CX295321

Overview
NameCX295321
Unique NameCX295321
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length589
Libraries
Library NameType
PhIFruit1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX295321 vs. ExPASy Swiss-Prot
Match: CY11_SOLTU (Cytochrome c1-1, heme protein, mitochondrial OS=Solanum tuberosum GN=CYCL PE=2 SV=1)

HSP 1 Score: 158.688 bits (400), Expect = 1.990e-38
Identity = 78/84 (92.86%), Postives = 81/84 (96.43%), Query Frame = 1
Query:    4 IALPKMLIDGALEYEDGTPATEAQMGKDVVTFLSWAAEPEMEERKLMGFKWIFVLSLALLQAGYYRRLRWSVLKSRKLVLDVVN 255
            IA+PKML DGA+EYEDG PATEAQMGKDVV+FLSWAAEPEMEERKLMGFKWIFVLSLALLQA YYRRLRWSVLKSRKLVLDVVN
Sbjct:  237 IAMPKMLNDGAVEYEDGIPATEAQMGKDVVSFLSWAAEPEMEERKLMGFKWIFVLSLALLQAAYYRRLRWSVLKSRKLVLDVVN 320          
BLAST of CX295321 vs. ExPASy Swiss-Prot
Match: CY12_SOLTU (Cytochrome c1-2, heme protein, mitochondrial (Fragment) OS=Solanum tuberosum GN=CYCL PE=1 SV=1)

