CX295320

Overview
NameCX295320
Unique NameCX295320
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length701
Libraries
Library NameType
PhIFruit1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CX295320_ssr491 microsatellite CX295320_ssr491:491..502. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of CX295320 vs. ExPASy Swiss-Prot
Match: TI10A_ARATH (Protein TIFY 10A OS=Arabidopsis thaliana GN=TIFY10A PE=1 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 7.365e-23
Identity = 76/210 (36.19%), Postives = 106/210 (50.48%), Query Frame = 3
Query:  102 AQTCNLLSQYFKENGRF-------ASKPAANQGNESDSRQQATTMNLLPNLENSAEISKQDVKANDFFANIPSLAASN-------------VMNEAISGQGTSQMTIFYAGKVFVFSDFPAEKAKEIMALATK-----------------AASSNVIPDLNMASTFRNNNNDATPL-QFP---SASLQRFFDKRKERAAARAPYQVKNPS 608
            +QTC+ LSQY KENG F       A KP  N G   +SRQ  TTM+L P   ++ +   QDVK  + F   PS ++S+                       T+ +TIFYAG+V VF+DF AEKAKE++ LA+K                 A  +N +P     +T     +  TPL + P    ASL RF +KRK+R  ++APYQ+ +P+
Sbjct:   24 SQTCSRLSQYLKENGSFGDLSLGMACKPDVN-GTLGNSRQPTTTMSLFPCEASNMDSMVQDVKPTNLFPRQPSFSSSSSSLPKEDVLKMTQTTRSVKPESQTAPLTIFYAGQVIVFNDFSAEKAKEVINLASKGTANSLAKNQTDIRSNIATIANQVPHPRKTTTQEPIQSSPTPLTELPIARRASLHRFLEKRKDRVTSKAPYQLCDPA 232          
BLAST of CX295320 vs. ExPASy Swiss-Prot
Match: TI11B_ARATH (Protein TIFY 11B OS=Arabidopsis thaliana GN=TIFY11B PE=1 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 1.217e-17
Identity = 73/211 (34.60%), Postives = 96/211 (45.50%), Query Frame = 3
Query:  102 AQTCNLLSQYFKENGRF-------ASKPAANQGNESDSRQQATTMNLLPNLENSA----------EISKQDVKANDFFANIPSLAASNVMNEAISGQGTSQMTIFYAGKVFVFSDFPAEKAKEIMALATKA-----------------ASSNVIPDLNMASTFRNNNNDATPLQFP-------SASLQRFFDKRKERAAARAPYQVKNPSS 611
            +Q C+LLS+Y KE G F       A K       + D + Q    N++  +E S            I +      D    I     + V  E+    G SQ+TIF+ GKV VF++FP +KAKEIM +A +A                  S+ VIPDLN  ++  NN +  T  Q          ASL RFF KRK+RA ARAPYQV    S
Sbjct:   13 SQRCSLLSRYLKEKGSFGNINMGLARKSDLELAGKFDLKGQ---QNVIKKVETSETRPFKLIQKFSIGEASTSTEDKAIYIDLSEPAKVAPES----GNSQLTIFFGGKVMVFNEFPEDKAKEIMEVAKEANHVAVDSKNSQSHMNLDKSNVVIPDLNEPTSSGNNEDQETGQQHQVVERIARRASLHRFFAKRKDRAVARAPYQVNQHGS 216          
BLAST of CX295320 vs. ExPASy Swiss-Prot
Match: TI10B_ARATH (Protein TIFY 10B OS=Arabidopsis thaliana GN=TIFY10B PE=1 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 8.162e-14
Identity = 69/223 (30.94%), Postives = 98/223 (43.95%), Query Frame = 3
Query:  102 AQTCNLLSQYFKENGRFAS-------KPAANQGNESDSRQQATTMNLLP----NLENSAEISKQDVKANDFFANIPSLAASN----------VMNEAISGQGTSQ---MTIFYAGKVFVFSDFPAEKAKEIMALATKAASSNVIPDLNMASTFRNNNNDA------------------TPLQFP----------------SASLQRFFDKRKERAAARAPYQV 596
            +QTC  LS+Y KE G F         KP  N G+     +Q T MNL P     +++SA   ++D+K    F    S ++S+          +     S +  SQ   +TIFY G+V VF DF AEKAKE++ LA K ++ +        +   NNN+ A                  T  Q P                 ASL RF +KRK+R  ++APYQ+
