CX295239

Overview
NameCX295239
Unique NameCX295239
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length471
Libraries
Library NameType
PhIFruit1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10305 contig Ccv1_Contig10305:194..663. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX295239 vs. ExPASy Swiss-Prot
Match: SAR1A_ARATH (GTP-binding protein SAR1A OS=Arabidopsis thaliana GN=SAR1A PE=2 SV=1)

HSP 1 Score: 218.394 bits (555), Expect = 1.240e-56
Identity = 111/143 (77.62%), Postives = 118/143 (82.52%), Query Frame = 3
Query:   39 RKRPRSCF*GLDNAGKTTLLHMLKDERLVQHQPTQYPTSEELSIGKIKFKAFDLGGHQIARRVWXXXXXXXXXXXXXXXXXXXERFAESKKELDALLSDEALPNVPFLVLGNKIDIPYAASEEELRYHLGLSNFTTGKGKVNL 467
            +K  +  F GLDNAGKTTLLHMLKDERLVQHQPTQ+PTSEELSIGKIKFKAFDLGGHQIARRVW                   ERFAESKKELDALLSDE+L +VPFL+LGNKIDIPYAASE+ELRYHLGLSNFTTGKGKVNL
Sbjct:   18 QKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFKAFDLGGHQIARRVWKDYYAKVDAVVYLVDAYDKERFAESKKELDALLSDESLASVPFLILGNKIDIPYAASEDELRYHLGLSNFTTGKGKVNL 160          
BLAST of CX295239 vs. ExPASy Swiss-Prot
Match: SAR1A_BRACM (GTP-binding protein SAR1A OS=Brassica campestris GN=SAR1A PE=2 SV=1)

HSP 1 Score: 216.083 bits (549), Expect = 6.155e-56
Identity = 110/143 (76.92%), Postives = 117/143 (81.82%), Query Frame = 3
Query:   39 RKRPRSCF*GLDNAGKTTLLHMLKDERLVQHQPTQYPTSEELSIGKIKFKAFDLGGHQIARRVWXXXXXXXXXXXXXXXXXXXERFAESKKELDALLSDEALPNVPFLVLGNKIDIPYAASEEELRYHLGLSNFTTGKGKVNL 467
            +K  +  F GLDNAGKTTLLHMLKDERLVQHQPTQ+PTSEELSIGKIKFKAFDLGGHQIARRVW                   ERFAESKKELDALLSDE+L  VPFL+LGNKIDIPYAASE+ELRYHLGLSNFTTGKGKV+L
Sbjct:   18 QKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFKAFDLGGHQIARRVWKDYYAKVDAVVYLVDAYDKERFAESKKELDALLSDESLATVPFLILGNKIDIPYAASEDELRYHLGLSNFTTGKGKVDL 160          
BLAST of CX295239 vs. ExPASy Swiss-Prot
Match: SAR1B_ARATH (GTP-binding protein SAR1B OS=Arabidopsis thaliana GN=SAR1B PE=2 SV=1)

HSP 1 Score: 214.542 bits (545), Expect = 1.791e-55
Identity = 109/143 (76.22%), Postives = 116/143 (81.12%), Query Frame = 3
Query:   39 RKRPRSCF*GLDNAGKTTLLHMLKDERLVQHQPTQYPTSEELSIGKIKFKAFDLGGHQIARRVWXXXXXXXXXXXXXXXXXXXERFAESKKELDALLSDEALPNVPFLVLGNKIDIPYAASEEELRYHLGLSNFTTGKGKVNL 467
            +K  +  F GLDNAGKTTLLHMLKDERLVQHQPTQ+PTSEELSIGKIKFKAFDLGGHQIARRVW                   ERFAESK+ELDALLSDEAL  VPFL+LGNKIDIPYAASE+ELRYHLGL+NFTTGKGKV L
Sbjct:   18 QKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFKAFDLGGHQIARRVWKDYYAKVDAVVYLVDAYDKERFAESKRELDALLSDEALATVPFLILGNKIDIPYAASEDELRYHLGLTNFTTGKGKVTL 160          
BLAST of CX295239 vs. ExPASy Swiss-Prot
Match: SAR1B_BRACM (GTP-binding protein SAR1B OS=Brassica campestris GN=SAR1B PE=2 SV=1)

