CX295247

Overview
NameCX295247
Unique NameCX295247
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length724
Libraries
Library NameType
PhIFruit1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX295247 vs. ExPASy Swiss-Prot
Match: VATC_ARATH (V-type proton ATPase subunit C OS=Arabidopsis thaliana GN=VHA-C PE=1 SV=1)

HSP 1 Score: 412.92 bits (1060), Expect = 8.637e-115
Identity = 203/238 (85.29%), Postives = 218/238 (91.60%), Query Frame = 1
Query:   10 SKYPTMSPLREIVDGIHTLVAKIEDDLKVRVAEYNNVRSQLNAINRKQSGSLAVRDLSNLVKPEDIITSEHLVTLLAVVPKYSQKDWLASYETLTSYVVPRSSKLLYEDNEYALYTVTLFGRVADNFRIAAREKGFQIRDFEYSSEAQESRNQELEKLVHDQESLRSSLLQWCYTSYGEVFSSWMHFCAVRVFAESILRYGLPPSFLACVLAPSVKGEKKVRSILEELCGNANSTFWK 723
            +KYPTMSPL+E+VD I + VAKIEDDLKVRVAEYNN+R QLNAINRKQSGSLAVRDLSNLVKPEDI+ SEHLVTLLAVVPKYSQKDWLA YETLT YVVPRSSK L+EDNEYALYTVTLF RVADNFRIAAREKGFQ+RDFE S EAQE+R QEL KLV DQESLRSSLLQWCYTSYGEVFSSWMHFCAVR FAESI+RYGLPP+FLACVL+P+VK EKKVRSILE LC + NS +WK
Sbjct:  110 AKYPTMSPLKEVVDNIQSQVAKIEDDLKVRVAEYNNIRGQLNAINRKQSGSLAVRDLSNLVKPEDIVESEHLVTLLAVVPKYSQKDWLACYETLTDYVVPRSSKKLFEDNEYALYTVTLFTRVADNFRIAAREKGFQVRDFEQSVEAQETRKQELAKLVQDQESLRSSLLQWCYTSYGEVFSSWMHFCAVRTFAESIMRYGLPPAFLACVLSPAVKSEKKVRSILERLCDSTNSLYWK 347          
BLAST of CX295247 vs. ExPASy Swiss-Prot
Match: VATC_HORVU (V-type proton ATPase subunit C OS=Hordeum vulgare GN=VATC PE=1 SV=1)

HSP 1 Score: 285.804 bits (730), Expect = 1.592e-76
Identity = 151/226 (66.81%), Postives = 177/226 (78.32%), Query Frame = 1
Query:   13 KYPTMSPLREIVDGIHTLVAKIEDDLKVRVAEYNNVRSQLNAINRKQSGSLAVRDLSNLVKPEDIITSEHLVTLLAVVPKYSQKDWLASYETLTSYVVPRSSKLLYEDNEYALYTVTLFGRVADNFRIAAREKGFQIRDFEYSSEAQESRNQELEKLVHDQESLRSS-LLQWCYTSYGEVFSSWMHF-CAVRVFAESILRYGLPPSFLACVLAPSVKGEKKVRSIL 684
            KYP  +PL+E V  I + VAKIEDD+KVRVAEY NV+SQL AINRKQ+GSLAVRDLSNL+KPED++TSEHLVTLL++VPKYSQKDWLASYE+L ++VVPRSSK LYEDNEYALYTVTLF +V DNF++ AREKGFQIRDFEYS EAQESR QELEKL+ DQE +R+S +      +   VFSSW  F  AVRVF ESILRYG   +   C  +   K  +K +  L
Sbjct:  116 KYPVNAPLKETVASIQSQVAKIEDDMKVRVAEYGNVKSQLGAINRKQTGSLAVRDLSNLIKPEDMVTSEHLVTLLSIVPKYSQKDWLASYESLDTFVVPRSSKKLYEDNEYALYTVTLFAKVVDNFKVHAREKGFQIRDFEYSPEAQESRKQELEKLLQDQEVMRTSPIAMGAMLATVRVFSSWDAFSSAVRVFVESILRYGSACTVPVCCPSTIYKEREKSKEHL 341          
BLAST of CX295247 vs. ExPASy Swiss-Prot
Match: VTC1A_DANRE (V-type proton ATPase subunit C 1-A OS=Danio rerio GN=atp6v1c1a PE=2 SV=1)