Sbjct:   19 SQTCTRLSRYLKEKGSFGDLSLGMTCKPDVNGGS-----RQPTMMNLFPCEASGMDSSA--GQEDIKPKTMFPRQSSFSSSSSSGTKEDVQMIKETTKSVKPESQSAPLTIFYGGRVMVFDDFSAEKAKEVIDLANKGSAKS----FTCFTAEVNNNHSAYSQKEIASSPNPVCSPAKTAAQEPIQPNPASLACELPIARRASLHRFLEKRKDRITSKAPYQI 230          
BLAST of CX295320 vs. ExPASy Swiss-Prot
Match: TI11A_ARATH (Protein TIFY 11A OS=Arabidopsis thaliana GN=TIFY11A PE=1 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 2.375e-13
Identity = 67/197 (34.01%), Postives = 91/197 (46.19%), Query Frame = 3
Query:  111 CNLLSQYFKENGRFASKPAANQGNESDSRQQATTMNLLPNLENS---AEISKQDVKANDFFANIPSLAASNVMNEAISGQGTSQMTIFYAGKVFVFSDFPAEKAKEIMALATKA-------------------ASSNVIPDLNMASTFRNNNNDATPLQFPS-------------ASLQRFFDKRKERAAARAPYQV 596
            C+LLS+Y KE G F +        + DS          P  +N+   A  SK +   +            +V + + S  G+SQ+TIF+ GKV V+++FP +KAKEIM +A +A                    SS V+PDLN  +    +NN  T  Q                ASL RFF KRK+RA ARAPYQV
Sbjct:   22 CSLLSRYLKEKGSFGNIDLGLY-RKPDSSLALPGKFDPPGKQNAMHKAGHSKGEPSTSS------GGKVKDVADLSESQPGSSQLTIFFGGKVLVYNEFPVDKAKEIMEVAKQAKPVTEINIQTPINDENNNNKSSMVLPDLNEPT----DNNHLTKEQQQQQEQNQIVERIARRASLHRFFAKRKDRAVARAPYQV 207          
The following BLAST results are available for this feature:
BLAST of CX295320 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 4
Match NameE-valueIdentityDescription
TI10A_ARATH7.365e-2336.19Protein TIFY 10A OS=Arabidopsis thaliana GN=TIFY10... [more]
TI11B_ARATH1.217e-1734.60Protein TIFY 11B OS=Arabidopsis thaliana GN=TIFY11... [more]
TI10B_ARATH8.162e-1430.94Protein TIFY 10B OS=Arabidopsis thaliana GN=TIFY10... [more]
TI11A_ARATH2.375e-1334.01Protein TIFY 11A OS=Arabidopsis thaliana GN=TIFY11... [more]
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Properties
Property NameValue
Genbank descriptionC05071A02SK PhIFruit1 Citrus clementina cDNA clone C05071A02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX295320 ID=CX295320; Name=CX295320; organism=Citrus clementina; type=EST; length=701bp
GGCCTCGTGCCGAATTCGGCACGAGGGTTTATTTGTCTTCTCAATTCTTA
TTCCAAAAGGCTACAAGCATGTCAAGTTCGGGCCAGAAATCATCGAGCGT
TGCTCAAACATGCAACCTTTTGAGCCAGTACTTCAAGGAAAATGGAAGAT
TTGCTTCAAAACCTGCAGCTAATCAAGGTAATGAATCGGATTCAAGGCAG
CAAGCAACAACAATGAACTTGTTGCCAAACCTGGAAAATTCTGCTGAGAT
TTCAAAACAAGATGTAAAAGCCAATGATTTCTTTGCAAACATCCCAAGTT
TGGCCGCCTCCAATGTGATGAATGAAGCCATATCGGGGCAAGGAACGTCT
CAAATGACTATATTCTACGCTGGAAAAGTGTTTGTTTTCAGCGACTTCCC
TGCAGAAAAGGCAAAGGAAATCATGGCCTTAGCCACCAAAGCAGCAAGCT
CTAATGTTATTCCAGACTTGAATATGGCTTCCACTTTTCGCAACAACAAC
AATGATGCAACCCCACTTCAGTTCCCAAGTGCCTCTCTTCAACGTTTCTT
TGATAAAAGAAAAGAAAGGGCTGCAGCAAGAGCACCATACCAAGTAAAGA
ATCCTTCTTCAATGGCGGCTGCGCCTGCAAAGCCATAAGATCAAGGCAAG
TATCCAGGCCTGGAGCTTGAAGGTCAATCTTCAGACAGCTTGATCTGAAC
T
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