HSP 1 Score: 157.918 bits (398), Expect = 3.394e-38
Identity = 77/84 (91.67%), Postives = 81/84 (96.43%), Query Frame = 1
Query:    4 IALPKMLIDGALEYEDGTPATEAQMGKDVVTFLSWAAEPEMEERKLMGFKWIFVLSLALLQAGYYRRLRWSVLKSRKLVLDVVN 255
            IA+PKML DGA+EYEDG PATEAQMGKDVV+FL+WAAEPEMEERKLMGFKWIFVLSLALLQA YYRRLRWSVLKSRKLVLDVVN
Sbjct:  177 IAMPKMLNDGAVEYEDGVPATEAQMGKDVVSFLTWAAEPEMEERKLMGFKWIFVLSLALLQAAYYRRLRWSVLKSRKLVLDVVN 260          
BLAST of CX295321 vs. ExPASy Swiss-Prot
Match: CY1_NEUCR (Cytochrome c1, heme protein, mitochondrial OS=Neurospora crassa GN=cyt-1 PE=2 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 5.444e-20
Identity = 45/82 (54.88%), Postives = 62/82 (75.61%), Query Frame = 1
Query:    1 GIALPKMLIDGALEYEDGTPATEAQMGKDVVTFLSWAAEPEMEERKLMGFKWIFVLSLALLQAGYYRRLRWSVLKSRKLVLD 246
            GIA+ ++L DG ++YEDGTPA+ +QM KDVV FL+WAAEPEM++RK MG K + V S+    + Y +R +W+ LKSRK+V D
Sbjct:  231 GIAMARVLYDGLVDYEDGTPASTSQMAKDVVEFLNWAAEPEMDDRKRMGMKVLVVTSVLFALSVYVKRYKWAWLKSRKIVYD 312          
BLAST of CX295321 vs. ExPASy Swiss-Prot
Match: CY1_YEAST (Cytochrome c1, heme protein, mitochondrial OS=Saccharomyces cerevisiae GN=CTC1 PE=1 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 4.313e-17
Identity = 39/81 (48.15%), Postives = 58/81 (71.60%), Query Frame = 1
Query:    4 IALPKMLIDGALEYEDGTPATEAQMGKDVVTFLSWAAEPEMEERKLMGFKWIFVLSLALLQAGYYRRLRWSVLKSRKLVLD 246
            IA+ ++L D  +EYEDGTPAT +QM KDV TFL+W AEPE +ERK +G K + +LS   L + + ++ +W+ +K+RK V +
Sbjct:  223 IAMARVLFDDMVEYEDGTPATTSQMAKDVTTFLNWCAEPEHDERKRLGLKTVIILSSLYLLSIWVKKFKWAGIKTRKFVFN 303          
BLAST of CX295321 vs. ExPASy Swiss-Prot
Match: CY1_SCHPO (Cytochrome c1, heme protein, mitochondrial OS=Schizosaccharomyces pombe GN=cyt1 PE=2 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 5.634e-17
Identity = 40/78 (51.28%), Postives = 58/78 (74.36%), Query Frame = 1
Query:    4 IALPKMLIDGALEYEDGTPATEAQMGKDVVTFLSWAAEPEMEERKLMGFKWIFVLSLALLQAGYYRRLRWSVLKSRKL 237
            IA+ + L D A+E+EDGTPAT AQ  KDVV FL WA+EPE++ RK MGF+ I VL++    + +Y+R +W+ +K+RK+
Sbjct:  223 IAMARPLFDDAVEFEDGTPATTAQAAKDVVNFLHWASEPELDIRKKMGFQVITVLTILTALSMWYKRFKWTPIKNRKI 300          
BLAST of CX295321 vs. ExPASy Swiss-Prot
Match: CY1_KLULA (Cytochrome c1, heme protein, mitochondrial OS=Kluyveromyces lactis GN=CYT1 PE=3 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 5.634e-17
Identity = 40/81 (49.38%), Postives = 58/81 (71.60%), Query Frame = 1
Query:    4 IALPKMLIDGALEYEDGTPATEAQMGKDVVTFLSWAAEPEMEERKLMGFKWIFVLSLALLQAGYYRRLRWSVLKSRKLVLD 246
            IA+ ++L D  +EYEDGTPAT +QM KDV TFL W +EPE +ERK +G K + VLS   L + + ++ +W+ +KSRK+V +
Sbjct:  208 IAMGRVLFDDLVEYEDGTPATTSQMAKDVTTFLHWCSEPEHDERKRLGLKAMIVLSSLYLLSVWVKKFKWASIKSRKIVFN 288          
BLAST of CX295321 vs. ExPASy Swiss-Prot
Match: CY1_DICDI (Cytochrome c1, heme protein, mitochondrial OS=Dictyostelium discoideum GN=cyc1 PE=3 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 1.388e-15
Identity = 38/78 (48.72%), Postives = 56/78 (71.79%), Query Frame = 1
Query:    4 IALPKMLIDGALEYEDGTPATEAQMGKDVVTFLSWAAEPEMEERKLMGFKWIFVLSLALLQAGYYRRLRWSVLKSRKL 237
            IA+   L DG +EY+DGT  + +QM KDV TFL WA+EPE ++RK +G K +  +S+  L   Y++RL+WSV+K+RK+
Sbjct:  194 IAMAPPLADGMVEYDDGTDNSMSQMAKDVSTFLCWASEPEHDDRKKLGMKVLLGVSIIALPLFYWKRLKWSVIKTRKI 271          
BLAST of CX295321 vs. ExPASy Swiss-Prot
Match: CY1_MOUSE (Cytochrome c1, heme protein, mitochondrial OS=Mus musculus GN=Cyc1 PE=1 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 1.534e-14
Identity = 38/67 (56.72%), Postives = 48/67 (71.64%), Query Frame = 1
Query:   37 LEYEDGTPATEAQMGKDVVTFLSWAAEPEMEERKLMGFKWIFVLSLALLQAGYYRRLRWSVLKSRKL 237
            LEY+DGTPAT +Q+ KDV TFL WA+EPE + RK MG K + ++ L L      +R +WSVLKSRKL
Sbjct:  253 LEYDDGTPATMSQVAKDVATFLRWASEPEHDHRKRMGLKMLLMMGLLLPLTYAMKRHKWSVLKSRKL 319          
BLAST of CX295321 vs. ExPASy Swiss-Prot
Match: CY1_BOVIN (Cytochrome c1, heme protein, mitochondrial OS=Bos taurus GN=CYC1 PE=1 SV=2)

