CX295272

Overview
NameCX295272
Unique NameCX295272
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length738
Libraries
Library NameType
PhIFruit1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15227 contig Ccv1_Contig15227:439..1176. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX295272 vs. ExPASy Swiss-Prot
Match: FAD6C_SOYBN (Omega-6 fatty acid desaturase, chloroplastic OS=Glycine max PE=2 SV=1)

HSP 1 Score: 473.781 bits (1218), Expect = 4.253e-133
Identity = 208/240 (86.67%), Postives = 225/240 (93.75%), Query Frame = 3
Query:   18 KVFEIDDVKAWKSVLLSVSSYALGLLMISKAPWYLLPLAWAWTGTAVTGFFVIGHDCAHKSFSKNKLLEDIVGTLAFLPLIYPYEPWRFKHDKHHAKTNMLNGDTAWHPVWKEEFDTSPFLRKAIIYGYGPFRPWMSIAHWLIWHFDLSKFRPNEVKRVKISLACVFAFMAIGWPLIILKTGIAGWIKYWLMPWLGYHFWMSTFTMVHHTAPHIPFKSPNEWNAAQAQLNGTVHCDYPKW 737
            +VFEIDDVKAWKSVL+SV+SYALGL MISKAPWYLLPLAW WTGTA+TGFFVIGHDCAH+SFS NKL+EDIVGTLAF+PLIYPYEPWRFKHD+HHAKTNML  DTAWHPVWK+EF+++P LRKAIIYGYGPFR WMSIAHWL+WHFDL KFRP+EV RVKISLACVFAF+AIGWPLII KTGI GWIK+WLMPWLGYHFWMSTFTMVHHTAP+IPFK   EWN AQAQLNGTVHCDYPKW
Sbjct:  111 EVFEIDDVKAWKSVLISVTSYALGLFMISKAPWYLLPLAWVWTGTAITGFFVIGHDCAHRSFSSNKLVEDIVGTLAFMPLIYPYEPWRFKHDRHHAKTNMLREDTAWHPVWKDEFESTPLLRKAIIYGYGPFRCWMSIAHWLMWHFDLKKFRPSEVPRVKISLACVFAFIAIGWPLIIYKTGIMGWIKFWLMPWLGYHFWMSTFTMVHHTAPYIPFKYSEEWNRAQAQLNGTVHCDYPKW 350          
BLAST of CX295272 vs. ExPASy Swiss-Prot
Match: FAD6C_BRANA (Omega-6 fatty acid desaturase, chloroplastic OS=Brassica napus PE=2 SV=1)

HSP 1 Score: 466.463 bits (1199), Expect = 6.790e-131
Identity = 207/244 (84.84%), Postives = 225/244 (92.21%), Query Frame = 3
Query:    6 TLCYKVFEIDDVKAWKSVLLSVSSYALGLLMISKAPWYLLPLAWAWTGTAVTGFFVIGHDCAHKSFSKNKLLEDIVGTLAFLPLIYPYEPWRFKHDKHHAKTNMLNGDTAWHPVWKEEFDTSPFLRKAIIYGYGPFRPWMSIAHWLIWHFDLSKFRPNEVKRVKISLACVFAFMAIGWPLIILKTGIAGWIKYWLMPWLGYHFWMSTFTMVHHTAPHIPFKSPNEWNAAQAQLNGTVHCDYPKW 737
            TL  +VFEIDDVKAWKSVL+SV+SYALGL MI+KAPWYLLPLAWAWTGTAVTGFFVIGHDCAHKSFSKNKL+EDIVGTLAFLPL+YPYEPWRFKHD+HHAKTNML  DTAW PV  EEFD+SP LRKAII+GYGP RPW+SIAHW+ WHF+L KFRP+EV RVKISLACVFAFMA+GWPLII K G+ GW+K+WLMPWLGYHFWMSTFTMVHHTAPHIPFK  +EWNAAQAQLNGTVHCDYP W