HSP 1 Score: 210.305 bits (534), Expect = 3.377e-54
Identity = 107/144 (74.31%), Postives = 115/144 (79.86%), Query Frame = 3
Query:   39 RKRPRSCF*GLDNAGKTTLLHMLKDERLVQHQPTQYPTSEELSIGKIKFKAFDLGGHQIARRVWXXXXXXXXXXXXXXXXXXXERFAESKKELDALLSDEALPNVPFLVLGNKIDIPYAASEEELRYHLGLSNFTTGKGKVNLA 470
            +K  +  F GLDNAGKTTLLHMLKDERLVQHQPTQ+PTSEELSIGKIKFKAFDLGGHQIARRVW                   ERF+ESKKELDALLSD+AL  VPFL+LGNKID PYAASE+ELRYHLGL+NFTTGKGKV  A
Sbjct:   18 QKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFKAFDLGGHQIARRVWKDYYAKVDAVVYLVDAYDKERFSESKKELDALLSDDALATVPFLILGNKIDNPYAASEDELRYHLGLTNFTTGKGKVTTA 161          
BLAST of CX295239 vs. ExPASy Swiss-Prot
Match: SAR2_SOLLC (GTP-binding protein SAR2 OS=Solanum lycopersicum GN=SAR2 PE=2 SV=1)

HSP 1 Score: 207.994 bits (528), Expect = 1.676e-53
Identity = 105/144 (72.92%), Postives = 113/144 (78.47%), Query Frame = 3
Query:   39 RKRPRSCF*GLDNAGKTTLLHMLKDERLVQHQPTQYPTSEELSIGKIKFKAFDLGGHQIARRVWXXXXXXXXXXXXXXXXXXXERFAESKKELDALLSDEALPNVPFLVLGNKIDIPYAASEEELRYHLGLSNFTTGKGKVNLA 470
            +K  +  F GLDNAGKTTLLHMLKDERLVQHQPTQYPTSEELSIG IKFKAFDLGGHQIARRVW                   ERF E+KKELD LLSDE+L NVPFL+LGNKIDIPYAASE+ELRYHLGL+  TTGKG +NLA
Sbjct:   18 QKDAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQYPTSEELSIGNIKFKAFDLGGHQIARRVWRDYYAKVDAVVYLVDANDRERFPEAKKELDGLLSDESLTNVPFLILGNKIDIPYAASEDELRYHLGLTGVTTGKGNINLA 161          
BLAST of CX295239 vs. ExPASy Swiss-Prot
Match: SAR1_USTMA (Small COPII coat GTPase SAR1 OS=Ustilago maydis GN=SAR1 PE=3 SV=1)

HSP 1 Score: 154.836 bits (390), Expect = 2.498e-41
Identity = 84/142 (59.15%), Postives = 98/142 (69.01%), Query Frame = 3
Query:   42 KRPRSCF*GLDNAGKTTLLHMLKDERLVQHQPTQYPTSEELSIGKIKFKAFDLGGHQIARRVWXXXXXXXXXXXXXXXXXXXERFAESKKELDALLSDEALPNVPFLVLGNKIDIPYAASEEELRYHLGLSNFTTGKGKVNL 467
            K  +  F GLDNAGKTTLLHMLK++RL   QPT +PTSEEL+IG++KF  +DLGGHQ ARR+W                   ERFAE++ ELDALLS E L +VPFL+LGNKID P A SEEELR  +GL   TTGKGKV L
Sbjct:   19 KNAKILFLGLDNAGKTTLLHMLKNDRLATLQPTLHPTSEELAIGQVKFTTYDLGGHQQARRLWKDYFPEVDGIVFLVDTQDHERFAEARAELDALLSIEELSSVPFLILGNKIDAPGAVSEEELRQAIGLYQ-TTGKGKVPL 159          

HSP 2 Score: 34.6538 bits (78), Expect = 2.498e-41
Identity = 15/22 (68.18%), Postives = 17/22 (77.27%), Query Frame = 2
Query:    2 WFYGVLASLGLWQKEAKILFLG 67
            WF+ +LA LGL  K AKILFLG
Sbjct:    6 WFWDILAQLGLAHKNAKILFLG 27          
BLAST of CX295239 vs. ExPASy Swiss-Prot
Match: SAR1_NEOFI (Small COPII coat GTPase sar1 OS=Neosartorya fischeri (strain ATCC 1020 / DSM 3700 / FGSC A1164 / NRRL 181) GN=sar1 PE=3 SV=1)

