CX295244

Overview
NameCX295244
Unique NameCX295244
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length739
Libraries
Library NameType
PhIFruit1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig4683 contig Ccv1_Contig4683:1210..1948. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of CX295244 vs. ExPASy Swiss-Prot
Match: KING1_ARATH (SNF1-related protein kinase regulatory subunit gamma 1 OS=Arabidopsis thaliana GN=KING1 PE=1 SV=2)

HSP 1 Score: 156.762 bits (395), Expect = 1.160e-37
Identity = 82/217 (37.79%), Postives = 128/217 (58.99%), Query Frame = 2 
Query:   11 DGSMLIVLLLLSKYRLRNVPIIEPGTPDIENYITQSAVVQGLEGCKGRDWFDIIASQPISDLGLPFMSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLKPELFSNFRQLTVRDFMNAVVPTTPDSGKVIPP-----ITCKLESTLGSVIHSLASKSVHRIYXXXXXXXXXXXXITLRDVISCFIFEPPNHLDNYF 646
            + S L +LLLLSKY+++++P+++ G   IEN ITQS V+  L  C G  WF+    + +S++GLP MS D +I I  +E +L+AFK M+   IGGIPV+E   +K VGN+S+RD++ LL  PE++ ++R +T ++F+ +V       G    P     I C    TL  +I  L ++ +HRIY            ITLRD+I+  + EP  +  ++F
Sbjct:  197 ENSFLTMLLLLSKYKMKSIPVVDLGVAKIENIITQSGVIHMLAECAGLLWFEDWGIKTLSEVGLPIMSKDHIIKIYEDEPVLQAFKLMRRKRIGGIPVIERNSEKPVGNISLRDVQFLLTAPEIYHDYRSITTKNFLVSVREHLEKCGDTSAPIMSGVIACTKNHTLKELILMLDAEKIHRIY-VVDDFGNLEGLITLRDIIARLVHEPSGYFGDFF 412
The following BLAST results are available for this feature:
BLAST of CX295244 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
KING1_ARATH1.160e-3737.79SNF1-related protein kinase regulatory subunit gam... [more]
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Properties
Property NameValue
Genbank descriptionC05070B10SK PhIFruit1 Citrus clementina cDNA clone C05070B10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX295244 ID=CX295244; Name=CX295244; organism=Citrus clementina; type=EST; length=739bp
CAGTTGCACAGATGGTTCTATGCTGATCGTCTTACTGCTGCTCTCAAAAT
ATAGGTTGAGAAATGTACCTATCATTGAACCAGGCACGCCTGATATTGAG
AACTACATTACTCAATCAGCAGTTGTTCAGGGTCTGGAAGGATGCAAAGG
AAGGGACTGGTTTGACATTATTGCTTCACAACCTATTTCTGATCTAGGGC
TTCCGTTCATGTCTTCTGATGAGGTTATTACCATACAGAGCAATGAACTG
ATTCTGGAAGCTTTCAAACGGATGAAAGATAACAATATTGGTGGCATTCC
AGTCGTAGAGGGACAACAAAAGAAAATTGTGGGAAATGTAAGCATAAGAG
ATATCAGACACTTGCTGCTCAAACCAGAACTCTTCTCCAATTTCAGGCAG
CTTACAGTCAGAGATTTCATGAATGCTGTGGTACCAACCACCCCAGATTC
TGGGAAAGTCATCCCACCAATAACATGCAAGCTGGAGTCAACTCTCGGCA
GTGTGATCCACAGTCTTGCTTCCAAGTCTGTTCACAGAATCTATGTGGTA
GCTGGCGAGGAAGCTGAAGTTGTTGGTGTAATTACACTCAGAGATGTAAT
CTCTTGCTTCATCTTCGAACCACCTAACCATTTGGACAACTACTTTGGGT
TTTCGGTCAAAGATCTGTTGAACCAGTGAGATTTTTGTTATAGAAGATCT
CTGATAGCTTGAAATAACTCGCGGTGTAATCAATTTGGC
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