Sbjct:  108 TLPKEVFEIDDVKAWKSVLISVTSYALGLFMIAKAPWYLLPLAWAWTGTAVTGFFVIGHDCAHKSFSKNKLVEDIVGTLAFLPLVYPYEPWRFKHDRHHAKTNMLVHDTAWQPVPPEEFDSSPVLRKAIIFGYGPIRPWLSIAHWVNWHFNLRKFRPSEVNRVKISLACVFAFMAVGWPLIIYKVGVLGWVKFWLMPWLGYHFWMSTFTMVHHTAPHIPFKPADEWNAAQAQLNGTVHCDYPSW 351          
BLAST of CX295272 vs. ExPASy Swiss-Prot
Match: FAD6C_ARATH (Omega-6 fatty acid desaturase, chloroplastic OS=Arabidopsis thaliana GN=FAD6 PE=1 SV=2)

HSP 1 Score: 452.21 bits (1162), Expect = 1.325e-126
Identity = 199/244 (81.56%), Postives = 222/244 (90.98%), Query Frame = 3
Query:    6 TLCYKVFEIDDVKAWKSVLLSVSSYALGLLMISKAPWYLLPLAWAWTGTAVTGFFVIGHDCAHKSFSKNKLLEDIVGTLAFLPLIYPYEPWRFKHDKHHAKTNMLNGDTAWHPVWKEEFDTSPFLRKAIIYGYGPFRPWMSIAHWLIWHFDLSKFRPNEVKRVKISLACVFAFMAIGWPLIILKTGIAGWIKYWLMPWLGYHFWMSTFTMVHHTAPHIPFKSPNEWNAAQAQLNGTVHCDYPKW 737
            TL  +VFEIDD+KA KSVL+SV+SY LGL MI+K+PWYLLPLAWAWTGTA+TGFFVIGHDCAHKSFSKNKL+EDIVGTLAFLPL+YPYEPWRFKHD+HHAKTNML  DTAW PV  EEF++SP +RKAII+GYGP RPW+SIAHW+ WHF+L KFR +EV RVKISLACVFAFMA+GWPLI+ K GI GW+K+WLMPWLGYHFWMSTFTMVHHTAPHIPFK  +EWNAAQAQLNGTVHCDYP W
Sbjct:  113 TLPKEVFEIDDLKALKSVLISVTSYTLGLFMIAKSPWYLLPLAWAWTGTAITGFFVIGHDCAHKSFSKNKLVEDIVGTLAFLPLVYPYEPWRFKHDRHHAKTNMLVHDTAWQPVPPEEFESSPVMRKAIIFGYGPIRPWLSIAHWVNWHFNLKKFRASEVNRVKISLACVFAFMAVGWPLIVYKVGILGWVKFWLMPWLGYHFWMSTFTMVHHTAPHIPFKPADEWNAAQAQLNGTVHCDYPSW 356          
BLAST of CX295272 vs. ExPASy Swiss-Prot
Match: FAD6C_SPIOL (Omega-6 fatty acid desaturase, chloroplastic OS=Spinacia oleracea GN=FAD6 PE=1 SV=1)

HSP 1 Score: 434.106 bits (1115), Expect = 3.734e-121
Identity = 192/240 (80.00%), Postives = 214/240 (89.17%), Query Frame = 3
Query:   18 KVFEIDDVKAWKSVLLSVSSYALGLLMISKAPWYLLPLAWAWTGTAVTGFFVIGHDCAHKSFSKNKLLEDIVGTLAFLPLIYPYEPWRFKHDKHHAKTNMLNGDTAWHPVWKEEFDTSPFLRKAIIYGYGPFRPWMSIAHWLIWHFDLSKFRPNEVKRVKISLACVFAFMAIGWPLIILKTGIAGWIKYWLMPWLGYHFWMSTFTMVHHTAPHIPFKSPNEWNAAQAQLNGTVHCDYPKW 737
            +VFEI+D KAW +VL+SV+SYALG+ MI+KAPWYLLPLAWAWTGTA+TGFFVIGHDCAHKSFSKNKL+EDIVGTLAF+PLIYPYEPWRFKHD+HH KTNML  DTAW P+ KE+ ++SP LRKA+IY YGP R WMSIAHWL  HF+L  FR +EVKR  ISLA VFAFM IGWPLII KTGI GWIK+WLMPWLGYHFWMSTFT+VHHTAPHIPFKS  EWNAAQAQL+GTVHCDYP+W
