CX295272
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of CX295272 vs. ExPASy Swiss-Prot
Match: FAD6C_SOYBN (Omega-6 fatty acid desaturase, chloroplastic OS=Glycine max PE=2 SV=1) HSP 1 Score: 473.781 bits (1218), Expect = 4.253e-133 Identity = 208/240 (86.67%), Postives = 225/240 (93.75%), Query Frame = 3 Query: 18 KVFEIDDVKAWKSVLLSVSSYALGLLMISKAPWYLLPLAWAWTGTAVTGFFVIGHDCAHKSFSKNKLLEDIVGTLAFLPLIYPYEPWRFKHDKHHAKTNMLNGDTAWHPVWKEEFDTSPFLRKAIIYGYGPFRPWMSIAHWLIWHFDLSKFRPNEVKRVKISLACVFAFMAIGWPLIILKTGIAGWIKYWLMPWLGYHFWMSTFTMVHHTAPHIPFKSPNEWNAAQAQLNGTVHCDYPKW 737 +VFEIDDVKAWKSVL+SV+SYALGL MISKAPWYLLPLAW WTGTA+TGFFVIGHDCAH+SFS NKL+EDIVGTLAF+PLIYPYEPWRFKHD+HHAKTNML DTAWHPVWK+EF+++P LRKAIIYGYGPFR WMSIAHWL+WHFDL KFRP+EV RVKISLACVFAF+AIGWPLII KTGI GWIK+WLMPWLGYHFWMSTFTMVHHTAP+IPFK EWN AQAQLNGTVHCDYPKW Sbjct: 111 EVFEIDDVKAWKSVLISVTSYALGLFMISKAPWYLLPLAWVWTGTAITGFFVIGHDCAHRSFSSNKLVEDIVGTLAFMPLIYPYEPWRFKHDRHHAKTNMLREDTAWHPVWKDEFESTPLLRKAIIYGYGPFRCWMSIAHWLMWHFDLKKFRPSEVPRVKISLACVFAFIAIGWPLIIYKTGIMGWIKFWLMPWLGYHFWMSTFTMVHHTAPYIPFKYSEEWNRAQAQLNGTVHCDYPKW 350
BLAST of CX295272 vs. ExPASy Swiss-Prot
Match: FAD6C_BRANA (Omega-6 fatty acid desaturase, chloroplastic OS=Brassica napus PE=2 SV=1) HSP 1 Score: 466.463 bits (1199), Expect = 6.790e-131 Identity = 207/244 (84.84%), Postives = 225/244 (92.21%), Query Frame = 3 Query: 6 TLCYKVFEIDDVKAWKSVLLSVSSYALGLLMISKAPWYLLPLAWAWTGTAVTGFFVIGHDCAHKSFSKNKLLEDIVGTLAFLPLIYPYEPWRFKHDKHHAKTNMLNGDTAWHPVWKEEFDTSPFLRKAIIYGYGPFRPWMSIAHWLIWHFDLSKFRPNEVKRVKISLACVFAFMAIGWPLIILKTGIAGWIKYWLMPWLGYHFWMSTFTMVHHTAPHIPFKSPNEWNAAQAQLNGTVHCDYPKW 737 TL +VFEIDDVKAWKSVL+SV+SYALGL MI+KAPWYLLPLAWAWTGTAVTGFFVIGHDCAHKSFSKNKL+EDIVGTLAFLPL+YPYEPWRFKHD+HHAKTNML DTAW PV EEFD+SP LRKAII+GYGP RPW+SIAHW+ WHF+L KFRP+EV RVKISLACVFAFMA+GWPLII K G+ GW+K+WLMPWLGYHFWMSTFTMVHHTAPHIPFK +EWNAAQAQLNGTVHCDYP W Sbjct: 108 TLPKEVFEIDDVKAWKSVLISVTSYALGLFMIAKAPWYLLPLAWAWTGTAVTGFFVIGHDCAHKSFSKNKLVEDIVGTLAFLPLVYPYEPWRFKHDRHHAKTNMLVHDTAWQPVPPEEFDSSPVLRKAIIFGYGPIRPWLSIAHWVNWHFNLRKFRPSEVNRVKISLACVFAFMAVGWPLIIYKVGVLGWVKFWLMPWLGYHFWMSTFTMVHHTAPHIPFKPADEWNAAQAQLNGTVHCDYPSW 351