HSP 1 Score: 206.068 bits (523), Expect = 1.604e-52
Identity = 101/236 (42.80%), Postives = 157/236 (66.53%), Query Frame = 1
Query:   10 SKYPTMSPLREIVDGIHTLVAKIEDDLKVRVAEYNNVRSQLNAINRKQSGSLAVRDLSNLVKPED-IITSEHLVTLLAVVPKYSQKDWLASYETLTSYVVPRSSKLLYEDNEYALYTVTLFGRVADNFRIAAREKGFQIRDFEYSSEAQESRNQELEKLVHDQESLRSSLLQWCYTSYGEVFSSWMHFCAVRVFAESILRYGLPPSFLACVLAPSVKGEKKVRSILEELCGNANST 714
            +KYP    L+ I + I   V++I++DLK R + YNN++  L  + RK +GSL  R L+++VK +D ++ SE+L+TLL VVPK +  DW  +YETL   VVPRS+ LL+ED++  L+TVTLF +  D+FR  ARE  F +RDF+Y+ E  ++  +E+ +L  D++     L++W   ++ E F +W+H  A+RVF ES+LRYGLP +F A +L P+ K  KK+R +L +L  + +S+
Sbjct:  110 AKYPIKQSLKNISEIISKQVSQIDNDLKARASAYNNLKGNLQNLERKNAGSLLTRSLADIVKKDDFVLDSEYLITLLVVVPKTNYTDWQRTYETLAEMVVPRSTNLLFEDHDSGLFTVTLFRKAIDDFRHKARENKFTVRDFQYNEEEMKADKEEMTRLSTDKKKQFGPLVRWLKVNFSEAFIAWVHIKALRVFVESVLRYGLPVNFQAMLLQPNKKNMKKLREVLYDLYKHLDSS 345          
BLAST of CX295247 vs. ExPASy Swiss-Prot
Match: VATC1_RAT (V-type proton ATPase subunit C 1 OS=Rattus norvegicus GN=Atp6v1c1 PE=2 SV=1)

HSP 1 Score: 200.675 bits (509), Expect = 6.737e-51
Identity = 102/236 (43.22%), Postives = 150/236 (63.56%), Query Frame = 1
Query:   10 SKYPTMSPLREIVDGIHTLVAKIEDDLKVRVAEYNNVRSQLNAINRKQSGSLAVRDLSNLVKPED-IITSEHLVTLLAVVPKYSQKDWLASYETLTSYVVPRSSKLLYEDNEYALYTVTLFGRVADNFRIAAREKGFQIRDFEYSSEAQESRNQELEKLVHDQESLRSSLLQWCYTSYGEVFSSWMHFCAVRVFAESILRYGLPPSFLACVLAPSVKGEKKVRSILEELCGNANST 714
            +KYP    L+ I + I   V +I++DLK R + YNN++  L  + RK +GSL  R L+ +VK +D ++ SE+LVTLL VVPK +  DW+  YETL   VVPRSS +L ED +  L  VTLF +  D+FR  ARE  F +RDF+Y+ E   +  +E+ +L  D++     L++W   ++ E F +W+H  A+RVF ES+LRYGLP +F A +L P+ K  KK+R +L EL  + +S+
Sbjct:  110 AKYPIKQSLKNISEIIAKGVTQIDNDLKSRASAYNNLKGNLQNLERKNAGSLLTRSLAEIVKKDDFVLDSEYLVTLLVVVPKLNHNDWIKQYETLAEMVVPRSSNVLSEDQDSYLCNVTLFKKAVDDFRHKARENKFIVRDFQYNEEEMRADKEEMNRLSTDKKKQFGPLVRWLKVNFSEAFIAWIHIKALRVFVESVLRYGLPVNFQAMLLQPNKKSVKKLREVLHELYKHLDSS 345          
BLAST of CX295247 vs. ExPASy Swiss-Prot
Match: VATC1_MOUSE (V-type proton ATPase subunit C 1 OS=Mus musculus GN=Atp6v1c1 PE=1 SV=4)

