CX295273

Overview
NameCX295273
Unique NameCX295273
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length674
Libraries
Library NameType
PhIFruit1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CX295273_ssr381 microsatellite CX295273_ssr381:381..392. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig10004 contig Ccv1_Contig10004:423..1096. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CX295273 vs. ExPASy Swiss-Prot
Match: OCS1_MAIZE (Ocs element-binding factor 1 OS=Zea mays GN=OBF1 PE=2 SV=2)

HSP 1 Score: 84.7297 bits (208), Expect = 4.729e-16
Identity = 40/80 (50.00%), Postives = 57/80 (71.25%), Query Frame = 2 
Query:  116 RKRKRMISNRESARRSRMRKQKHLDDLMAQVAQLRKDNHQIITSINIATQHYMNIESENSVLRAQLGELTHRLHSLNEII 355
            R+ KR +SNRESARRSR+RKQ+HLD+L+ +VA+L+ DN ++          Y  +E EN+VLRA+  EL  RL S+NE++
Sbjct:   26 RREKRRLSNRESARRSRLRKQQHLDELVQEVARLQADNARVAARARDIASQYTRVEQENTVLRARAAELGDRLRSVNEVL 105
The following BLAST results are available for this feature:
BLAST of CX295273 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
OCS1_MAIZE4.729e-1650.00Ocs element-binding factor 1 OS=Zea mays GN=OBF1 P... [more]
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Properties
Property NameValue
Genbank descriptionC05070E03SK PhIFruit1 Citrus clementina cDNA clone C05070E03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX295273 ID=CX295273; Name=CX295273; organism=Citrus clementina; type=EST; length=674bp
AAGAATTGCAGTAATTTAAATGGCTTCTTCAAGTGGGACATCATCAGGAG
GATCGTCATCATTGATGTTGCAAAACTCAGGGTCTGAGGAGAGTTTACAA
GCATTGATGGATCAAAGGAAGAGGAAGAGGATGATATCGAACAGAGAATC
AGCTAGAAGATCGAGGATGAGGAAGCAGAAGCATTTGGATGATCTGATGG
CTCAGGTTGCTCAGCTGAGGAAAGATAATCACCAGATCATCACCAGCATC
AACATCGCGACGCAACATTACATGAACATTGAGTCTGAGAACTCAGTGTT
GAGGGCCCAACTTGGTGAGCTCACTCACAGGCTGCACTCGCTCAATGAAA
TCATCAGCTTCTTGGATGCCAGCAACAACAACGACGACGACGAAAACAAT
GGCGGTGCTGCCGCTGCTATCTTTGAAGCCACAAGCATGATCAACGAGCC
TGCTTTCGATAATTTCATGAACCCACTGAATTTGTCATATCTGAATCAGC
CTATCATGGCTTCTGCAGACATGTTTCATCAGTACTGATGCTGACCTCCT
CTTTCTGAGAGATCAATCATGAGAGAGAATTGTTTGTCTTTATGTTTTTA
TTGTTGTTGCAGTGTAATTAGGCTTTTAATTAGCCTGTTGTAAGGAATAA
GGTATTTATTATTGGGGTTTCTTA
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