HSP 1 Score: 150.984 bits (380), Expect = 3.256e-41
Identity = 83/142 (58.45%), Postives = 95/142 (66.90%), Query Frame = 3
Query:   42 KRPRSCF*GLDNAGKTTLLHMLKDERLVQHQPTQYPTSEELSIGKIKFKAFDLGGHQIARRVWXXXXXXXXXXXXXXXXXXXERFAESKKELDALLSDEALPNVPFLVLGNKIDIPYAASEEELRYHLGLSNFTTGKGKVNL 467
            K  +  F GLDNAGKTTLLHMLK++R+   QPT +PTSEEL+IG  +F  FDLGGHQ ARR+W                   ERF ESK ELDALL+ E L  VPFL+LGNKID P A SE+ELR+ LGL   TTGKGKV L
Sbjct:   19 KHAKLLFLGLDNAGKTTLLHMLKNDRVATLQPTAHPTSEELAIGNNRFTTFDLGGHQQARRLWKDYFPEVSGIVFLVDAKDHERFPESKAELDALLAMEELAKVPFLILGNKIDHPDAVSEDELRHQLGLYQ-TTGKGKVPL 159          

HSP 2 Score: 38.1206 bits (87), Expect = 3.256e-41
Identity = 17/22 (77.27%), Postives = 18/22 (81.82%), Query Frame = 2
Query:    2 WFYGVLASLGLWQKEAKILFLG 67
            WFY VLASLGL  K AK+LFLG
Sbjct:    6 WFYDVLASLGLLNKHAKLLFLG 27          
BLAST of CX295239 vs. ExPASy Swiss-Prot
Match: SAR1_ASPCL (Small COPII coat GTPase sar1 OS=Aspergillus clavatus GN=sar1 PE=3 SV=1)

HSP 1 Score: 150.984 bits (380), Expect = 3.256e-41
Identity = 83/142 (58.45%), Postives = 95/142 (66.90%), Query Frame = 3
Query:   42 KRPRSCF*GLDNAGKTTLLHMLKDERLVQHQPTQYPTSEELSIGKIKFKAFDLGGHQIARRVWXXXXXXXXXXXXXXXXXXXERFAESKKELDALLSDEALPNVPFLVLGNKIDIPYAASEEELRYHLGLSNFTTGKGKVNL 467
            K  +  F GLDNAGKTTLLHMLK++R+   QPT +PTSEEL+IG  +F  FDLGGHQ ARR+W                   ERF ESK ELDALL+ E L  VPFL+LGNKID P A SE+ELR+ LGL   TTGKGKV L
Sbjct:   19 KHAKLLFLGLDNAGKTTLLHMLKNDRVATLQPTAHPTSEELAIGNNRFTTFDLGGHQQARRLWKDYFPEVSGIVFLVDAKDHERFPESKAELDALLAMEELSKVPFLILGNKIDHPDAVSEDELRHQLGLYQ-TTGKGKVPL 159          

HSP 2 Score: 38.1206 bits (87), Expect = 3.256e-41
Identity = 17/22 (77.27%), Postives = 18/22 (81.82%), Query Frame = 2
Query:    2 WFYGVLASLGLWQKEAKILFLG 67
            WFY VLASLGL  K AK+LFLG
Sbjct:    6 WFYDVLASLGLLNKHAKLLFLG 27          
BLAST of CX295239 vs. ExPASy Swiss-Prot
Match: SAR1_TRIRE (Small COPII coat GTPase sar1 OS=Trichoderma reesei GN=sar1 PE=3 SV=1)

HSP 1 Score: 151.754 bits (382), Expect = 4.242e-41
Identity = 81/142 (57.04%), Postives = 96/142 (67.61%), Query Frame = 3
Query:   42 KRPRSCF*GLDNAGKTTLLHMLKDERLVQHQPTQYPTSEELSIGKIKFKAFDLGGHQIARRVWXXXXXXXXXXXXXXXXXXXERFAESKKELDALLSDEALPNVPFLVLGNKIDIPYAASEEELRYHLGLSNFTTGKGKVNL 467
            K  +  F GLDNAGKTTLLHMLK++R+   QPT +PTSEEL+IG ++F  FDLGGHQ ARR+W                   ERF E+K ELDALLS E L  VPF++LGNKID P A SE+ELR+ LGL   TTGKG+V L
Sbjct:   19 KHAKLLFLGLDNAGKTTLLHMLKNDRVAILQPTLHPTSEELAIGNVRFNTFDLGGHQQARRIWRDYFPDVNGVVFLVDAKDHERFPEAKAELDALLSMEELSKVPFVILGNKIDHPDAVSEDELRHQLGLYQ-TTGKGRVQL 159          