HSP 1 Score: 200.675 bits (509), Expect = 6.737e-51
Identity = 102/236 (43.22%), Postives = 151/236 (63.98%), Query Frame = 1
Query:   10 SKYPTMSPLREIVDGIHTLVAKIEDDLKVRVAEYNNVRSQLNAINRKQSGSLAVRDLSNLVKPED-IITSEHLVTLLAVVPKYSQKDWLASYETLTSYVVPRSSKLLYEDNEYALYTVTLFGRVADNFRIAAREKGFQIRDFEYSSEAQESRNQELEKLVHDQESLRSSLLQWCYTSYGEVFSSWMHFCAVRVFAESILRYGLPPSFLACVLAPSVKGEKKVRSILEELCGNANST 714
            +KYP    L+ I + I   V +I++DLK R + YNN++  L  + RK +GSL  R L+ +VK +D ++ SE+LVTLL VVPK +  DW+  YETL   VVPRSS +L ED +  L  VTLF +  D+FR  ARE  F +RDF+Y+ E  ++  +E+ +L  D++     L++W   ++ E F +W+H  A+RVF ES+LRYGLP +F A +L P+ K  KK+R +L EL  + +S+
Sbjct:  110 AKYPIKQSLKNISEIIAKGVTQIDNDLKSRASAYNNLKGNLQNLERKNAGSLLTRSLAEIVKKDDFVLDSEYLVTLLVVVPKLNHNDWIKQYETLAEMVVPRSSNVLSEDQDSYLCNVTLFRKAVDDFRHKARENKFIVRDFQYNEEEMKADKEEMTRLSTDKKKQFGPLVRWLKVNFSEAFIAWIHIKALRVFVESVLRYGLPVNFQAMLLQPNKKSVKKLREVLHELYKHLDSS 345          
BLAST of CX295247 vs. ExPASy Swiss-Prot
Match: VATC1_PONAB (V-type proton ATPase subunit C 1 OS=Pongo abelii GN=ATP6V1C1 PE=2 SV=1)

HSP 1 Score: 199.519 bits (506), Expect = 1.501e-50
Identity = 102/236 (43.22%), Postives = 151/236 (63.98%), Query Frame = 1
Query:   10 SKYPTMSPLREIVDGIHTLVAKIEDDLKVRVAEYNNVRSQLNAINRKQSGSLAVRDLSNLVKPED-IITSEHLVTLLAVVPKYSQKDWLASYETLTSYVVPRSSKLLYEDNEYALYTVTLFGRVADNFRIAAREKGFQIRDFEYSSEAQESRNQELEKLVHDQESLRSSLLQWCYTSYGEVFSSWMHFCAVRVFAESILRYGLPPSFLACVLAPSVKGEKKVRSILEELCGNANST 714
            +KYP    L+ I + I   V +I++DLK R + YNN++  L  + RK +GSL  R L+ +VK +D ++ SE+LVTLL VVPK +  DW+  YETL   VVPRSS +L ED +  L  VTLF +  D+FR  ARE  F +RDF+Y+ E  ++  +E+ +L  D++     L++W   ++ E F +W+H  A+RVF ES+LRYGLP +F A +L P+ K  KK+R +L EL  + +S+
Sbjct:  110 AKYPIKQSLKNISEIIAKGVTQIDNDLKSRASAYNNLKGNLQNLERKNAGSLLTRSLAEIVKKDDFVLDSEYLVTLLVVVPKLNHNDWIKQYETLAEMVVPRSSNVLSEDQDSYLCNVTLFRKAVDDFRHKARENKFIVRDFQYNEEEMKADKEEMNRLSTDKKKQFGPLVRWLKVNFSEAFIAWIHVKALRVFVESVLRYGLPVNFQAMLLQPNKKTLKKLREVLHELYKHLDSS 345          
BLAST of CX295247 vs. ExPASy Swiss-Prot
Match: VATC1_MACFA (V-type proton ATPase subunit C 1 OS=Macaca fascicularis GN=ATP6V1C1 PE=2 SV=1)