Sbjct:  117 QVFEINDTKAWGTVLISVTSYALGIFMIAKAPWYLLPLAWAWTGTAITGFFVIGHDCAHKSFSKNKLVEDIVGTLAFMPLIYPYEPWRFKHDQHHTKTNMLREDTAWLPIMKEDIESSPGLRKALIYAYGPLRTWMSIAHWLKVHFNLKDFRQSEVKRATISLAAVFAFMVIGWPLIIYKTGIVGWIKFWLMPWLGYHFWMSTFTIVHHTAPHIPFKSSKEWNAAQAQLSGTVHCDYPRW 356          
BLAST of CX295272 vs. ExPASy Swiss-Prot
Match: DESA_SYNY3 (Fatty acid desaturase OS=Synechocystis sp. (strain PCC 6803) GN=desA PE=3 SV=1)

HSP 1 Score: 283.108 bits (723), Expect = 1.065e-75
Identity = 128/245 (52.24%), Postives = 165/245 (67.35%), Query Frame = 3
Query:    6 TLCYKVFEIDDVKAWKSVLLSVSSYALGLLMISKAPWYLLPLAWAWTGTAVTGFFVIGHDCAHKSFSKNKLLEDIVGTLAFLPLIYPYEPWRFKHDKHHAKTNMLNGDTAWHPVWKEEFDTSPFLRKAIIYGY-GPFRPWMSIAHWLIWHFDLSKFRPNEVKRVKISLACVFAFMAIGWPLIILKTGIAGWIKYWLMPWLGYHFWMSTFTMVHHTAPHIPFKSPNEWNAAQAQLNGTVHCDYPKW 737
            TL  + FE    KAW SVL+++ + A+G L I   PWY LP+ W WTGTA+TG FV+GHDC H+SF+K + + D+VG +AF PLIYP+  WR  HD HH  TN +  D AW P   E F  SP + +       GPF    SI HW + HF LS F   +  +VK+S+A VF F AI +P +I+ TG+ G++K+WLMPWL YHFWMSTFT+VHHT P I F+   +W+AA+AQLNGTVHCDYP+W
Sbjct:   32 TLPKECFEKKASKAWASVLITLGAIAVGYLGIIYLPWYCLPITWIWTGTALTGAFVVGHDCGHRSFAKKRWVNDLVGHIAFAPLIYPFHSWRLLHDHHHLHTNKIEVDNAWDPWSVEAFQASPAIVRLFYRAIRGPFWWTGSIFHWSLMHFKLSNFAQRDRNKVKLSIAVVFLFAAIAFPALIITTGVWGFVKFWLMPWLVYHFWMSTFTIVHHTIPEIRFRPAADWSAAEAQLNGTVHCDYPRW 276          
BLAST of CX295272 vs. ExPASy Swiss-Prot
Match: DESA_SPIPL (Fatty acid desaturase OS=Spirulina platensis GN=desA PE=3 SV=1)

HSP 1 Score: 255.758 bits (652), Expect = 1.820e-67
Identity = 118/247 (47.77%), Postives = 164/247 (66.40%), Query Frame = 3
Query:    6 TLCYKVFEIDDVKAWKSVLLSVSSYALGLLMISKAPWYLLPLAWAWTGTAVTGFFVIGHDCAHKSFSKNKLLEDIVGTLAFLPLIYPYEPWRFKHDKHHAKTNMLNGDTAWHPVWKEEF-DTSPFLRKAIIYGYGPFRPWM--SIAHWLIWHFDLSKFRPNEVKRVKISLACVFAFMAIGWPLIILKTGIAGWIKYWLMPWLGYHFWMSTFTMVHHTAPHIPFKSPNEWNAAQAQLNGTVHCDYPKW 737
            TL   VF  D  KAW +V+++V    LG L I+ APW+LLP+ W +TGTA+TGFFVIGHDC H+SFS+N  + D VG + FLP+IYP+  WR  H++HH  TN +  D AW P  KEE+ +   F++  + Y     R W   SI HW   HFD +KF   + ++VK S   V    AI +P +IL  G+ G++K+W++PWL +HFWMSTFT++HHT   IPF+ P +W+ A++QL+GTVHC+Y +W
