CX295251

Overview
NameCX295251
Unique NameCX295251
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length715
Libraries
Library NameType
PhIFruit1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10307 contig Ccv1_Contig10307:114..828. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX295251 vs. ExPASy Swiss-Prot
Match: TPIC_ARATH (Triosephosphate isomerase, chloroplastic OS=Arabidopsis thaliana GN=TIM PE=1 SV=1)

HSP 1 Score: 324.324 bits (830), Expect = 3.945e-88
Identity = 166/240 (69.17%), Postives = 183/240 (76.25%), Query Frame = 2
Query:   29 MASMVSTNCAQFSGLRRSSPT---------QSFSQHVNXXXXXXXXXXXXXXXX--VVAMASSNKFFVGGNWKCNGTKESITKLVSDLNDAKLEXXXXXXXXXXFVYIDQVKNSLTDRIEIAAQNSWVGKGGAFTGEISVEQLKDIGCKWVVLGHSERRHVIGEDDQFIGKKAAYALSEGLGVIACIGEQLQEREAGKTFDVCFQQLKAYADAIPSWDNVVIAYEPVWAIGTGKVATPEQ 715
            MA+   T    FSGLRR SP          QSF   VN                  VVAMA S KFFVGGNWKCNGTK+SI KL+SDLN A LE          FVYIDQVK+SLTDRI+I+ QNSWVGKGGAFTGEISVEQLKD+GCKWV+LGHSERRHVIGE D+FIGKKAAYALSEGLGVIACIGE+L+EREAGKTFDVCF QLKA+ADA+PSWDN+V+AYEPVWAIGTGKVA+P+Q
Sbjct:    1 MAATSLTAPPSFSGLRRISPKLDAAAVSSHQSFFHRVNSSTRLVSSSSSSHRSPRGVVAMAGSGKFFVGGNWKCNGTKDSIAKLISDLNSATLEADVDVVVSPPFVYIDQVKSSLTDRIDISGQNSWVGKGGAFTGEISVEQLKDLGCKWVILGHSERRHVIGEKDEFIGKKAAYALSEGLGVIACIGEKLEEREAGKTFDVCFAQLKAFADAVPSWDNIVVAYEPVWAIGTGKVASPQQ 240          
BLAST of CX295251 vs. ExPASy Swiss-Prot
Match: TPIC_SPIOL (Triosephosphate isomerase, chloroplastic OS=Spinacia oleracea GN=TPIP1 PE=1 SV=1)

HSP 1 Score: 318.546 bits (815), Expect = 2.165e-86
Identity = 164/235 (69.79%), Postives = 185/235 (78.72%), Query Frame = 2
Query:   35 SMVSTNCAQFSGLRRS--------SPTQSFSQHVNXXXXXXXXXXXXXXXXVVAMASSNKFFVGGNWKCNGTKESITKLVSDLNDAKLEXXXXXXXXXXFVYIDQVKNSLTDRIEIAAQNSWVGKGGAFTGEISVEQLKDIGCKWVVLGHSERRHVIGEDDQFIGKKAAYALSEGLGVIACIGEQLQEREAGKTFDVCFQQLKAYADAIPSWDNVVIAYEPVWAIGTGKVATPEQ 715
            S VST   QFSGLRRS        S   SF Q+V+                VVAMA S KFFVGGNWKCNGTKESITKLVSDLN A LE          FVYIDQVK+SLT R+EI+AQN W+GKGGAFTGEISVEQLKD+GC+WV+LGHSERRHVIGE ++FIGKKAAYAL++G+GVIACIGE L+EREAGKTFDVC+QQLKA+ADA+PSWDNVV+AYEPVWAIGTGKVA+P+Q
Sbjct:   17 SAVST---QFSGLRRSFLKLENSVSTQSSFFQNVDSHLRLSSSSRRCPRG-VVAMAGSGKFFVGGNWKCNGTKESITKLVSDLNSATLEADVDVVVAPPFVYIDQVKSSLTGRVEISAQNCWIGKGGAFTGEISVEQLKDLGCQWVILGHSERRHVIGEQNEFIGKKAAYALNQGVGVIACIGELLEEREAGKTFDVCYQQLKAFADALPSWDNVVVAYEPVWAIGTGKVASPDQ 247          
BLAST of CX295251 vs. ExPASy Swiss-Prot
Match: TPIC_FRAAN (Triosephosphate isomerase, chloroplastic OS=Fragaria ananassa GN=TPI PE=2 SV=1)

