CX295258

Overview
NameCX295258
Unique NameCX295258
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length767
Libraries
Library NameType
PhIFruit1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14818 contig Ccv1_Contig14818:512..1278. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX295258 vs. ExPASy Swiss-Prot
Match: MYRS_QUEIL (Myrcene synthase, chloroplastic OS=Quercus ilex PE=1 SV=1)

HSP 1 Score: 229.95 bits (585), Expect = 1.151e-59
Identity = 125/237 (52.74%), Postives = 158/237 (66.67%), Query Frame = 2
Query:   23 TRESFSRFMDEKGSFKLSSHSDECKGMXXXXXXXXXXXXXXSSIFRDAIRFTTAYLKEWVAKHDIDKNDDEYLCTLVKHALELPLHWRMRRLEARWFIDVYESGPDMNPILLELAKVDYNIVQAIH*EDLKYVSRWWKKTGLGEKLNFARDRVVENFFWTVGDIFEPQFGYCRRMSAMVNCLLTLIDDVYDVYGTLDELELFTDAVESHVLD----LPNNMQLRTIRLMTVVTKSFL 721
            ++E F+ F DE+GSFK +   ++ KGM               +I  +A  F+T +L+E+V +     N ++ L TLV H+LE PLHWRM RLEARWFI++Y    D+NPILLE A++D+NIVQA H  DLK VS WWK TGL E L+FARDR VENFFWTVG IF+PQFGYCRRM   V  L+T IDDVYDVYGTLDELELFTD VE   ++    LP+ M++  + L   V +  L
Sbjct:  168 SQEVFNSFKDERGSFK-ACLCEDTKGMLSLYEASFFLIEG-ENILEEARDFSTKHLEEYVKQ-----NKEKNLATLVNHSLEFPLHWRMPRLEARWFINIYRHNQDVNPILLEFAELDFNIVQAAHQADLKQVSTWWKSTGLVENLSFARDRPVENFFWTVGLIFQPQFGYCRRMFTKVFALITTIDDVYDVYGTLDELELFTDVVERWDINAMDQLPDYMKICFLTLHNSVNEMAL 397          
BLAST of CX295258 vs. ExPASy Swiss-Prot
Match: TPS2_CANSA ((+)-alpha-pinene synthase, chloroplastic OS=Cannabis sativa PE=1 SV=1)

HSP 1 Score: 201.83 bits (512), Expect = 3.358e-51
Identity = 110/234 (47.01%), Postives = 150/234 (64.10%), Query Frame = 2
Query:   26 RESFSRFMDEKGSFKLSSHSDECKGMXXXXXXXXXXXXXXSSIFRDAIRFTTAYLKEWVAKHDIDKNDDEYLCTLVKHALELPLHWRMRRLEARWFIDVYESGPDMNPILLELAKVDYNIVQAIH*EDLKYVSRWWKKTGLGE-KLNFARDRVVENFFWTVGDIFEPQFGYCRRMSAMVNCLLTLIDDVYDVYGTLDELELFTDAVE----SHVLDLPNNMQLRTIRLMTVVTK 712
            +E F+ F DE G FK S  +D+ KG+               +I  +A  FTT YLK +V   D +   ++ +  LV+HALE+PLHWR  R EA+WFI+ YE   D N  LLE AK+D+N++Q+I  EDLK+VSRWW+ + LG+ K+ +ARDR+VE F W VG  FEPQF + RR+SA +  L+T+IDD+YDVYGTL+ELELFT AVE      + +LP+ M+L    L   V +
Sbjct:  182 QEIFNDFKDETGKFKASIKNDDIKGVLALYEASFYVKNG-ENILEEARVFTTEYLKRYVMMIDQNIILNDNMAILVRHALEMPLHWRTIRAEAKWFIEEYEKTQDKNGTLLEFAKLDFNMLQSIFQEDLKHVSRWWEHSELGKNKMVYARDRLVEAFLWQVGVRFEPQFSHFRRISARIYALITIIDDIYDVYGTLEELELFTKAVERWDAKTIHELPDYMKLPFFTLFNTVNE 414          
BLAST of CX295258 vs. ExPASy Swiss-Prot
Match: RLC1_CITLI ((R)-limonene synthase 1 OS=Citrus limon PE=2 SV=1)

