33Glutamate receptor 3.3 OS=Arabidopsis thaliana GN=... [more]
GLR31_ARATH1.852e-4158.90Glutamate receptor 3.1 OS=Arabidopsis thaliana GN=... [more]
GLR32_ARATH4.561e-4056.85Glutamate receptor 3.2 OS=Arabidopsis thaliana GN=... [more]
GLR34_ARATH8.602e-3956.46Glutamate receptor 3.4 OS=Arabidopsis thaliana GN=... [more]
GLR31_ORYSJ1.124e-3855.48Glutamate receptor 3.1 OS=Oryza sativa subsp. japo... [more]
GLR35_ARATH2.119e-3753.06Glutamate receptor 3.5 OS=Arabidopsis thaliana GN=... [more]
GLR37_ARATH6.380e-3453.06Glutamate receptor 3.7 OS=Arabidopsis thaliana GN=... [more]
GLR23_ARATH5.243e-2037.75Glutamate receptor 2.3 OS=Arabidopsis thaliana GN=... [more]
GLR25_ARATH6.848e-2038.78Glutamate receptor 2.5 OS=Arabidopsis thaliana GN=... [more]

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Properties
Property NameValue
Genbank descriptionC05069H12SK PhIFruit1 Citrus clementina cDNA clone C05069H12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX295222 ID=CX295222; Name=CX295222; organism=Citrus clementina; type=EST; length=773bp
GAGGACCAAGGCTACTTAGTTTAAAGTTCTTTTACTCCATATATGTGAAA
AGGGTCATGTAGTTTTTTTTTTTTTTAATTTATTTATTATGTTTTGTTAG
TTTCGGCACCAGATTTTGTCTAAAGGAATGCATCAAGAGGATATATATTG
GTTATAGTTTTTTTTTTTTTAAAAAAAAAAAAAAGAATGAGTAAATTTAT
ACGTCGTTTGGTTAGCTGTTAATTCTGCATCTTCTTCTAAATCCTCTAAT
AACTAAGATTCGTGCCTTACTCTGCAGGTTTAGCTTTTCAACTTTGTTCT
TTTCACATAAAGAAAGAACCGTTAACTCCCTCAGTCGCCTTGTGCTGATC
ATATGGCTATTCGTTGTTTTAATACTTACTTCAAGCTACACTGCAAGTCT
GACCTCAATCCTCACAGTTGAACAGCTTTCTTCGCCGATTAAAGATATCC
AGAGTTTAGTAGCAAGCAGTGACCCTATAGGCTACCAGCGTGGCTCATTT
GCAGAAAATTATTTAACTGATGAACTCAACATAGATAAGTCCAGACTTGT
TCCTCTTAATACAGCAGAAGAATATGAGAAAGCCTTAACTGATGGTCCCA
AAAACGGTGGTGTTTCAGCAGTAATCGATGAACGTGCGTACATGGAGGTC
TTCCTCTCTACACGTTGTGAATTCAGCATCATAGGCCAAGAATTTACCAG
AATTGGGTGGGGATTTGTGAGTATTGCTCTGTCACTCTGGTAGAATGATA
TACAGGCAAACTTATCTCTTCTG
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