CX295270

Overview
NameCX295270
Unique NameCX295270
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length714
Libraries
Library NameType
PhIFruit1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX295270 vs. ExPASy Swiss-Prot
Match: EF1D2_ARATH (Elongation factor 1-delta 2 OS=Arabidopsis thaliana GN=At2g18110 PE=2 SV=1)

HSP 1 Score: 206.453 bits (524), Expect = 1.199e-52
Identity = 113/209 (54.07%), Postives = 128/209 (61.24%), Query Frame = 1
Query:  103 AFDNVNSATGLKKLDEYLLTRSYITGYQASKDDITVYSALSKAPSSEYVNVSRWYKHIDALLRIXXXXXXXXXXXXXXXAPVATXXXXXXXXXXXXXXXXXXX------LFGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVLLDVKPWDDETDMKKLEEAVRSVQMEGLLWGASKLAPVGYGIKKLQIMLTIVDDLVSVDTLIEEHL 711
            AF N+NS +GLKKLDE+LLTRSYITGYQASKDDITV++ALSK P+SE+VNVSRW+ HIDALLRI               +P+                           LFG                              VL+D+KPWDDETDMKKLEEAVRS+QMEGL WGASKL PVGYGIKKL IM TIVDDLVS+DT+IEE L
Sbjct:    3 AFPNLNSGSGLKKLDEHLLTRSYITGYQASKDDITVFTALSKPPTSEFVNVSRWFNHIDALLRISGVSAEGSGVIVEGSSPITEEAVATPPAADSKDTAAEEEDDDDVDLFGEETEEEKKAAEERAASVKASTKKKESGKSSVLMDIKPWDDETDMKKLEEAVRSIQMEGLFWGASKLVPVGYGIKKLHIMCTIVDDLVSIDTMIEEQL 211          
BLAST of CX295270 vs. ExPASy Swiss-Prot
Match: EF1D1_ARATH (Elongation factor 1-delta 1 OS=Arabidopsis thaliana GN=At1g30230 PE=2 SV=2)

HSP 1 Score: 205.297 bits (521), Expect = 2.671e-52
Identity = 112/209 (53.59%), Postives = 127/209 (60.77%), Query Frame = 1
Query:  103 AFDNVNSATGLKKLDEYLLTRSYITGYQASKDDITVYSALSKAPSSEYVNVSRWYKHIDALLRIXXXXXXXXXXXXXXXAPVATXXXXXXXXXXXXXXXXXXX------LFGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVLLDVKPWDDETDMKKLEEAVRSVQMEGLLWGASKLAPVGYGIKKLQIMLTIVDDLVSVDTLIEEHL 711
            AF N+NS  GLKKLDE+LLTRSYITGYQASKDDITV++AL+K P+S+YVN SRWY HIDALLRI               AP+                           LFG                              VL+D+KPWDDETDMKKLEEAV+S+QMEGL WGASKL PVGYGIKKLQI+ TIVDDLVS+DT+IEE L
Sbjct:    3 AFPNLNSDAGLKKLDEHLLTRSYITGYQASKDDITVFAALAKPPTSQYVNASRWYNHIDALLRISGVSAEGSGVIVEGSAPITEEAVATPPAADSKDAAADEEDDDDVDLFGEETEEEKKAAEERAASVKASTKKKESGKSSVLIDIKPWDDETDMKKLEEAVKSIQMEGLFWGASKLVPVGYGIKKLQILCTIVDDLVSIDTMIEEQL 211          
BLAST of CX295270 vs. ExPASy Swiss-Prot
Match: EF1D1_ORYSJ (Elongation factor 1-delta 1 OS=Oryza sativa subsp. japonica GN=Os07g0614500 PE=2 SV=3)

HSP 1 Score: 199.519 bits (506), Expect = 1.465e-50
Identity = 114/208 (54.81%), Postives = 128/208 (61.54%), Query Frame = 1
Query:   94 MAVAFDNVNSATGLKKLDEYLLTRSYITGYQASKDDITVYSALSKAPSSEYVNVSRWYKHIDALLRIXXXXXXXXXXXXXXXA-PVATXXXXXXXXXXXXXXXXXXX--LFGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVLLDVKPWDDETDMKKLEEAVRSVQMEGLLWGASKLAPVGYGIKKLQIMLTIVDDLVSVDTLIEEH 708
            MAV+F NV+S  GLKKLDEYLLTRSYI+GYQAS DD+ VYSA S APSS Y NV+RW+ HIDALLR+               A P A+                     LFG                              VLLDVKPWDDETDM KLEEAVR+V+MEGLLWGASKL PVGYGIKKLQIM+TIVDDLVSVD+LIE++
Sbjct:    1 MAVSFTNVSSEAGLKKLDEYLLTRSYISGYQASNDDLAVYSAFSTAPSSSYTNVARWFTHIDALLRLSGVTADGQGVKVESTAVPSASTPDVADAKAPAADDDDDDDVDLFGEETEEEKKAAEERAAAVKASGKKKESGKSSVLLDVKPWDDETDMTKLEEAVRNVKMEGLLWGASKLVPVGYGIKKLQIMMTIVDDLVSVDSLIEDY 208          
BLAST of CX295270 vs. ExPASy Swiss-Prot
Match: EF1D2_ORYSJ (Elongation factor 1-delta 2 OS=Oryza sativa subsp. japonica GN=Os03g0406200 PE=2 SV=3)