HSP 1 Score: 199.134 bits (505), Expect = 2.176e-50
Identity = 106/235 (45.11%), Postives = 153/235 (65.11%), Query Frame = 2
Query:   23 TRESFSRFMDEKGSFKLSSHSDECKGMXXXXXXXXXXXXXXSSIFRDAIRFTTAYLKEWVAKHDIDKNDDEYLCTLVKHALELPLHWRMRRLEARWFIDVYESGPDMNPILLELAKVDYNIVQAIH*EDLKYVSRWWKKTGLGEKLNFARDRVVENFFWTVGDIFEPQFGYCRRMSAMVNCLLTLIDDVYDVYGTLDELELFTDAVESHVLD-----LPNNMQLRTIRLMTVVTK 712
            ++E F+ F D++G F      D+ KG+               SI  +A +FT+ +LKE +   +++  +D ++    K ALELPLHW++  LEARWFI +YE   D N +LLELAK+++N +QAI+ E+LK +S WWK TGLGEKL+FAR+R+V +F W++G  FEPQF YCRR+  +   L+T+IDD+YDVYGTLDELE+FTDAVE   ++     LP  M++  + L   V +
Sbjct:  163 SQEVFNGFKDDQGGFIC----DDFKGILSLHEASYYSLEG-ESIMEEAWQFTSKHLKEVMISKNME--EDVFVAEQAKRALELPLHWKVPMLEARWFIHIYERREDKNHLLLELAKMEFNTLQAIYQEELKEISGWWKDTGLGEKLSFARNRLVASFLWSMGIAFEPQFAYCRRVLTISIALITVIDDIYDVYGTLDELEIFTDAVERWDINYALKHLPGYMKMCFLALYNFVNE 390          
BLAST of CX295258 vs. ExPASy Swiss-Prot
Match: CINS_ARATH (1,8-cineole synthase, chloroplastic OS=Arabidopsis thaliana GN=TPS27 PE=1 SV=1)

HSP 1 Score: 198.749 bits (504), Expect = 2.842e-50
Identity = 98/176 (55.68%), Postives = 125/176 (71.02%), Query Frame = 2
Query:  173 FTTAYLKEWVAKHD---IDKNDDEYLCTLVKHALELPLHWRMRRLEARWFIDVYESGPDMNPILLELAKVDYNIVQAIH*EDLKYVSRWWKKTGLGEKLNFARDRVVENFFWTVGDIFEPQFGYCRRMSAMVNCLLTLIDDVYDVYGTLDELELFTDAVE----SHVLDLPNNMQL 679
            F T  ++++V   D   I+  +  Y      HALE+P HWRMRRL+ RW+ID YE   DMN +L+E AK+D+NIVQA H EDLKYVSRWWK T L  +L F RDR+VEN+FWTVG I+EPQFGY RR+  +VN L+T IDD+YD+YGTL+ELELFT  VE    + + +LP  M+L
Sbjct:  209 FATEQIRKFVDDEDTKNIEVREKAY------HALEMPYHWRMRRLDTRWYIDAYEKKHDMNLVLIEFAKIDFNIVQAAHQEDLKYVSRWWKDTCLTNQLPFVRDRIVENYFWTVGLIYEPQFGYIRRIMTIVNALVTTIDDIYDIYGTLEELELFTSMVENWDVNRLGELPEYMRL 378          
BLAST of CX295258 vs. ExPASy Swiss-Prot
Match: MYRS2_ARATH (Myrcene/ocimene synthase 2, chloroplastic OS=Arabidopsis thaliana GN=TPS24 PE=2 SV=1)