HSP 1 Score: 199.519 bits (506), Expect = 1.501e-50
Identity = 102/236 (43.22%), Postives = 151/236 (63.98%), Query Frame = 1
Query:   10 SKYPTMSPLREIVDGIHTLVAKIEDDLKVRVAEYNNVRSQLNAINRKQSGSLAVRDLSNLVKPED-IITSEHLVTLLAVVPKYSQKDWLASYETLTSYVVPRSSKLLYEDNEYALYTVTLFGRVADNFRIAAREKGFQIRDFEYSSEAQESRNQELEKLVHDQESLRSSLLQWCYTSYGEVFSSWMHFCAVRVFAESILRYGLPPSFLACVLAPSVKGEKKVRSILEELCGNANST 714
            +KYP    L+ I + I   V +I++DLK R + YNN++  L  + RK +GSL  R L+ +VK +D ++ SE+LVTLL VVPK +  DW+  YETL   VVPRSS +L ED +  L  VTLF +  D+FR  ARE  F +RDF+Y+ E  ++  +E+ +L  D++     L++W   ++ E F +W+H  A+RVF ES+LRYGLP +F A +L P+ K  KK+R +L EL  + +S+
Sbjct:  110 AKYPIKQSLKNISEIIAKGVTQIDNDLKSRASAYNNLKGNLQNLERKNAGSLLTRSLAEIVKKDDFVLDSEYLVTLLVVVPKLNHNDWIKQYETLAEMVVPRSSNVLSEDQDSYLCNVTLFRKAVDDFRHKARENKFIVRDFQYNEEEMKADKEEMNRLSTDKKKQFGPLVRWLKVNFSEAFIAWIHVKALRVFVESVLRYGLPVNFQAMLLQPNKKTLKKLREVLHELYKHLDSS 345          
BLAST of CX295247 vs. ExPASy Swiss-Prot
Match: VATC1_HUMAN (V-type proton ATPase subunit C 1 OS=Homo sapiens GN=ATP6V1C1 PE=1 SV=4)

HSP 1 Score: 199.519 bits (506), Expect = 1.501e-50
Identity = 102/236 (43.22%), Postives = 151/236 (63.98%), Query Frame = 1
Query:   10 SKYPTMSPLREIVDGIHTLVAKIEDDLKVRVAEYNNVRSQLNAINRKQSGSLAVRDLSNLVKPED-IITSEHLVTLLAVVPKYSQKDWLASYETLTSYVVPRSSKLLYEDNEYALYTVTLFGRVADNFRIAAREKGFQIRDFEYSSEAQESRNQELEKLVHDQESLRSSLLQWCYTSYGEVFSSWMHFCAVRVFAESILRYGLPPSFLACVLAPSVKGEKKVRSILEELCGNANST 714
            +KYP    L+ I + I   V +I++DLK R + YNN++  L  + RK +GSL  R L+ +VK +D ++ SE+LVTLL VVPK +  DW+  YETL   VVPRSS +L ED +  L  VTLF +  D+FR  ARE  F +RDF+Y+ E  ++  +E+ +L  D++     L++W   ++ E F +W+H  A+RVF ES+LRYGLP +F A +L P+ K  KK+R +L EL  + +S+
Sbjct:  110 AKYPIKQSLKNISEIIAKGVTQIDNDLKSRASAYNNLKGNLQNLERKNAGSLLTRSLAEIVKKDDFVLDSEYLVTLLVVVPKLNHNDWIKQYETLAEMVVPRSSNVLSEDQDSYLCNVTLFRKAVDDFRHKARENKFIVRDFQYNEEEMKADKEEMNRLSTDKKKQFGPLVRWLKVNFSEAFIAWIHVKALRVFVESVLRYGLPVNFQAMLLQPNKKTLKKLREVLHELYKHLDSS 345          
BLAST of CX295247 vs. ExPASy Swiss-Prot
Match: VATC_DROME (V-type proton ATPase subunit C OS=Drosophila melanogaster GN=Vha44 PE=1 SV=5)