BLAST of CX295272 vs. ExPASy Swiss-Prot
Match: FAD6C_ARATH (Omega-6 fatty acid desaturase, chloroplastic OS=Arabidopsis thaliana GN=FAD6 PE=1 SV=2) HSP 1 Score: 452.21 bits (1162), Expect = 1.325e-126 Identity = 199/244 (81.56%), Postives = 222/244 (90.98%), Query Frame = 3 Query: 6 TLCYKVFEIDDVKAWKSVLLSVSSYALGLLMISKAPWYLLPLAWAWTGTAVTGFFVIGHDCAHKSFSKNKLLEDIVGTLAFLPLIYPYEPWRFKHDKHHAKTNMLNGDTAWHPVWKEEFDTSPFLRKAIIYGYGPFRPWMSIAHWLIWHFDLSKFRPNEVKRVKISLACVFAFMAIGWPLIILKTGIAGWIKYWLMPWLGYHFWMSTFTMVHHTAPHIPFKSPNEWNAAQAQLNGTVHCDYPKW 737 TL +VFEIDD+KA KSVL+SV+SY LGL MI+K+PWYLLPLAWAWTGTA+TGFFVIGHDCAHKSFSKNKL+EDIVGTLAFLPL+YPYEPWRFKHD+HHAKTNML DTAW PV EEF++SP +RKAII+GYGP RPW+SIAHW+ WHF+L KFR +EV RVKISLACVFAFMA+GWPLI+ K GI GW+K+WLMPWLGYHFWMSTFTMVHHTAPHIPFK +EWNAAQAQLNGTVHCDYP W Sbjct: 113 TLPKEVFEIDDLKALKSVLISVTSYTLGLFMIAKSPWYLLPLAWAWTGTAITGFFVIGHDCAHKSFSKNKLVEDIVGTLAFLPLVYPYEPWRFKHDRHHAKTNMLVHDTAWQPVPPEEFESSPVMRKAIIFGYGPIRPWLSIAHWVNWHFNLKKFRASEVNRVKISLACVFAFMAVGWPLIVYKVGILGWVKFWLMPWLGYHFWMSTFTMVHHTAPHIPFKPADEWNAAQAQLNGTVHCDYPSW 356
BLAST of CX295272 vs. ExPASy Swiss-Prot
Match: FAD6C_SPIOL (Omega-6 fatty acid desaturase, chloroplastic OS=Spinacia oleracea GN=FAD6 PE=1 SV=1) HSP 1 Score: 434.106 bits (1115), Expect = 3.734e-121 Identity = 192/240 (80.00%), Postives = 214/240 (89.17%), Query Frame = 3 Query: 18 KVFEIDDVKAWKSVLLSVSSYALGLLMISKAPWYLLPLAWAWTGTAVTGFFVIGHDCAHKSFSKNKLLEDIVGTLAFLPLIYPYEPWRFKHDKHHAKTNMLNGDTAWHPVWKEEFDTSPFLRKAIIYGYGPFRPWMSIAHWLIWHFDLSKFRPNEVKRVKISLACVFAFMAIGWPLIILKTGIAGWIKYWLMPWLGYHFWMSTFTMVHHTAPHIPFKSPNEWNAAQAQLNGTVHCDYPKW 737 +VFEI+D KAW +VL+SV+SYALG+ MI+KAPWYLLPLAWAWTGTA+TGFFVIGHDCAHKSFSKNKL+EDIVGTLAF+PLIYPYEPWRFKHD+HH KTNML DTAW P+ KE+ ++SP LRKA+IY YGP R WMSIAHWL HF+L FR +EVKR ISLA VFAFM IGWPLII KTGI GWIK+WLMPWLGYHFWMSTFT+VHHTAPHIPFKS EWNAAQAQL+GTVHCDYP+W Sbjct: 117 QVFEINDTKAWGTVLISVTSYALGIFMIAKAPWYLLPLAWAWTGTAITGFFVIGHDCAHKSFSKNKLVEDIVGTLAFMPLIYPYEPWRFKHDQHHTKTNMLREDTAWLPIMKEDIESSPGLRKALIYAYGPLRTWMSIAHWLKVHFNLKDFRQSEVKRATISLAAVFAFMVIGWPLIIYKTGIVGWIKFWLMPWLGYHFWMSTFTIVHHTAPHIPFKSSKEWNAAQAQLSGTVHCDYPRW 356