HSP 1 Score: 197.978 bits (502), Expect = 4.264e-50
Identity = 108/205 (52.68%), Postives = 125/205 (60.98%), Query Frame = 1
Query:   94 MAVAFDNVNSATGLKKLDEYLLTRSYITGYQASKDDITVYSALSKAPSSEYVNVSRWYKHIDALLRIXXXXXXXXXXXXXXXAPVATXXXXXXXXXXXXXXXXXXXLFGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVLLDVKPWDDETDMKKLEEAVRSVQMEGLLWGASKLAPVGYGIKKLQIMLTIVDDLVSVDTLIEEH 708
            MA+   NVNS  GL+KLDEYLLTRSYI+GYQASKDD+TV+++L  AP++ YVNV+RWY HI ALLR                A   +                   LFG                              VLLDVKPWDDETDM KLEEAVR+V+MEGLLWGASKL PVGYGIKKLQIM+TIVDDLVSVD+LIE++
Sbjct:    1 MAITLSNVNSEAGLQKLDEYLLTRSYISGYQASKDDMTVFTSLPSAPAASYVNVTRWYDHISALLRSSGVTAEGEGVKVESTACSVSPTADQKAPAADEEDDDDVDLFGEETEEEKKAAEERAAAVKASGKKKESGKSSVLLDVKPWDDETDMAKLEEAVRNVKMEGLLWGASKLVPVGYGIKKLQIMMTIVDDLVSVDSLIEDY 205          
BLAST of CX295270 vs. ExPASy Swiss-Prot
Match: EF1D_PIMBR (Elongation factor 1-delta OS=Pimpinella brachycarpa PE=2 SV=3)

HSP 1 Score: 196.823 bits (499), Expect = 9.499e-50
Identity = 107/206 (51.94%), Postives = 127/206 (61.65%), Query Frame = 1
Query:   94 MAVAFDNVNSATGLKKLDEYLLTRSYITGYQASKDDITVYSALSKAPSSEYVNVSRWYKHIDALLRIXXXXXXXXXXXXXXXAPVATXXXXXXXXXXXXXXXXXXXLFGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVLLDVKPWDDETDMKKLEEAVRSVQMEGLLWGASKLAPVGYGIKKLQIMLTIVDDLVSVDTLIEEHL 711
            MAV F +++S  GL+KLDEYLL+RSYI+GYQASKDD+ V++AL+K PSS+YVNVSRWY H++ALLRI               +                       LFG                              VLLDVKPWDDETDM KLEEAVRS++M+GLLWGASKL  VGYGIKKLQIMLTIVDDLVSVD L+E++L
Sbjct:    1 MAVTFYDLSSEAGLEKLDEYLLSRSYISGYQASKDDLAVHAALAKPPSSKYVNVSRWYNHVEALLRISGVSAEGCGVTVEGSSVATPPVADTKASAAEDDDDDDVDLFGEETEEEKKASEERAAAVKASGKKKESGKSSVLLDVKPWDDETDMTKLEEAVRSIKMDGLLWGASKLVAVGYGIKKLQIMLTIVDDLVSVDDLVEDYL 206          
BLAST of CX295270 vs. ExPASy Swiss-Prot
Match: EF1D_BETVU (Elongation factor 1-delta OS=Beta vulgaris PE=2 SV=3)