Sbjct:   31 TLPSGVFVQDRYKAWMTVIINVVMVGLGWLGIAIAPWFLLPVVWVFTGTALTGFFVIGHDCGHRSFSRNVWVNDWVGHILFLPIIYPFHSWRIGHNQHHKYTNRMELDNAWQPWRKEEYQNAGKFMQ--VTYDLFRGRAWWIGSILHWASIHFDWTKFEGKQRQQVKFSSLLVIGAAAIAFPTMILTIGVWGFVKFWVIPWLVFHFWMSTFTLLHHTIADIPFREPEQWHEAESQLSGTVHCNYSRW 275          
BLAST of CX295272 vs. ExPASy Swiss-Prot
Match: FAD3C_SOYBN (Omega-3 fatty acid desaturase, chloroplastic OS=Glycine max GN=FAD7 PE=2 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 4.857e-20
Identity = 67/219 (30.59%), Postives = 101/219 (46.12%), Query Frame = 3
Query:  114 WYLLPLAWAWTGTAVTGFFVIGHDCAHKSFSKNKLLEDIVGTLAFLPLIYPYEPWRFKHDKHHAKTNMLNGDTAWHPVWKEEFDTSPFLRKAIIYGYGPFRPWMSIAHWLI--------WHFDLSK--FRPNEVKRVKISLACVFAFMA--IGWPLIILKTGIAGWIKYWLMPWLGYHFWMSTFTMVHHTA--PHIPFKSPNEWNAAQAQLNGTVHCDY 728
            W + PL WA  GT     FV+GHDC H SFS N  L  +VG L    ++ PY  WR  H  HH        D +WHP+ ++ F +   + + + +   PF P ++   +L          HFD S   F PNE K V  S AC  A +   +G   ++   G    +K + +P++ +  W+   T +HH      +P+    EW+  +  L  T+  DY
Sbjct:  149 WLVWPLYWAAQGTMFWALFVLGHDCGHGSFSNNSKLNSVVGHLLHSSILVPYHGWRISHRTHHQHHGHAENDESWHPLPEKLFRSLDTVTRMLRF-TAPF-PLLAFPVYLFSRSPGKTGSHFDPSSDLFVPNERKDVITSTACWAAMLGLLVGLGFVM---GPIQLLKLYGVPYVIFVMWLDLVTYLHHHGHEDKLPWYRGKEWSYLRGGLT-TLDRDY 361          
BLAST of CX295272 vs. ExPASy Swiss-Prot
Match: FAD3E_ARATH (Omega-3 fatty acid desaturase, endoplasmic reticulum OS=Arabidopsis thaliana GN=FAD3 PE=2 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 1.846e-19
Identity = 70/262 (26.72%), Postives = 112/262 (42.75%), Query Frame = 3
Query:   24 FEIDDVKA------WKSVLLSVSSY---------ALGLLMISKAPWYLLPLAWAWTGTAVTGFFVIGHDCAHKSFSKNKLLEDIVGTLAFLPLIYPYEPWRFKHDKHHAKTNMLNGDTAWHPVWKEEFDTSPFLRKAIIYGYGPFRPWMSIAHWLIW--------HFD--LSKFRPNEVKRVKISLACVFAFMAIGWPLIILKTGIAGWIKYWLMPWLGYHFWMSTFTMVHHTA--PHIPFKSPNEWNAAQAQLNGTVHCDY 728
            F+I D++A      W    L   SY         AL +  +    W+L PL WA  GT     FV+GHDC H SFS   LL  +VG +    ++ PY  WR  H  HH     +  D +W P+ +  +   P   + + Y      P ++   +L +        HF+   S F P+E K +  S  C ++ M +    +    G    +K + +P++ +  W+   T +HH      +P+    EW+  +  L  T+  DY