HSP 1 Score: 317.005 bits (811), Expect = 6.298e-86
Identity = 155/218 (71.10%), Postives = 176/218 (80.73%), Query Frame = 2
Query:   62 FSGLRRSSPTQSFSQHVNXXXXXXXXXXXXXXXXVVAMASSNKFFVGGNWKCNGTKESITKLVSDLNDAKLEXXXXXXXXXXFVYIDQVKNSLTDRIEIAAQNSWVGKGGAFTGEISVEQLKDIGCKWVVLGHSERRHVIGEDDQFIGKKAAYALSEGLGVIACIGEQLQEREAGKTFDVCFQQLKAYADAIPSWDNVVIAYEPVWAIGTGKVATPEQ 715
            +SGLRRS P    S                    VVAMA + KFFVGGNWKCNGTK+ I+KLVSDLN AKLE          F+Y+DQVK+SLTDRIEI+ QNSWV KGGAFTGEISVEQLKDIG KWV+LGHSERRHVIGEDDQFIGKKAAYAL+EGLGVIACIGE+L+EREAGKTFDVC++QLKA+ADA+PSW+N+V+AYEPVWAIGTGKVA+P+Q
Sbjct:   22 YSGLRRSCPKLDQSHSSLFQHLSLSSSSRKASRAVVAMAGTGKFFVGGNWKCNGTKDLISKLVSDLNSAKLEPDVDVVVAPPFLYLDQVKSSLTDRIEISGQNSWVAKGGAFTGEISVEQLKDIGRKWVILGHSERRHVIGEDDQFIGKKAAYALNEGLGVIACIGEKLEEREAGKTFDVCYEQLKAFADAVPSWENIVVAYEPVWAIGTGKVASPQQ 239          
BLAST of CX295251 vs. ExPASy Swiss-Prot
Match: TPIC_SECCE (Triosephosphate isomerase, chloroplastic OS=Secale cereale PE=1 SV=1)

HSP 1 Score: 300.056 bits (767), Expect = 7.967e-81
Identity = 143/184 (77.72%), Postives = 161/184 (87.50%), Query Frame = 2
Query:  164 VVAMASSNKFFVGGNWKCNGTKESITKLVSDLNDAKLEXXXXXXXXXXFVYIDQVKNSLTDRIEIAAQNSWVGKGGAFTGEISVEQLKDIGCKWVVLGHSERRHVIGEDDQFIGKKAAYALSEGLGVIACIGEQLQEREAGKTFDVCFQQLKAYADAIPSWDNVVIAYEPVWAIGTGKVATPEQ 715
            +VAMA S KFFVGGNWKCNGTKESI+KLVSDLN A LE          F+YIDQVK+SLTDRIE++AQN+W+GKGGAFTGEIS EQL DIGC+WV+LGHSERRHVIGEDD+FIGKKAAYALS+ L V+ACIGE L+EREAGKTFDVCF+Q+KA+AD I  W NVVIAYEPVWAIGTGKVA+PEQ
Sbjct:   40 LVAMAGSGKFFVGGNWKCNGTKESISKLVSDLNAATLESDVDVVVAPPFIYIDQVKSSLTDRIEVSAQNTWIGKGGAFTGEISAEQLVDIGCQWVILGHSERRHVIGEDDEFIGKKAAYALSQNLKVMACIGELLEEREAGKTFDVCFKQMKAFADNITDWTNVVIAYEPVWAIGTGKVASPEQ 223          
BLAST of CX295251 vs. ExPASy Swiss-Prot
Match: TPIS_STELP (Triosephosphate isomerase, cytosolic OS=Stellaria longipes GN=TPI PE=2 SV=1)