HSP 1 Score: 199.134 bits (505), Expect = 1.960e-50
Identity = 98/232 (42.24%), Postives = 151/232 (65.09%), Query Frame = 1
Query:   10 SKYPTMSPLREIVDGIHTLVAKIEDDLKVRVAEYNNVRSQLNAINRKQSGSLAVRDLSNLVKPED-IITSEHLVTLLAVVPKYSQKDWLASYETLTSYVVPRSSKLLYEDNEYALYTVTLFGRVADNFRIAAREKGFQIRDFEYSSEAQESRNQELEKLVHDQESLRSSLLQWCYTSYGEVFSSWMHFCAVRVFAESILRYGLPPSFLACVLAPSVKGEKKVRSILEELCGN 702
            +KYP    LR I D I   + +I+ DLK +   YNN++  L  + +K++GSL  R+L++LVK E  I+ SE+L TLL +VPK    DWL +YE +T  +VPRSS+L+ ED +Y L+ VTLF +VA+ F++ ARE+ F +RDF Y+ E   +   E+ KL+ D++     L++W   ++ E F + +H  A+RVF ES+LRYGLP +F A ++ P+ K  K++R +L +L G+
Sbjct:  559 AKYPIKQSLRNIADIISKQIGQIDGDLKTKSQAYNNLKGNLQNLEKKKTGSLLTRNLADLVKKEHFILDSEYLTTLLVIVPKVMANDWLTNYEKITDMIVPRSSQLIQEDADYCLFNVTLFKKVAEEFKLHARERKFIVRDFVYNEEELAAGKNEMTKLMTDKKKQFGPLVRWLKVNFSEAFCALIHVKALRVFVESVLRYGLPVNFQAILIEPNKKSVKRLRDVLNQLYGH 790          
BLAST of CX295247 vs. ExPASy Swiss-Prot
Match: VATC1_BOVIN (V-type proton ATPase subunit C 1 OS=Bos taurus GN=ATP6V1C1 PE=1 SV=3)