HSP 1 Score: 187.578 bits (475), Expect = 5.763e-47
Identity = 114/211 (54.03%), Postives = 125/211 (59.24%), Query Frame = 1
Query:   94 MAVAFDNVNSATGLKKLDEYLLTRSYITGYQASKDDITVYSALSKAPSSEYVNVSRWYKHIDALLRIXXXXXXXXXXXXXXXAP---VATXXXXXXXXXXXXXXXXXXX-LFGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX-VLLDVKPWDDETDMKKLEEAVRSVQMEGLLWGASKLAPVGYGIKKLQIMLTIVDDLVSVDTLIEEHL 711
            MAV F +++S  GL  LD YLL+RSYITGYQASKDD+TV+SA+ KA  + YVNVSRWYKHIDALLRI               AP   VAT                    LFG                               VLLDVKPWDDETDMKKLEEAVRSVQ EGL  GASKL PVGYGIKKL IM+TIVDDLVSVD LIE++L
Sbjct:    1 MAVTFSDLSSPAGLDSLDAYLLSRSYITGYQASKDDLTVFSAVPKASLASYVNVSRWYKHIDALLRISGVSGEGSGVTVEGNAPASDVATPPAADSKASAADDDDDDDVDLFGEETEEEKKAAEERAAAAAAKPAKKKESGKSSVLLDVKPWDDETDMKKLEEAVRSVQQEGLTLGASKLVPVGYGIKKLTIMMTIVDDLVSVDNLIEDYL 211          
BLAST of CX295270 vs. ExPASy Swiss-Prot
Match: EF1B1_ARATH (Elongation factor 1-beta 1 OS=Arabidopsis thaliana GN=At5g12110 PE=2 SV=2)

HSP 1 Score: 151.369 bits (381), Expect = 4.577e-36
Identity = 90/208 (43.27%), Postives = 110/208 (52.88%), Query Frame = 1
Query:   94 MAVAFDNVNSATGLKKLDEYLLTRSYITGYQASKDDITVYSALSKAPSSEYVNVSRWYKHIDALLRIXXXXXXXXXXXXXXXAPV--ATXXXXXXXXXXXXXXXXXXXLFGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVLLDVKPWDDETDMKKLEEAVRSVQMEGLLWGASKLAPVGYGIKKLQIMLTIVDDLVSVDTLIEEHL 711
            MAV F ++++  GLK L+E+L  ++YI+G Q S DD+ VY+A+ + P   + N S+WY  + + L                 AP   A                    LF                               VLL+VKPWDDETDMKKLEEAVRSVQM GL WGASKL PVGYGIKKL IM+TIVDDLVSVD LIE+HL
Sbjct:    1 MAVTFSDLHTERGLKTLEEHLAGKTYISGDQLSVDDVKVYAAVLENPGDGFPNASKWYDSVASHLAKSFPGKADGVRVGGGVAPPSEAHPHTEEPAADGDGDDDDDIDLFADETEDEKKAAEEREAAKKDTKKTKESGKSSVLLEVKPWDDETDMKKLEEAVRSVQMPGLTWGASKLVPVGYGIKKLTIMMTIVDDLVSVDNLIEDHL 208          
BLAST of CX295270 vs. ExPASy Swiss-Prot
Match: EF1B2_ARATH (Elongation factor 1-beta 2 OS=Arabidopsis thaliana GN=At5g19510 PE=1 SV=1)

HSP 1 Score: 145.591 bits (366), Expect = 2.511e-34
Identity = 83/206 (40.29%), Postives = 108/206 (52.43%), Query Frame = 1
Query:   94 MAVAFDNVNSATGLKKLDEYLLTRSYITGYQASKDDITVYSALSKAPSSEYVNVSRWYKHIDALLRIXXXXXXXXXXXXXXXAPVATXXXXXXXXXXXXXXXXXXXLFGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVLLDVKPWDDETDMKKLEEAVRSVQMEGLLWGASKLAPVGYGIKKLQIMLTIVDDLVSVDTLIEEHL 711
            MAV F ++++  G+K ++E+L  ++YI+G Q S DD+ VY+A+   PS  + N S+WY+ + +  ++               +  A                    LFG                              VL+DVKPWDDETDMKKLEEAVR V+M GL WGASKL PVGYGIKKL IM TIVDDLVS D LIE+ L
Sbjct:    1 MAVTFSDLHTEEGVKSVEEHLAGKTYISGDQLSVDDVKVYAAVPVKPSDAFPNASKWYESVAS--QLAKSFPGKAVGVQFGGSAAAAPAVEAEAPAAAADDDDDMDLFGDETEEEKKAAEEREAAKKDTKKPKESGKSSVLMDVKPWDDETDMKKLEEAVRGVEMPGLFWGASKLVPVGYGIKKLTIMFTIVDDLVSPDNLIEDFL 204          
BLAST of CX295270 vs. ExPASy Swiss-Prot
Match: EF1B_ORYSJ (Elongation factor 1-beta OS=Oryza sativa subsp. japonica GN=Os07g0662500 PE=1 SV=3)