HSP 1 Score: 228.409 bits (581), Expect = 2.946e-59
Identity = 109/179 (60.89%), Postives = 136/179 (75.98%), Query Frame = 2
Query:  188 KFFVGGNWKCNGTKESITKLVSDLNDAKL--EXXXXXXXXXXFVYIDQVKNSLTDRIEIAAQNSWVGKGGAFTGEISVEQLKDIGCKWVVLGHSERRHVIGEDDQFIGKKAAYALSEGLGVIACIGEQLQEREAGKTFDVCFQQLKAYAD-AIPSWDNVVIAYEPVWAIGTGKVATPEQ 715
            KFFVGGNWKCNGT+ES++K+V  LN+  +             +V++      L   I++AAQN WV KGGAFTGE+S + L ++G  WV+LGHSERR ++GE ++F+GKKAAYA SEGLGVIACIGE L+EREAGKTFDVCF+QLK++A      WDNVV+AYEPVWAIGTGKVA+PEQ
Sbjct:    4 KFFVGGNWKCNGTQESVSKIVDTLNEPTIAANDVVTVVVSPPYVFLPDENAELKHEIQVAAQNCWVKKGGAFTGEVSAQMLANLGITWVILGHSERRTLLGESNEFVGKKAAYAQSEGLGVIACIGELLEEREAGKTFDVCFKQLKSFARFPAKPWDNVVVAYEPVWAIGTGKVASPEQ 182          
BLAST of CX295251 vs. ExPASy Swiss-Prot
Match: TPIS_MAIZE (Triosephosphate isomerase, cytosolic OS=Zea mays PE=3 SV=3)

HSP 1 Score: 212.616 bits (540), Expect = 1.673e-54
Identity = 100/178 (56.18%), Postives = 126/178 (70.79%), Query Frame = 2
Query:  188 KFFVGGNWKCNGTKESITKLVSDLNDAKL--EXXXXXXXXXXFVYIDQVKNSLTDRIEIAAQNSWVGKGGAFTGEISVEQLKDIGCKWVVLGHSERRHVIGEDDQFIGKKAAYALSEGLGVIACIGEQLQEREAGKTFDVCFQQLKAYADAIPSWDNVVIAYEPVWAIGTGKVATPEQ 715
            KFFVGGNWKCNGT + + K+V  LN+ ++             +V++  VK+ L     +AAQN WV KGGAFTGE+S E L ++G  WV+LGHSERR ++GE ++F+G K AYALS+GL VIAC+GE L++REAG T DV   Q KA A+ I  W NVV+AYEPVWAIGTGKVATP Q
Sbjct:    4 KFFVGGNWKCNGTTDQVEKIVKTLNEGQVPPSDVVEVVVSPPYVFLPVVKSQLRQEFHVAAQNCWVKKGGAFTGEVSAEMLVNLGVPWVILGHSERRALLGESNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKAIAEKIKDWSNVVVAYEPVWAIGTGKVATPAQ 181          
BLAST of CX295251 vs. ExPASy Swiss-Prot
Match: TPIS_PONAB (Triosephosphate isomerase OS=Pongo abelii GN=TPI1 PE=2 SV=1)

HSP 1 Score: 211.46 bits (537), Expect = 3.727e-54
Identity = 105/181 (58.01%), Postives = 124/181 (68.51%), Query Frame = 2
Query:  173 MASSNKFFVGGNWKCNGTKESITKLVSDLNDAKLEXXXXXXXXXXFVYIDQVKNSLTDRIEIAAQNSWVGKGGAFTGEISVEQLKDIGCKWVVLGHSERRHVIGEDDQFIGKKAAYALSEGLGVIACIGEQLQEREAGKTFDVCFQQLKAYADAIPSWDNVVIAYEPVWAIGTGKVATPEQ 715
            MA S KFFVGGNWK NG K+S+ +L+  LN AK+             YID  +  L  +I +AAQN +    GAFTGEIS   +KD G  WVVLGHSERRHV GE D+ IG+K A+AL+EGLGVIACIGE+L EREAG T  V F+Q K  AD +  W  VV+AYEPVWAIGTGK ATP+Q
Sbjct:    1 MAPSRKFFVGGNWKMNGRKQSLGELIGTLNAAKVPADTEVVCAPPTAYIDFARQKLDPKIAVAAQNCYKVTNGAFTGEISPGMIKDYGATWVVLGHSERRHVFGESDELIGQKVAHALAEGLGVIACIGEKLDEREAGITEKVVFEQTKVIADNVKDWSKVVLAYEPVWAIGTGKTATPQQ 181          
BLAST of CX295251 vs. ExPASy Swiss-Prot
Match: TPIS_PANTR (Triosephosphate isomerase OS=Pan troglodytes GN=TPI1 PE=2 SV=2)

