CX295315

Overview
NameCX295315
Unique NameCX295315
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length707
Libraries
Library NameType
PhIFruit1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX295315 vs. ExPASy Swiss-Prot
Match: RGLG2_ARATH (E3 ubiquitin-protein ligase RGLG2 OS=Arabidopsis thaliana GN=RGLG2 PE=1 SV=1)

HSP 1 Score: 180.644 bits (457), Expect = 6.960e-45
Identity = 96/195 (49.23%), Postives = 116/195 (59.49%), Query Frame = 2
Query:    2 IKSIVAASSYPLSIVLVGVGDGPWEDMQKFDDKIPAREFDNFQFVNFTAIMSKNATPSEKETAFALAALMEIPIQYKAAVELGIMGRTTGXXXXXXXXXXXXXXXXXXXXERQPSR------------------GSTPV-------AETQACPICLTNAKDLAFGCGHMTCRECGSRVSNCPICRQRITNRLRLF 511
            + +IV AS  PLSIVLVGVGDGPW+ M++FDD IPAR FDNFQFVNFT IM+KN   S KET FAL+ALMEIP QYKA +EL ++GR  G                      +PSR                   S+PV       ++ Q CPICL+N KD+AFGCGH TC ECG  +  CPICR  I  R++L+
Sbjct:  274 VDAIVQASKLPLSIVLVGVGDGPWDMMREFDDNIPARAFDNFQFVNFTEIMAKNKAQSLKETEFALSALMEIPQQYKATIELNLLGRRNGYIPERFPLPPPMRGGSSSYNSPKPSRLPSFKPSVPPHPTEGYHVRSSPVPPPTSSASDNQLCPICLSNPKDMAFGCGHQTCCECGPDLQMCPICRAPIQTRIKLY 468          
BLAST of CX295315 vs. ExPASy Swiss-Prot
Match: RGLG1_ARATH (E3 ubiquitin-protein ligase RGLG1 OS=Arabidopsis thaliana GN=RGLG1 PE=1 SV=1)

HSP 1 Score: 180.259 bits (456), Expect = 9.090e-45
Identity = 93/182 (51.10%), Postives = 112/182 (61.54%), Query Frame = 2
Query:    2 IKSIVAASSYPLSIVLVGVGDGPWEDMQKFDDKIPAREFDNFQFVNFTAIMSKNATPSEKETAFALAALMEIPIQYKAAVELGIMGRTTGXXXXXXXXXXXXXXXXXXXXERQP------------SRGSTPVAETQACPICLTNAKDLAFGCGHMTCRECGSRVSNCPICRQRITNRLRLF 511
            + +IV AS+ PLSIVLVGVGDGPW+ MQ+FDD IPAR FDNFQFVNFT IMSKN   S KET FAL+ALMEIP QYKA +EL ++G   G                     R P            S+  +   + Q CPICL+N K++AFGCGH TC ECG  +  CPICR  I  R++L+
Sbjct:  308 VDAIVKASTLPLSIVLVGVGDGPWDMMQEFDDNIPARAFDNFQFVNFTEIMSKNKDQSRKETEFALSALMEIPPQYKATIELNLLGVRNGNIPQRIPLPPPVQSGSSFSSSRIPNFEPSVPPYPFESKQMSSADDIQLCPICLSNPKNMAFGCGHQTCCECGPDLKVCPICRAPIQTRIKLY 489          
BLAST of CX295315 vs. ExPASy Swiss-Prot
Match: CPNA2_CAEEL (Copine domain-containing protein 2 OS=Caenorhabditis elegans GN=cpna-2 PE=2 SV=3)

HSP 1 Score: 96.6709 bits (239), Expect = 1.322e-19
Identity = 49/84 (58.33%), Postives = 59/84 (70.24%), Query Frame = 2
Query:    5 KSIVAASSYPLSIVLVGVGDGPWEDMQKFDDKIPAREFDNFQFVNFTAIMSKNATPSEKETAFALAALMEIPIQYKAAVELGIM 256
            K+I AAS YPLSI++VGVGDGPW  M +FDD IP R FDNF FV+F  +M         + +FAL ALMEIP QYKA  ELG++
Sbjct: 7462 KAIAAASHYPLSIIMVGVGDGPWNMMGRFDDNIPKRLFDNFHFVDFHKVM---FNAPNADASFALNALMEIPDQYKAIKELGLL 7542          
The following BLAST results are available for this feature:
BLAST of CX295315 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
RGLG2_ARATH6.960e-4549.23E3 ubiquitin-protein ligase RGLG2 OS=Arabidopsis t... [more]
RGLG1_ARATH9.090e-4551.10E3 ubiquitin-protein ligase RGLG1 OS=Arabidopsis t... [more]
CPNA2_CAEEL1.322e-1958.33Copine domain-containing protein 2 OS=Caenorhabdit... [more]
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Properties
Property NameValue
Genbank descriptionC05070H09SK PhIFruit1 Citrus clementina cDNA clone C05070H09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX295315 ID=CX295315; Name=CX295315; organism=Citrus clementina; type=EST; length=707bp
AATAAAGTCAATTGTTGCTGCAAGTTCATATCCACTTTCCATTGTGCTTG
TTGGAGTCGGTGATGGACCTTGGGAAGACATGCAGAAATTTGATGACAAG
ATCCCTGCACGTGAATTTGATAATTTTCAGTTTGTTAATTTTACCGCCAT
TATGTCAAAAAATGCAACTCCATCTGAGAAAGAAACAGCTTTTGCTCTTG
CCGCTCTCATGGAGATACCTATTCAATACAAAGCTGCAGTAGAACTTGGT
ATTATGGGACGCACGACAGGGAGAGCAAAGAAAATAGCTCCACGACCTCC
TCCAGCTCCTTATTCTCGCCGTGCCCTGCCAGAACGTCAACCAAGCCGTG
GTTCAACCCCTGTTGCGGAAACCCAGGCTTGCCCAATTTGCCTGACCAAT
GCAAAGGACTTGGCCTTTGGCTGTGGGCACATGACTTGTCGTGAATGTGG
ATCAAGAGTGTCAAACTGCCCTATATGCCGCCAAAGGATCACCAACCGTC
TCAGGCTGTTTGCTTGATGGCTGTCCGGCAGGAAGATCAAGTACAGAGTG
TTTTAGGAATGCATTTGCGTGTTTTTAGGGATGAAGTTGTACTAAAATGT
ACAGCATAGTTCTATGTTCATCACGCCGAACTCTTGTATTTGATGCTTTA
GCTTGCTTTACTGGCTAGAAGTTATATATTTTATGTTAGCAATTTTATAA
AGATCAC
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