HSP 1 Score: 79.337 bits (194), Expect = 1.534e-14
Identity = 39/78 (50.00%), Postives = 52/78 (66.67%), Query Frame = 1
Query:    4 IALPKMLIDGALEYEDGTPATEAQMGKDVVTFLSWAAEPEMEERKLMGFKWIFVLSLALLQAGYYRRLRWSVLKSRKL 237
            I +   + +  LE++DGTPAT +Q+ KDV TFL WAAEPE + RK MG K + ++ L L      +R +WSVLKSRKL
Sbjct:  242 IGMAPPIYNEVLEFDDGTPATMSQVAKDVCTFLRWAAEPEHDHRKRMGLKMLLMMGLLLPLVYAMKRHKWSVLKSRKL 319          
BLAST of CX295321 vs. ExPASy Swiss-Prot
Match: CY1_HUMAN (Cytochrome c1, heme protein, mitochondrial OS=Homo sapiens GN=CYC1 PE=1 SV=2)

HSP 1 Score: 78.5666 bits (192), Expect = 2.617e-14
Identity = 38/78 (48.72%), Postives = 53/78 (67.95%), Query Frame = 1
Query:    4 IALPKMLIDGALEYEDGTPATEAQMGKDVVTFLSWAAEPEMEERKLMGFKWIFVLSLALLQAGYYRRLRWSVLKSRKL 237
            IA+   +    LE++DGTPAT +Q+ KDV TFL WA+EPE + RK MG K + +++L +      +R +WSVLKSRKL
Sbjct:  242 IAMAPPIYTDVLEFDDGTPATMSQIAKDVCTFLRWASEPEHDHRKRMGLKMLMMMALLVPLVYTIKRHKWSVLKSRKL 319          
The following BLAST results are available for this feature:
BLAST of CX295321 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 12
Match NameE-valueIdentityDescription
CY11_SOLTU1.990e-3892.86Cytochrome c1-1, heme protein, mitochondrial OS=So... [more]
CY12_SOLTU3.394e-3891.67Cytochrome c1-2, heme protein, mitochondrial (Frag... [more]
CY1_NEUCR5.444e-2054.88Cytochrome c1, heme protein, mitochondrial OS=Neur... [more]
CY1_YEAST4.313e-1748.15Cytochrome c1, heme protein, mitochondrial OS=Sacc... [more]
CY1_SCHPO5.634e-1751.28Cytochrome c1, heme protein, mitochondrial OS=Schi... [more]
CY1_KLULA5.634e-1749.38Cytochrome c1, heme protein, mitochondrial OS=Kluy... [more]
CY1_DICDI1.388e-1548.72Cytochrome c1, heme protein, mitochondrial OS=Dict... [more]
CY1_MOUSE1.534e-1456.72Cytochrome c1, heme protein, mitochondrial OS=Mus ... [more]
CY1_BOVIN1.534e-1450.00Cytochrome c1, heme protein, mitochondrial OS=Bos ... [more]
CY1_HUMAN2.617e-1448.72Cytochrome c1, heme protein, mitochondrial OS=Homo... [more]

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Properties
Property NameValue
Genbank descriptionC05071A03SK PhIFruit1 Citrus clementina cDNA clone C05071A03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX295321 ID=CX295321; Name=CX295321; organism=Citrus clementina; type=EST; length=589bp
GGAATTGCTCTGCCTAAAATGCTTATTGATGGTGCTTTAGAGTATGAAGA
TGGTACCCCTGCAACAGAAGCTCAGATGGGAAAAGATGTTGTGACATTTT
TATCGTGGGCTGCAGAACCGGAAATGGAAGAGAGGAAGCTGATGGGTTTT
AAATGGATATTCGTACTGTCATTGGCTTTACTTCAAGCTGGTTACTACCG
GCGCCTGAGGTGGTCAGTTCTCAAGTCCCGCAAGCTGGTCCTTGATGTCG
TCAACTAGCTTCCCTTCTGGTTTCTCTCTAGCCTTCTTGTTTCTGGAAAT
CAGAAATAATTGCTTGATCAGATGGTCTAGGTTTCTACTTCTTTTTTGGA
AATGGAGTGACCTGAAGAATCTTTTTTTCCCCAAGTTGTGAAGAAATAAG
CTACTCCATATACCGGATACATTATTTTTTGTTAGAGATTTCTTTTTGGG
TGCCATATTTTCCTTGCTGAATTATCACTTCTCATAATTTGTTATTTGTG
GGATTTGTAAATGCAATCCTTGAAACAGAAGGAAACAATGGTCGTTGGTC
AATGTACTTTACATCGGATAAAAGTCCTTTGACCTTATT
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