BLAST of CX295272 vs. ExPASy Swiss-Prot
Match: DESA_SYNY3 (Fatty acid desaturase OS=Synechocystis sp. (strain PCC 6803) GN=desA PE=3 SV=1) HSP 1 Score: 283.108 bits (723), Expect = 1.065e-75 Identity = 128/245 (52.24%), Postives = 165/245 (67.35%), Query Frame = 3 Query: 6 TLCYKVFEIDDVKAWKSVLLSVSSYALGLLMISKAPWYLLPLAWAWTGTAVTGFFVIGHDCAHKSFSKNKLLEDIVGTLAFLPLIYPYEPWRFKHDKHHAKTNMLNGDTAWHPVWKEEFDTSPFLRKAIIYGY-GPFRPWMSIAHWLIWHFDLSKFRPNEVKRVKISLACVFAFMAIGWPLIILKTGIAGWIKYWLMPWLGYHFWMSTFTMVHHTAPHIPFKSPNEWNAAQAQLNGTVHCDYPKW 737 TL + FE KAW SVL+++ + A+G L I PWY LP+ W WTGTA+TG FV+GHDC H+SF+K + + D+VG +AF PLIYP+ WR HD HH TN + D AW P E F SP + + GPF SI HW + HF LS F + +VK+S+A VF F AI +P +I+ TG+ G++K+WLMPWL YHFWMSTFT+VHHT P I F+ +W+AA+AQLNGTVHCDYP+W Sbjct: 32 TLPKECFEKKASKAWASVLITLGAIAVGYLGIIYLPWYCLPITWIWTGTALTGAFVVGHDCGHRSFAKKRWVNDLVGHIAFAPLIYPFHSWRLLHDHHHLHTNKIEVDNAWDPWSVEAFQASPAIVRLFYRAIRGPFWWTGSIFHWSLMHFKLSNFAQRDRNKVKLSIAVVFLFAAIAFPALIITTGVWGFVKFWLMPWLVYHFWMSTFTIVHHTIPEIRFRPAADWSAAEAQLNGTVHCDYPRW 276
BLAST of CX295272 vs. ExPASy Swiss-Prot
Match: DESA_SPIPL (Fatty acid desaturase OS=Spirulina platensis GN=desA PE=3 SV=1) HSP 1 Score: 255.758 bits (652), Expect = 1.820e-67 Identity = 118/247 (47.77%), Postives = 164/247 (66.40%), Query Frame = 3 Query: 6 TLCYKVFEIDDVKAWKSVLLSVSSYALGLLMISKAPWYLLPLAWAWTGTAVTGFFVIGHDCAHKSFSKNKLLEDIVGTLAFLPLIYPYEPWRFKHDKHHAKTNMLNGDTAWHPVWKEEF-DTSPFLRKAIIYGYGPFRPWM--SIAHWLIWHFDLSKFRPNEVKRVKISLACVFAFMAIGWPLIILKTGIAGWIKYWLMPWLGYHFWMSTFTMVHHTAPHIPFKSPNEWNAAQAQLNGTVHCDYPKW 737 TL VF D KAW +V+++V LG L I+ APW+LLP+ W +TGTA+TGFFVIGHDC H+SFS+N + D VG + FLP+IYP+ WR H++HH TN + D AW P KEE+ + F++ + Y R W SI HW HFD +KF + ++VK S V AI +P +IL G+ G++K+W++PWL +HFWMSTFT++HHT IPF+ P +W+ A++QL+GTVHC+Y +W Sbjct: 31 TLPSGVFVQDRYKAWMTVIINVVMVGLGWLGIAIAPWFLLPVVWVFTGTALTGFFVIGHDCGHRSFSRNVWVNDWVGHILFLPIIYPFHSWRIGHNQHHKYTNRMELDNAWQPWRKEEYQNAGKFMQ--VTYDLFRGRAWWIGSILHWASIHFDWTKFEGKQRQQVKFSSLLVIGAAAIAFPTMILTIGVWGFVKFWVIPWLVFHFWMSTFTLLHHTIADIPFREPEQWHEAESQLSGTVHCNYSRW 275
BLAST of CX295272 vs. ExPASy Swiss-Prot