HSP 1 Score: 195.282 bits (495), Expect = 3.143e-49
Identity = 94/171 (54.97%), Postives = 122/171 (71.35%), Query Frame = 2
Query:  215 IDKNDDEY---LCTLVKHALELPLHWRMRRLEARWFIDVYESGPDMNPILLELAKVDYNIVQAIH*EDLKYVSRWWKKTGLGEKLNFARDRVVENFFWTVGDIFEPQFGYCRRMSAMVNCLLTLIDDVYDVYGTLDELELFTDAVE----SHVLDLPNNMQLRTIRLMTVV 706
            +D   + Y   L  +  HALE+P HWRMRRLE RW+ID YE   DMN  L E AK+D+NIVQ  H ED+KYVS WWK+TGLG +L+F RDR+VEN+FWTVG I+EPQFGY RR+ A+V  L+T+IDD+YD+YGT +ELELFT  V+    + + +LP  M+L  + L   +
Sbjct:  219 VDDESETYNIMLREMAIHALEIPYHWRMRRLETRWYIDAYEKKHDMNLFLAEFAKIDFNIVQTAHQEDVKYVSCWWKETGLGSQLHFVRDRIVENYFWTVGMIYEPQFGYIRRIVAIVAALITVIDDIYDIYGTPEELELFTAMVQNWDINRLDELPEYMKLCFLTLFNEI 389          
BLAST of CX295258 vs. ExPASy Swiss-Prot
Match: TPS02_ARATH (Probable terpenoid synthase 2, chloroplastic OS=Arabidopsis thaliana GN=TPS02 PE=2 SV=1)

HSP 1 Score: 184.111 bits (466), Expect = 7.245e-46
Identity = 95/225 (42.22%), Postives = 144/225 (64.00%), Query Frame = 2
Query:   23 TRESFSRFMDEKGSFKLSSHSDECKGMXXXXXXXXXXXXXXSSIFRDAIRFTTAYLKEWVAKHD--IDKNDDEYLCTLVKHALELPLHWRMRRLEARWFIDVYESGPDMNPILLELAKVDYNIVQAIH*EDLKYVSRWWKKTGLGEKLNFARDRVVENFFWTVGDIFEPQFGYCRRMSAMVNCLLTLIDDVYDVYGTLDELELFTDAVE----SHVLDLPNNMQL 679
            ++++F  F+ E G F+ + HSD  KG+                +    I +    L E+VA+    I + D+ Y+  +VK ALE P HW +RRLEARW+I+VYE   +MNP+LLE A +D+N++QA H E+LK +S     TGL ++L+F RDR+ E++FWT+G  +EP+F YCR++   +  L+ ++DD+YD+YGTL+ELELFT+ VE    +HV  LPN M++
Sbjct:  168 SQDAFDVFISETGEFRKTLHSD-IKGLLSLYEASYFSMDSEFKLKETRI-YANKRLSEFVAESSKTICREDETYILEMVKRALETPYHWSIRRLEARWYINVYEKKHEMNPLLLEFAAIDFNMLQANHQEELKLIS----STGLMKQLDFVRDRITESYFWTIGIFYEPEFKYCRKILTKIFMLIVIMDDIYDIYGTLEELELFTNVVEKWDVNHVERLPNYMRM 386          
BLAST of CX295258 vs. ExPASy Swiss-Prot
Match: BPPS_SALOF ((+)-bornyl diphosphate synthase, chloroplastic OS=Salvia officinalis PE=1 SV=1)

HSP 1 Score: 181.8 bits (460), Expect = 3.596e-45
Identity = 103/225 (45.78%), Postives = 143/225 (63.56%), Query Frame = 2
Query:   23 TRESFSRFMDEKGSFKLSSHSDECKGMXXXXXXXXXXXXXXSSIFRDAIRFTTAYLKEWVAKHDIDKND-DEYLCTLVKHALELPLHWRMRRLEARWFIDVYESGPDMNPILLELAKVDYNIVQAIH*EDLKYVSRWWKKTGLGEKLNFARDRVVENFFWTVGDIFEP-QFGYCRRMSAMVNCLLTLIDDVYDVYGTLDELELFTDAVE----SHVLDLPNNMQL 679
            +++ F+ F +EKG    +S + + KGM               ++   A  F T  L++   K D   N+ DE L   ++H+L+LPLHWR++ +EARWFID Y   PDMNP++ ELAK+++NI+QA H ++LK +SRWW +    EKL F RDR+VE+FFW VG +FEP Q GY R+M+A +  L T+IDD+YDVYGTLDELELFTD  +      +  LP  MQL
Sbjct:  168 SQDVFNCFKNEKGIDFKASLAQDTKGMLQLYEASFLLRKGEDTL-ELAREFATKCLQK---KLDEGGNEIDENLLLWIRHSLDLPLHWRIQSVEARWFIDAYARRPDMNPLIFELAKLNFNIIQATHQQELKDLSRWWSRLCFPEKLPFVRDRLVESFFWAVG-MFEPHQHGYQRKMAATIIVLATVIDDIYDVYGTLDELELFTDTFKRWDTESITRLPYYMQL 387          
BLAST of CX295258 vs. ExPASy Swiss-Prot
Match: MYRS1_ARATH (Myrcene/ocimene synthase 1, chloroplastic OS=Arabidopsis thaliana GN=TPS10 PE=2 SV=1)