HSP 2 Score: 36.965 bits (84), Expect = 4.242e-41
Identity = 16/22 (72.73%), Postives = 18/22 (81.82%), Query Frame = 2
Query:    2 WFYGVLASLGLWQKEAKILFLG 67
            WFY VL+SLGL  K AK+LFLG
Sbjct:    6 WFYDVLSSLGLLNKHAKLLFLG 27          
BLAST of CX295239 vs. ExPASy Swiss-Prot
Match: SAR1_CHAGB (Small COPII coat GTPase SAR1 OS=Chaetomium globosum GN=SAR1 PE=3 SV=2)

HSP 1 Score: 151.754 bits (382), Expect = 4.242e-41
Identity = 83/142 (58.45%), Postives = 96/142 (67.61%), Query Frame = 3
Query:   42 KRPRSCF*GLDNAGKTTLLHMLKDERLVQHQPTQYPTSEELSIGKIKFKAFDLGGHQIARRVWXXXXXXXXXXXXXXXXXXXERFAESKKELDALLSDEALPNVPFLVLGNKIDIPYAASEEELRYHLGLSNFTTGKGKVNL 467
            K  +  F GLDNAGKTTLLHMLK++R+   QPT +PTSEELSIG ++F  FDLGGHQ ARR+W                   ERF E+K ELDALLS E L  VPF+VLGNKID P A SE+ELR+ LG+   TTGKGKV L
Sbjct:   19 KHAKLLFLGLDNAGKTTLLHMLKNDRVAILQPTLHPTSEELSIGNVRFTTFDLGGHQQARRLWKDYFPEVNGVVFLVDAKDHERFPEAKAELDALLSMEELSKVPFVVLGNKIDHPDAVSEDELRHQLGMYQ-TTGKGKVPL 159          

HSP 2 Score: 36.965 bits (84), Expect = 4.242e-41
Identity = 16/22 (72.73%), Postives = 18/22 (81.82%), Query Frame = 2
Query:    2 WFYGVLASLGLWQKEAKILFLG 67
            WFY VL+SLGL  K AK+LFLG
Sbjct:    6 WFYDVLSSLGLLNKHAKLLFLG 27          
The following BLAST results are available for this feature:
BLAST of CX295239 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 112
Match NameE-valueIdentityDescription
SAR1A_ARATH1.240e-5677.62GTP-binding protein SAR1A OS=Arabidopsis thaliana ... [more]
SAR1A_BRACM6.155e-5676.92GTP-binding protein SAR1A OS=Brassica campestris G... [more]
SAR1B_ARATH1.791e-5576.22GTP-binding protein SAR1B OS=Arabidopsis thaliana ... [more]
SAR1B_BRACM3.377e-5474.31GTP-binding protein SAR1B OS=Brassica campestris G... [more]
SAR2_SOLLC1.676e-5372.92GTP-binding protein SAR2 OS=Solanum lycopersicum G... [more]
SAR1_USTMA2.498e-4159.15Small COPII coat GTPase SAR1 OS=Ustilago maydis GN... [more]
SAR1_NEOFI3.256e-4158.45Small COPII coat GTPase sar1 OS=Neosartorya fische... [more]
SAR1_ASPCL3.256e-4158.45Small COPII coat GTPase sar1 OS=Aspergillus clavat... [more]
SAR1_TRIRE4.242e-4157.04Small COPII coat GTPase sar1 OS=Trichoderma reesei... [more]
SAR1_CHAGB4.242e-4158.45Small COPII coat GTPase SAR1 OS=Chaetomium globosu... [more]

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Properties
Property NameValue
Genbank descriptionC05070B05SK PhIFruit1 Citrus clementina cDNA clone C05070B05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX295239 ID=CX295239; Name=CX295239; organism=Citrus clementina; type=EST; length=471bp
CTGGTTCTACGGCGTGCTGGCCTCCCTCGGTCTTTGGCAGAAAGAGGCCA
AGATCTTGTTTTTAGGGGCTTGATAATGCTGGAAAAACAACGTTGCTTCA
CATGTTGAAAGATGAGAGATTGGTTCAACATCAGCCAACACAGTATCCCA
CATCGGAAGAGCTTAGTATTGGGAAAATTAAGTTCAAGGCGTTTGATTTG
GGAGGCCATCAGATTGCTAGGAGAGTCTGGAAGGATTACTATGCGAAGGT
TGATGCTGTGGTATACCTAGTGGATGCCTATGACAAAGAGAGGTTTGCAG
AATCAAAGAAAGAACTGGATGCACTCCTTTCTGATGAGGCATTGCCCAAT
GTTCCTTTTCTTGTGTTAGGAAACAAGATTGACATCCCTTATGCTGCTTC
TGAGGAAGAGTTGCGTTACCACCTTGGCCTATCTAATTTCACCACTGGGA
AGGGGAAGGTTAATCTAGCGG
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