Sbjct:   34 FKIGDIRAAIPKHCWVKSPLRSMSYVVRDIIAVAALAIAAVYVDSWFLWPLYWAAQGTLFWAIFVLGHDCGHGSFSDIPLLNSVVGHILHSFILVPYHGWRISHRTHHQNHGHVENDESWVPLPERVYKKLPHSTRMLRYTVP--LPMLAYPLYLCYRSPGKEGSHFNPYSSLFAPSERKLIATSTTC-WSIMFVSLIALSFVFGPLAVLKVYGVPYIIFVMWLDAVTYLHHHGHDEKLPWYRGKEWSYLRGGLT-TIDRDY 291          
BLAST of CX295272 vs. ExPASy Swiss-Prot
Match: FAD3C_ARATH (Omega-3 fatty acid desaturase, chloroplastic OS=Arabidopsis thaliana GN=FAD7 PE=1 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 1.846e-19
Identity = 72/247 (29.15%), Postives = 106/247 (42.91%), Query Frame = 3
Query:   48 WKSVLLSVSSYALGLLMISKAP----WYLLPLAWAWTGTAVTGFFVIGHDCAHKSFSKNKLLEDIVGTLAFLPLIYPYEPWRFKHDKHHAKTNMLNGDTAWHPVWKEEFDTSP-------FLRKAIIYGYGPFRPWMSI-----AHWLIWHFDLSKFRPNEVKRVKISLACVFAFMAIGWPLIILK--TGIAGWIKYWLMPWLGYHFWMSTFTMVHHTA--PHIPFKSPNEWNAAQAQLNGTVHCDY 728
            WKS+   V   A+   + + A     W + PL W   GT     FV+GHDC H SFS +  L  +VG L    ++ PY  WR  H  HH     +  D +WHP+ ++ ++T         F    ++  Y PF  W        +H   +H D   F P E K V  S AC  A  A+   L+ L    G    +K + +P+     W+   T +HH      +P+    EW+  +  L  T+  DY
Sbjct:  115 WKSLSYVVRDVAIVFALAAGAAYLNNWIVWPLYWLAQGTMFWALFVLGHDCGHGSFSNDPKLNSVVGHLLHSSILVPYHGWRISHRTHHQNHGHVENDESWHPMSEKIYNTLDKPTRFFRFTLPLVMLAY-PFYLWARSPGKKGSH---YHPDSDLFLPKERKDVLTSTACWTAMAAL---LVCLNFTIGPIQMLKLYGIPYWINVMWLDFVTYLHHHGHEDKLPWYRGKEWSYLRGGLT-TLDRDY 353          
BLAST of CX295272 vs. ExPASy Swiss-Prot
Match: FAD3C_SESIN (Omega-3 fatty acid desaturase, chloroplastic OS=Sesamum indicum GN=FAD7 PE=2 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 5.371e-19
Identity = 64/219 (29.22%), Postives = 97/219 (44.29%), Query Frame = 3
Query:  114 WYLLPLAWAWTGTAVTGFFVIGHDCAHKSFSKNKLLEDIVGTLAFLPLIYPYEPWRFKHDKHHAKTNMLNGDTAWHPVWKEEFDTSPFLRKAIIYGYGPFRPWMSIAHWL----------IWHFDLSKFRPNEVKRVKISLACVFAFMA--IGWPLIILKTGIAGWIKYWLMPWLGYHFWMSTFTMVHHTA--PHIPFKSPNEWNAAQAQLNGTVHCDY 728
            W + PL W    T     FV+GHDC H SFS +  L  +VG +    ++ PY  WR  H  HH     +  D +WHP+ ++ +       K + +   PF P ++   +L           +H D   F PNE K V  S  C  A +A  +G   +I   G    +K + +P+LG   W+   T +HH      +P+    EW+  +  L  T+  DY
Sbjct:  145 WVVWPLYWFAQSTMFWALFVLGHDCGHGSFSNDPKLNSVVGHILHSSILVPYHGWRISHRTHHQNHGHVENDESWHPLSEKIYKNLDTATKKLRFTL-PF-PLLAYPIYLWSRSPGKQGSHFHPDSDLFVPNEKKDVITSTVCWTAMLALLVGLSFVI---GPVQLLKLYGIPYLGNVMWLDLVTYLHHHGHEDKLPWYRGKEWSYLRGGLT-TLDRDY 357          