HSP 1 Score: 211.46 bits (537), Expect = 3.727e-54
Identity = 105/181 (58.01%), Postives = 124/181 (68.51%), Query Frame = 2
Query:  173 MASSNKFFVGGNWKCNGTKESITKLVSDLNDAKLEXXXXXXXXXXFVYIDQVKNSLTDRIEIAAQNSWVGKGGAFTGEISVEQLKDIGCKWVVLGHSERRHVIGEDDQFIGKKAAYALSEGLGVIACIGEQLQEREAGKTFDVCFQQLKAYADAIPSWDNVVIAYEPVWAIGTGKVATPEQ 715
            MA S KFFVGGNWK NG K+S+ +L+  LN AK+             YID  +  L  +I +AAQN +    GAFTGEIS   +KD G  WVVLGHSERRHV GE D+ IG+K A+AL+EGLGVIACIGE+L EREAG T  V F+Q K  AD +  W  VV+AYEPVWAIGTGK ATP+Q
Sbjct:    1 MAPSRKFFVGGNWKMNGRKQSLGELIGTLNAAKVPADTEVVCAPPTAYIDFARQKLDPKIAVAAQNCYKVTNGAFTGEISPGMIKDCGATWVVLGHSERRHVFGESDELIGQKVAHALAEGLGVIACIGEKLDEREAGITEKVVFEQTKVIADNVKDWSKVVLAYEPVWAIGTGKTATPQQ 181          
BLAST of CX295251 vs. ExPASy Swiss-Prot
Match: TPIS_HUMAN (Triosephosphate isomerase OS=Homo sapiens GN=TPI1 PE=1 SV=2)

HSP 1 Score: 211.46 bits (537), Expect = 3.727e-54
Identity = 105/181 (58.01%), Postives = 124/181 (68.51%), Query Frame = 2
Query:  173 MASSNKFFVGGNWKCNGTKESITKLVSDLNDAKLEXXXXXXXXXXFVYIDQVKNSLTDRIEIAAQNSWVGKGGAFTGEISVEQLKDIGCKWVVLGHSERRHVIGEDDQFIGKKAAYALSEGLGVIACIGEQLQEREAGKTFDVCFQQLKAYADAIPSWDNVVIAYEPVWAIGTGKVATPEQ 715
            MA S KFFVGGNWK NG K+S+ +L+  LN AK+             YID  +  L  +I +AAQN +    GAFTGEIS   +KD G  WVVLGHSERRHV GE D+ IG+K A+AL+EGLGVIACIGE+L EREAG T  V F+Q K  AD +  W  VV+AYEPVWAIGTGK ATP+Q
Sbjct:    1 MAPSRKFFVGGNWKMNGRKQSLGELIGTLNAAKVPADTEVVCAPPTAYIDFARQKLDPKIAVAAQNCYKVTNGAFTGEISPGMIKDCGATWVVLGHSERRHVFGESDELIGQKVAHALAEGLGVIACIGEKLDEREAGITEKVVFEQTKVIADNVKDWSKVVLAYEPVWAIGTGKTATPQQ 181          
BLAST of CX295251 vs. ExPASy Swiss-Prot
Match: TPIS_PETHY (Triosephosphate isomerase, cytosolic OS=Petunia hybrida GN=TPIP1 PE=2 SV=1)