Match: FAD3C_SOYBN (Omega-3 fatty acid desaturase, chloroplastic OS=Glycine max GN=FAD7 PE=2 SV=1) HSP 1 Score: 98.2117 bits (243), Expect = 4.857e-20 Identity = 67/219 (30.59%), Postives = 101/219 (46.12%), Query Frame = 3 Query: 114 WYLLPLAWAWTGTAVTGFFVIGHDCAHKSFSKNKLLEDIVGTLAFLPLIYPYEPWRFKHDKHHAKTNMLNGDTAWHPVWKEEFDTSPFLRKAIIYGYGPFRPWMSIAHWLI--------WHFDLSK--FRPNEVKRVKISLACVFAFMA--IGWPLIILKTGIAGWIKYWLMPWLGYHFWMSTFTMVHHTA--PHIPFKSPNEWNAAQAQLNGTVHCDY 728 W + PL WA GT FV+GHDC H SFS N L +VG L ++ PY WR H HH D +WHP+ ++ F + + + + + PF P ++ +L HFD S F PNE K V S AC A + +G ++ G +K + +P++ + W+ T +HH +P+ EW+ + L T+ DY Sbjct: 149 WLVWPLYWAAQGTMFWALFVLGHDCGHGSFSNNSKLNSVVGHLLHSSILVPYHGWRISHRTHHQHHGHAENDESWHPLPEKLFRSLDTVTRMLRF-TAPF-PLLAFPVYLFSRSPGKTGSHFDPSSDLFVPNERKDVITSTACWAAMLGLLVGLGFVM---GPIQLLKLYGVPYVIFVMWLDLVTYLHHHGHEDKLPWYRGKEWSYLRGGLT-TLDRDY 361
BLAST of CX295272 vs. ExPASy Swiss-Prot
Match: FAD3E_ARATH (Omega-3 fatty acid desaturase, endoplasmic reticulum OS=Arabidopsis thaliana GN=FAD3 PE=2 SV=1) HSP 1 Score: 96.2857 bits (238), Expect = 1.846e-19 Identity = 70/262 (26.72%), Postives = 112/262 (42.75%), Query Frame = 3 Query: 24 FEIDDVKA------WKSVLLSVSSY---------ALGLLMISKAPWYLLPLAWAWTGTAVTGFFVIGHDCAHKSFSKNKLLEDIVGTLAFLPLIYPYEPWRFKHDKHHAKTNMLNGDTAWHPVWKEEFDTSPFLRKAIIYGYGPFRPWMSIAHWLIW--------HFD--LSKFRPNEVKRVKISLACVFAFMAIGWPLIILKTGIAGWIKYWLMPWLGYHFWMSTFTMVHHTA--PHIPFKSPNEWNAAQAQLNGTVHCDY 728 F+I D++A W L SY AL + + W+L PL WA GT FV+GHDC H SFS LL +VG + ++ PY WR H HH + D +W P+ + + P + + Y P ++ +L + HF+ S F P+E K + S C ++ M + + G +K + +P++ + W+ T +HH +P+ EW+ + L T+ DY Sbjct: 34 FKIGDIRAAIPKHCWVKSPLRSMSYVVRDIIAVAALAIAAVYVDSWFLWPLYWAAQGTLFWAIFVLGHDCGHGSFSDIPLLNSVVGHILHSFILVPYHGWRISHRTHHQNHGHVENDESWVPLPERVYKKLPHSTRMLRYTVP--LPMLAYPLYLCYRSPGKEGSHFNPYSSLFAPSERKLIATSTTC-WSIMFVSLIALSFVFGPLAVLKVYGVPYIIFVMWLDAVTYLHHHGHDEKLPWYRGKEWSYLRGGLT-TIDRDY 291
BLAST of CX295272 vs. ExPASy Swiss-Prot