HSP 1 Score: 180.259 bits (456), Expect = 1.046e-44
Identity = 90/177 (50.85%), Postives = 125/177 (70.62%), Query Frame = 2
Query:  173 FTTAYLKEWVAKHDIDKNDDEYLCTLVK---HALELPLHWRMRRLEARWFIDVYESGPDM-NPILLELAKVDYNIVQAIH*EDLKYVSRWWKKTGLGEKLNFARDRVVENFFWTVGDIFEPQFGYCRRMSAMVNCLLTLIDDVYDVYGTLDELELFTDAVE----SHVLDLPNNMQL 679
            F T  L+++V  H    N+D   C +V+    AL++P +W+MRRL  RW+IDVY    +  N +++E AK+D+NIVQAIH E+LK VS WW +TGLG++L FARDR+VEN+FWT+G I EPQ+GY R+    +N LLT IDD+YD+YGTL+EL+LFT A E    + + +LP  M+L
Sbjct:  202 FATQQLRDFVDTHS---NEDFGSCDMVEIVVQALDMPYYWQMRRLSTRWYIDVYGKRQNYKNLVVVEFAKIDFNIVQAIHQEELKNVSSWWMETGLGKQLYFARDRIVENYFWTIGQIQEPQYGYVRQTMTKINALLTTIDDIYDIYGTLEELQLFTVAFENWDINRLDELPEYMRL 375          
BLAST of CX295258 vs. ExPASy Swiss-Prot
Match: OCIS_ARATH ((E)-beta-ocimene synthase, chloroplastic OS=Arabidopsis thaliana GN=TPS03 PE=2 SV=1)

HSP 1 Score: 179.104 bits (453), Expect = 2.331e-44
Identity = 92/191 (48.17%), Postives = 136/191 (71.20%), Query Frame = 2
Query:  158 RDAIRFTTAYLKEWVAKHDIDKNDDEY--LCTLVKHALELPLHWRMRRLEARWFIDVYESGPDMNPILLELAKVDYNIVQAIH*EDLKYVSRWWKKTGLGEKLNFARDRVVENFFWTVGDIFEPQFGYCRRMSAMVNCLLTLIDDVYDVYGTLDELELFTDAVE----SHVLDLPNNMQLRTIRLMTVVTK 712
            +++I +TT  L+++V   +++KN+ +   L  +V HALE+P H R+ RLEARW+I+VY    DMNPILLELAK+D+N VQAIH ++LK +S WW KTGL + L+F RDR+ E +F +VG ++EP+F Y R+M   V  L+T IDD+YD+YGTL+EL+LFT  VE    + + +LPN M+L  + L+  + +
Sbjct:  180 KESIYYTTKRLRKFV---EVNKNETKSYTLRRMVIHALEMPYHRRVGRLEARWYIEVYGERHDMNPILLELAKLDFNFVQAIHQDELKSLSSWWSKTGLTKHLDFVRDRITEGYFSSVGVMYEPEFAYHRQMLTKVFMLITTIDDIYDIYGTLEELQLFTTIVEKWDVNRLEELPNYMKLCFLCLVNEINQ 367          
BLAST of CX295258 vs. ExPASy Swiss-Prot
Match: TPS1_CANSA ((-)-limonene synthase, chloroplastic OS=Cannabis sativa GN=TPS1 PE=1 SV=1)