HSP 1 Score: 129.798 bits (325), Expect = 1.426e-29
Identity = 64/67 (95.52%), Postives = 65/67 (97.01%), Query Frame = 1
Query:  511 VLLDVKPWDDETDMKKLEEAVRSVQMEGLLWGASKLAPVGYGIKKLQIMLTIVDDLVSVDTLIEEHL 711
            VLLDVKPWDDETDMKKLEEAVRSVQMEGL WGASKL PVGYGIKKLQIMLTIVDDLVSVD+LIEEHL
Sbjct:  138 VLLDVKPWDDETDMKKLEEAVRSVQMEGLTWGASKLVPVGYGIKKLQIMLTIVDDLVSVDSLIEEHL 204          
BLAST of CX295270 vs. ExPASy Swiss-Prot
Match: EF1B_WHEAT (Elongation factor 1-beta OS=Triticum aestivum PE=1 SV=2)

HSP 1 Score: 112.079 bits (279), Expect = 3.077e-24
Identity = 57/67 (85.07%), Postives = 60/67 (89.55%), Query Frame = 1
Query:  511 VLLDVKPWDDETDMKKLEEAVRSVQMEGLLWGASKLAPVGYGIKKLQIMLTIVDDLVSVDTLIEEHL 711
            VL+D+KPWDDETDMKKLEEAVRSVQMEGL WGASKL PVGYGIKKLQIMLTI+DDL S  T IEE L
Sbjct:  132 VLMDIKPWDDETDMKKLEEAVRSVQMEGLTWGASKLMPVGYGIKKLQIMLTIIDDLAS--TPIEEVL 196          
The following BLAST results are available for this feature:
BLAST of CX295270 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 37
Match NameE-valueIdentityDescription
EF1D2_ARATH1.199e-5254.07Elongation factor 1-delta 2 OS=Arabidopsis thalian... [more]
EF1D1_ARATH2.671e-5253.59Elongation factor 1-delta 1 OS=Arabidopsis thalian... [more]
EF1D1_ORYSJ1.465e-5054.81Elongation factor 1-delta 1 OS=Oryza sativa subsp.... [more]
EF1D2_ORYSJ4.264e-5052.68Elongation factor 1-delta 2 OS=Oryza sativa subsp.... [more]
EF1D_PIMBR9.499e-5051.94Elongation factor 1-delta OS=Pimpinella brachycarp... [more]
EF1D_BETVU5.763e-4754.03Elongation factor 1-delta OS=Beta vulgaris PE=2 SV... [more]
EF1B1_ARATH4.577e-3643.27Elongation factor 1-beta 1 OS=Arabidopsis thaliana... [more]
EF1B2_ARATH2.511e-3440.29Elongation factor 1-beta 2 OS=Arabidopsis thaliana... [more]
EF1B_ORYSJ1.426e-2995.52Elongation factor 1-beta OS=Oryza sativa subsp. ja... [more]
EF1B_WHEAT3.077e-2485.07Elongation factor 1-beta OS=Triticum aestivum PE=1... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC05070D12SK PhIFruit1 Citrus clementina cDNA clone C05070D12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX295270 ID=CX295270; Name=CX295270; organism=Citrus clementina; type=EST; length=714bp
AGGCCTCGTGCCGAATTCGGCACGAGGGTAGAGACCTCGCCACTCTCCCT
CCGAGCTAATCTCCCCATTGCTCTTTCTCTCTCCGTTACAGCTATGGCCG
TCGCATTCGATAATGTCAACTCAGCCACTGGTCTGAAGAAACTCGATGAA
TACCTTCTTACTCGCAGTTACATTACTGGGTACCAAGCTTCAAAGGATGA
TATCACTGTGTATTCAGCTCTTTCAAAAGCACCATCATCTGAATATGTCA
ATGTGTCTCGGTGGTACAAGCATATTGATGCACTCTTAAGGATCTCTGGC
GTTACTGGTGAAGGCTCTGGTGTCACTGTAGAGGGATCTGCTCCTGTTGC
TACTCCCCCGGTAGCTGACTCAAAGGCAGCAGCTCCTGATGATGACGACG
ATGATGTGGATCTATTTGGTGAGGAGACAGAAGAGGAAAAGAAGGCTGCC
GAGGCACGCGCGGCTTCCGTCAAAGCATCAGCCAAAAAGAAAGAATCTGG
CAAGTCATCAGTTCTATTGGATGTGAAGCCTTGGGATGATGAGACTGACA
TGAAGAAGCTTGAGGAAGCAGTAAGAAGTGTTCAGATGGAAGGATTACTC
TGGGGAGCCAGCAAACTTGCACCTGTTGGATATGGTATCAAGAAATTGCA
AATAATGCTTACAATTGTGGATGACTTGGTGTCTGTTGACACCCTCATTG
AGGAACACCTGCTG
back to top