HSP 1 Score: 199.134 bits (505), Expect = 1.960e-50
Identity = 102/236 (43.22%), Postives = 151/236 (63.98%), Query Frame = 1
Query:   10 SKYPTMSPLREIVDGIHTLVAKIEDDLKVRVAEYNNVRSQLNAINRKQSGSLAVRDLSNLVKPED-IITSEHLVTLLAVVPKYSQKDWLASYETLTSYVVPRSSKLLYEDNEYALYTVTLFGRVADNFRIAAREKGFQIRDFEYSSEAQESRNQELEKLVHDQESLRSSLLQWCYTSYGEVFSSWMHFCAVRVFAESILRYGLPPSFLACVLAPSVKGEKKVRSILEELCGNANST 714
            +KYP    L+ I + I   V +I++DLK R + YNN++  L  + RK +GSL  R L+ +VK +D ++ SE+LVTLL VVPK +  DW+  YETL   VVPRSS +L ED +  L  VTLF +  D+FR  ARE  F +RDF+Y+ E  ++  +E+ +L  D++     L++W   ++ E F +W+H  A+RVF ES+LRYGLP +F A +L P+ K  KK+R +L EL  + +S+
Sbjct:  110 AKYPIKQSLKNISEIIAKGVTQIDNDLKSRASAYNNLKGNLQNLERKNAGSLLTRSLAEIVKKDDFVLDSEYLVTLLVVVPKLNHNDWIKQYETLAEMVVPRSSNVLSEDQDSYLCNVTLFRKAVDDFRHKARENKFIVRDFQYNEEEMKADKEEMNRLSTDKKKQFGPLVRWLKVNFSEAFIAWIHVKALRVFVESVLRYGLPVNFQAMLLQPNKKTMKKLREVLYELYKHLDSS 345          
The following BLAST results are available for this feature:
BLAST of CX295247 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 23
Match NameE-valueIdentityDescription
VATC_ARATH8.637e-11585.29V-type proton ATPase subunit C OS=Arabidopsis thal... [more]
VATC_HORVU1.592e-7666.81V-type proton ATPase subunit C OS=Hordeum vulgare ... [more]
VTC1A_DANRE1.604e-5242.80V-type proton ATPase subunit C 1-A OS=Danio rerio ... [more]
VATC1_RAT6.737e-5143.22V-type proton ATPase subunit C 1 OS=Rattus norvegi... [more]
VATC1_MOUSE6.737e-5143.22V-type proton ATPase subunit C 1 OS=Mus musculus G... [more]
VATC1_PONAB1.501e-5043.22V-type proton ATPase subunit C 1 OS=Pongo abelii G... [more]
VATC1_MACFA1.501e-5043.22V-type proton ATPase subunit C 1 OS=Macaca fascicu... [more]
VATC1_HUMAN1.501e-5043.22V-type proton ATPase subunit C 1 OS=Homo sapiens G... [more]
VATC_DROME1.960e-5042.24V-type proton ATPase subunit C OS=Drosophila melan... [more]
VATC1_BOVIN1.960e-5043.22V-type proton ATPase subunit C 1 OS=Bos taurus GN=... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC05070C01SK PhIFruit1 Citrus clementina cDNA clone C05070C01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX295247 ID=CX295247; Name=CX295247; organism=Citrus clementina; type=EST; length=724bp
GAGGGATGAAGCAAGTACCCAACTATGTCACCTTTAAGGGAAATTGTGGA
TGGCATTCATACTCTTGTGGCAAAGATTGAAGACGATCTTAAGGTTCGTG
TTGCTGAGTATAATAATGTCCGCAGTCAGCTGAATGCTATTAATCGAAAG
CAAAGTGGAAGCTTAGCTGTTCGTGATCTTTCCAATCTGGTAAAACCAGA
GGATATCATTACCTCAGAACATCTTGTAACCCTTCTTGCTGTTGTCCCCA
AGTACTCCCAGAAGGATTGGTTGGCTAGCTATGAGACGTTGACTAGCTAT
GTGGTCCCCAGGTCCTCCAAGCTATTGTATGAGGATAATGAATATGCCCT
TTACACTGTCACACTATTTGGACGTGTTGCAGACAATTTCAGAATAGCTG
CACGTGAGAAGGGCTTCCAAATTCGTGATTTTGAATATAGTTCTGAAGCA
CAAGAAAGTCGTAATCAGGAGTTGGAAAAATTAGTTCACGACCAAGAAAG
CTTGAGAAGCTCTCTTTTGCAATGGTGCTATACCAGTTACGGCGAGGTTT
TTAGTTCCTGGATGCATTTTTGTGCTGTACGTGTCTTTGCAGAGAGCATT
TTGAGATATGGTTTGCCGCCGTCTTTCTTGGCATGTGTTTTAGCTCCCTC
CGTGAAGGGTGAAAAAAAAGTGCGTTCAATTCTTGAAGAACTGTGCGGCA
ATGCGAACAGCACATTCTGGAAAT
back to top