HSP 1 Score: 178.333 bits (451), Expect = 3.975e-44
Identity = 95/208 (45.67%), Postives = 132/208 (63.46%), Query Frame = 2
Query:   26 RESFSRFMDEK-GSFKLSSHSDECKGMXXXXXXXXXXXXXXSSIFRDAIRFTTAYLKEWVAKHDIDKNDDEYLCTLVKHALELPLHWRMRRLEARWFID-VYESGPDMNPILLELAKVDYNIVQAIH*EDLKYVSRWWKKTGLGEKLNFARDRVVENFFWTVGDIFEPQFGYCRRMSAMVNCLLTLIDDVYDVYGTLDELELFTDAVE 643
            +E F+ F + K G FK +  +D    +               SI  +A  FTT  LK++      + N+   +  LV HALE+PL WR+ R EA+WFI+ +YE   DMNP LLE AK+D+N++Q+ + E+LK +SRWWK + LGEKL F RDR+VE F W VG  FEPQF Y R M   +  LLT+IDD++D+YGTL+EL+LFT+A++
Sbjct:  188 QEIFNNFKNHKTGEFKANISNDIMGALGLYEASFHGKKG--ESILEEARIFTTKCLKKYKLMSSSNNNNMTLISLLVNHALEMPLQWRITRSEAKWFIEEIYERKQDMNPTLLEFAKLDFNMLQSTYQEELKVLSRWWKDSKLGEKLPFVRDRLVECFLWQVGVRFEPQFSYFRIMDTKLYVLLTIIDDMHDIYGTLEELQLFTNALQ 393          
The following BLAST results are available for this feature:
BLAST of CX295258 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 43
Match NameE-valueIdentityDescription
MYRS_QUEIL1.151e-5952.74Myrcene synthase, chloroplastic OS=Quercus ilex PE... [more]
TPS2_CANSA3.358e-5147.01(+)-alpha-pinene synthase, chloroplastic OS=Cannab... [more]
RLC1_CITLI2.176e-5045.11(R)-limonene synthase 1 OS=Citrus limon PE=2 SV=1[more]
CINS_ARATH2.842e-5055.681,8-cineole synthase, chloroplastic OS=Arabidopsis... [more]
MYRS2_ARATH3.143e-4954.97Myrcene/ocimene synthase 2, chloroplastic OS=Arabi... [more]
TPS02_ARATH7.245e-4642.22Probable terpenoid synthase 2, chloroplastic OS=Ar... [more]
BPPS_SALOF3.596e-4545.78(+)-bornyl diphosphate synthase, chloroplastic OS=... [more]
MYRS1_ARATH1.046e-4450.85Myrcene/ocimene synthase 1, chloroplastic OS=Arabi... [more]
OCIS_ARATH2.331e-4448.17(E)-beta-ocimene synthase, chloroplastic OS=Arabid... [more]
TPS1_CANSA3.975e-4445.67(-)-limonene synthase, chloroplastic OS=Cannabis s... [more]

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Properties
Property NameValue
Genbank descriptionC05070C12SK PhIFruit1 Citrus clementina cDNA clone C05070C12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX295258 ID=CX295258; Name=CX295258; organism=Citrus clementina; type=EST; length=767bp
GAGGCCTCGTGCCGAATTCGGCACGAGGGAAAGTTTTTCACGTTTCATGG
ATGAGAAGGGGAGCTTTAAGTTATCAAGCCACAGTGACGAATGCAAAGGA
ATGTTAGCTCTGTATGAAGCTGCATACCTCCTGGTAGAAGAAGAAAGCAG
TATCTTTCGTGACGCTATAAGGTTCACCACCGCATATCTCAAAGAATGGG
TGGCCAAGCATGATATTGACAAAAATGATGATGAATATCTTTGTACATTA
GTGAAACATGCTTTGGAACTTCCACTACATTGGAGGATGCGAAGATTGGA
GGCAAGGTGGTTCATCGATGTATACGAAAGTGGACCAGACATGAACCCTA
TCTTGCTCGAGCTTGCTAAAGTTGACTATAATATTGTGCAAGCAATACAC
TAAGAGGATCTCAAATATGTGTCAAGGTGGTGGAAGAAAACAGGACTTGG
GGAGAAGTTGAATTTTGCAAGAGACAGAGTAGTGGAGAATTTCTTCTGGA
CCGTGGGGGATATATTCGAACCTCAGTTTGGATATTGTAGAAGGATGTCT
GCAATGGTTAATTGTCTTTTAACATTAATCGATGATGTTTATGATGTCTA
TGGGACCTTGGACGAACTTGAGCTATTCACTGATGCAGTTGAGAGTCATG
TACTAGATCTCCCAAATAACATGCAGTTGCGTACTATAAGACTCATGACT
GTGGTCACCAAATCGTTCCTCCTCATAATAATAAATATTATTTAAGTCTC
TAAAAAAAAAAAAAAAC
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