Match: FAD3C_ARATH (Omega-3 fatty acid desaturase, chloroplastic OS=Arabidopsis thaliana GN=FAD7 PE=1 SV=1) HSP 1 Score: 96.2857 bits (238), Expect = 1.846e-19 Identity = 72/247 (29.15%), Postives = 106/247 (42.91%), Query Frame = 3 Query: 48 WKSVLLSVSSYALGLLMISKAP----WYLLPLAWAWTGTAVTGFFVIGHDCAHKSFSKNKLLEDIVGTLAFLPLIYPYEPWRFKHDKHHAKTNMLNGDTAWHPVWKEEFDTSP-------FLRKAIIYGYGPFRPWMSI-----AHWLIWHFDLSKFRPNEVKRVKISLACVFAFMAIGWPLIILK--TGIAGWIKYWLMPWLGYHFWMSTFTMVHHTA--PHIPFKSPNEWNAAQAQLNGTVHCDY 728 WKS+ V A+ + + A W + PL W GT FV+GHDC H SFS + L +VG L ++ PY WR H HH + D +WHP+ ++ ++T F ++ Y PF W +H +H D F P E K V S AC A A+ L+ L G +K + +P+ W+ T +HH +P+ EW+ + L T+ DY Sbjct: 115 WKSLSYVVRDVAIVFALAAGAAYLNNWIVWPLYWLAQGTMFWALFVLGHDCGHGSFSNDPKLNSVVGHLLHSSILVPYHGWRISHRTHHQNHGHVENDESWHPMSEKIYNTLDKPTRFFRFTLPLVMLAY-PFYLWARSPGKKGSH---YHPDSDLFLPKERKDVLTSTACWTAMAAL---LVCLNFTIGPIQMLKLYGIPYWINVMWLDFVTYLHHHGHEDKLPWYRGKEWSYLRGGLT-TLDRDY 353
BLAST of CX295272 vs. ExPASy Swiss-Prot
Match: FAD3C_SESIN (Omega-3 fatty acid desaturase, chloroplastic OS=Sesamum indicum GN=FAD7 PE=2 SV=1) HSP 1 Score: 94.7449 bits (234), Expect = 5.371e-19 Identity = 64/219 (29.22%), Postives = 97/219 (44.29%), Query Frame = 3 Query: 114 WYLLPLAWAWTGTAVTGFFVIGHDCAHKSFSKNKLLEDIVGTLAFLPLIYPYEPWRFKHDKHHAKTNMLNGDTAWHPVWKEEFDTSPFLRKAIIYGYGPFRPWMSIAHWL----------IWHFDLSKFRPNEVKRVKISLACVFAFMA--IGWPLIILKTGIAGWIKYWLMPWLGYHFWMSTFTMVHHTA--PHIPFKSPNEWNAAQAQLNGTVHCDY 728 W + PL W T FV+GHDC H SFS + L +VG + ++ PY WR H HH + D +WHP+ ++ + K + + PF P ++ +L +H D F PNE K V S C A +A +G +I G +K + +P+LG W+ T +HH +P+ EW+ + L T+ DY Sbjct: 145 WVVWPLYWFAQSTMFWALFVLGHDCGHGSFSNDPKLNSVVGHILHSSILVPYHGWRISHRTHHQNHGHVENDESWHPLSEKIYKNLDTATKKLRFTL-PF-PLLAYPIYLWSRSPGKQGSHFHPDSDLFVPNEKKDVITSTVCWTAMLALLVGLSFVI---GPVQLLKLYGIPYLGNVMWLDLVTYLHHHGHEDKLPWYRGKEWSYLRGGLT-TLDRDY 357 The following BLAST results are available for this feature:
BLAST of CX295272 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 24
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Sequences
The
following sequences are available for this feature:
EST sequence >CX295272 ID=CX295272; Name=CX295272; organism=Citrus clementina; type=EST; length=738bpback to top |