The following BLAST results are available for this feature:
BLAST of CX295272 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 24
Match NameE-valueIdentityDescription
FAD6C_SOYBN4.253e-13386.67Omega-6 fatty acid desaturase, chloroplastic OS=Gl... [more]
FAD6C_BRANA6.790e-13184.84Omega-6 fatty acid desaturase, chloroplastic OS=Br... [more]
FAD6C_ARATH1.325e-12681.56Omega-6 fatty acid desaturase, chloroplastic OS=Ar... [more]
FAD6C_SPIOL3.734e-12180.00Omega-6 fatty acid desaturase, chloroplastic OS=Sp... [more]
DESA_SYNY31.065e-7552.24Fatty acid desaturase OS=Synechocystis sp. (strain... [more]
DESA_SPIPL1.820e-6747.77Fatty acid desaturase OS=Spirulina platensis GN=de... [more]
FAD3C_SOYBN4.857e-2030.59Omega-3 fatty acid desaturase, chloroplastic OS=Gl... [more]
FAD3E_ARATH1.846e-1926.72Omega-3 fatty acid desaturase, endoplasmic reticul... [more]
FAD3C_ARATH1.846e-1929.15Omega-3 fatty acid desaturase, chloroplastic OS=Ar... [more]
FAD3C_SESIN5.371e-1929.22Omega-3 fatty acid desaturase, chloroplastic OS=Se... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC05070E02SK PhIFruit1 Citrus clementina cDNA clone C05070E02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX295272 ID=CX295272; Name=CX295272; organism=Citrus clementina; type=EST; length=738bp
GTTTCACTTTGTGTTATAAGGTATTTGAGATTGATGATGTGAAAGCATGG
AAGTCTGTTTTATTATCCGTCAGTTCATATGCGTTGGGGCTTCTCATGAT
CTCAAAGGCCCCATGGTATTTGCTTCCTTTGGCTTGGGCATGGACAGGGA
CTGCGGTCACAGGGTTCTTTGTTATAGGCCATGATTGTGCCCACAAATCA
TTTTCAAAGAACAAGTTACTGGAAGACATCGTGGGAACCCTGGCCTTTCT
GCCACTGATATACCCATATGAACCCTGGCGGTTTAAGCACGACAAGCATC
ATGCCAAAACAAACATGCTGAACGGAGATACAGCTTGGCATCCTGTTTGG
AAAGAGGAGTTTGACACATCTCCCTTCTTGCGCAAAGCAATAATATATGG
ATATGGCCCTTTTCGACCTTGGATGTCAATAGCTCACTGGTTGATCTGGC
ACTTTGATTTGAGCAAGTTCAGGCCAAATGAAGTTAAAAGGGTGAAGATA
AGTTTGGCATGTGTTTTTGCATTTATGGCAATTGGATGGCCTCTAATTAT
ATTGAAGACAGGAATTGCGGGATGGATAAAGTACTGGTTGATGCCATGGT
TGGGCTATCACTTCTGGATGAGTACTTTCACTATGGTGCATCATACGGCT
CCTCACATTCCTTTCAAATCTCCGAATGAGTGGAATGCAGCCCAAGCCCA
GCTTAATGGGACAGTTCATTGTGATTACCCTAAATGGA
back to top