HSP 1 Score: 211.075 bits (536), Expect = 4.867e-54
Identity = 100/178 (56.18%), Postives = 125/178 (70.22%), Query Frame = 2
Query:  188 KFFVGGNWKCNGTKESITKLVSDLN--DAKLEXXXXXXXXXXFVYIDQVKNSLTDRIEIAAQNSWVGKGGAFTGEISVEQLKDIGCKWVVLGHSERRHVIGEDDQFIGKKAAYALSEGLGVIACIGEQLQEREAGKTFDVCFQQLKAYADAIPSWDNVVIAYEPVWAIGTGKVATPEQ 715
            KFFVGGNWKCNGT E + K+++ LN  D   +          +V++  VKN L     +AAQN WV KGGAFTGE+S E L ++   WV+LGHSERR ++GE ++F+G K AYALS+GL VIAC+GE L+ERE+G T DV   Q KA AD +  W NVV+AYEPVWAIGTGKVA+P Q
Sbjct:    4 KFFVGGNWKCNGTAEEVKKILATLNAADVPSQDVVEVVVSPPYVFLPLVKNELRPDFHVAAQNCWVKKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLGESNEFVGDKVAYALSQGLKVIACVGETLEERESGSTMDVVAAQTKAIADRVKDWTNVVVAYEPVWAIGTGKVASPAQ 181          
The following BLAST results are available for this feature:
BLAST of CX295251 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
TPIC_ARATH3.945e-8869.17Triosephosphate isomerase, chloroplastic OS=Arabid... [more]
TPIC_SPIOL2.165e-8669.79Triosephosphate isomerase, chloroplastic OS=Spinac... [more]
TPIC_FRAAN6.298e-8671.10Triosephosphate isomerase, chloroplastic OS=Fragar... [more]
TPIC_SECCE7.967e-8177.72Triosephosphate isomerase, chloroplastic OS=Secale... [more]
TPIS_STELP2.946e-5960.89Triosephosphate isomerase, cytosolic OS=Stellaria ... [more]
TPIS_MAIZE1.673e-5456.18Triosephosphate isomerase, cytosolic OS=Zea mays P... [more]
TPIS_PONAB3.727e-5458.01Triosephosphate isomerase OS=Pongo abelii GN=TPI1 ... [more]
TPIS_PANTR3.727e-5458.01Triosephosphate isomerase OS=Pan troglodytes GN=TP... [more]
TPIS_HUMAN3.727e-5458.01Triosephosphate isomerase OS=Homo sapiens GN=TPI1 ... [more]
TPIS_PETHY4.867e-5456.18Triosephosphate isomerase, cytosolic OS=Petunia hy... [more]

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Properties
Property NameValue
Genbank descriptionC05070C05SK PhIFruit1 Citrus clementina cDNA clone C05070C05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX295251 ID=CX295251; Name=CX295251; organism=Citrus clementina; type=EST; length=715bp
AATTTGACTTTCACTTTGACTTTTCACAATGGCGTCAATGGTCTCCACAA
ACTGCGCTCAATTCTCCGGCCTGCGCCGCTCATCGCCCACACAGTCTTTT
TCACAGCACGTCAACTCTCACCTCCGCCTCTTCTCTTCTCGTAGACCTCG
CCGCGGCAGCAGCGTTGTCGCCATGGCCAGCTCCAACAAGTTCTTTGTTG
GGGGAAACTGGAAGTGTAATGGAACAAAGGAATCTATCACCAAGCTTGTT
TCGGACCTGAACGATGCAAAGTTGGAGGCAGATGTTGATGTTGTGGTAGC
GCCTCCCTTTGTTTACATTGATCAAGTGAAGAATTCATTAACAGATAGAA
TTGAGATAGCAGCTCAGAACTCTTGGGTCGGAAAAGGTGGAGCATTTACA
GGAGAAATCAGTGTGGAACAACTGAAAGATATTGGCTGCAAGTGGGTTGT
TCTGGGGCATTCTGAGCGCAGACATGTTATTGGTGAAGATGATCAGTTTA
TAGGGAAGAAAGCTGCCTATGCCTTGAGCGAGGGACTTGGTGTAATAGCT
TGTATCGGGGAACAGTTGCAAGAGAGAGAAGCAGGAAAAACTTTTGATGT
CTGTTTTCAGCAACTTAAAGCCTATGCAGATGCTATACCCAGTTGGGATA
ATGTAGTCATTGCATATGAGCCTGTATGGGCTATTGGAACTGGTAAAGTG
GCCACCCCCGAGCAG
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