CX295332

Overview
NameCX295332
Unique NameCX295332
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length698
Libraries
Library NameType
PhIFruit1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CX295332_ssr264 microsatellite CX295332_ssr264:264..281. BLAST: Citrus ESTs to Prunus persica proteins V1
CX295332_ssr13 microsatellite CX295332_ssr13:13..24. BLAST: Citrus ESTs to Prunus persica proteins V1
CX295332_ssr45 microsatellite CX295332_ssr45:45..56. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig10227 contig Ccv1_Contig10227:37..735. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX295332 vs. ExPASy Swiss-Prot
Match: CML44_ARATH (Probable calcium-binding protein CML44 OS=Arabidopsis thaliana GN=CML44 PE=1 SV=2)

HSP 1 Score: 126.716 bits (317), Expect = 1.163e-28
Identity = 71/163 (43.56%), Postives = 100/163 (61.35%), Query Frame = 3
Query:   69 LTANDLQRIFEKLDRNGDGLVSLEELNWVLERIG-VHFTLEELEALVEKPSLCFDEFL-FFCDSIISXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLYKAFSVFDVNGDGFITSEELQSVLARLGLWDEKSSQDCRSMIYVYDTNSDGVLDFEEFKNMML 551
            +T NDL+R+F+ LD+N DGLV+L+EL W+L+++G    T +ELE +V K SL  DEFL F+ D+++                                 + +AF+VFDVNGDG+I++EEL+ VL RLG  +E  + DC  MI V+D N DG +DFEEFKNM+L
Sbjct:    6 ITTNDLRRMFKTLDKNQDGLVTLDELLWILDKLGWAEHTPDELELIVGKQSLDLDEFLRFYYDAVLDSKGSKKNIDVVADNDEA---------------IARAFNVFDVNGDGYISAEELRDVLERLGFEEEAKAWDCGRMIRVHDKNLDGFVDFEEFKNMIL 153          
BLAST of CX295332 vs. ExPASy Swiss-Prot
Match: CML3_ARATH (Calmodulin-like protein 3 OS=Arabidopsis thaliana GN=CML3 PE=2 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 3.176e-18
Identity = 55/156 (35.26%), Postives = 82/156 (52.56%), Query Frame = 3
Query:   81 DLQRIFEKLDRNGDGLVSLEELNWVLERIGVHFTLEELEALVEKPSLCFDEFLFFCDSIISXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLYKAFSVFDVNGDGFITSEELQSVLARLGLWDEKSSQDCRSMIYVYDTNSDGVLDFEEFKNMM 548
            +L RIF+  DRNGDG ++ +ELN  LE +G++   ++L  ++EK  L  D ++                                        + +AF+VFD N DGFIT EEL+SVLA LGL   ++ +DC+ MI   D + DG+++F+EFK MM
Sbjct:    5 ELARIFQMFDRNGDGKITKQELNDSLENLGIYIPDKDLVQMIEKIDLNGDGYV-------------------DIEEFGGLYQTIMEERDEEEDMREAFNVFDQNRDGFITVEELRSVLASLGLKQGRTLEDCKRMISKVDVDGDGMVNFKEFKQMM 141          
BLAST of CX295332 vs. ExPASy Swiss-Prot
Match: CML28_ORYSJ (Probable calcium-binding protein CML28 OS=Oryza sativa subsp. japonica GN=CML28 PE=2 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 3.511e-17
Identity = 55/166 (33.13%), Postives = 86/166 (51.81%), Query Frame = 3
Query:   69 LTANDLQRIFEKLDRNGDGLVSLEELNWVLERIGVHFTLEELEALVEKPSL----CFD--EFLFFCDSIISXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLYKAFSVFDVNGDGFITSEELQSVLARLGLWDEKSSQDCRSMIYVYDTNSDGVLDFEEFKNMM 548
            + + +L+++F+  D+NGDG ++ +EL    +  G+    +EL+A ++K       C D  EF     SI+                                 + +AF+VFD NGDGFIT +EL+SVL+ LGL   +++ DCR MI + D + DG +DF+EFK MM
Sbjct:    1 MDSTELRKVFKMFDKNGDGRITKKELGESFKNFGIFIPDDELDATMDKIDANGDGCVDVEEFGLLYRSILGDDAAGRAPRTAAAAIGGEGGAPDDEDEG----MREAFNVFDQNGDGFITVDELRSVLSSLGLKHGRTADDCRRMISMVDADGDGRVDFKEFKQMM 162          
BLAST of CX295332 vs. ExPASy Swiss-Prot
Match: CML7_ARATH (Calmodulin-like protein 7 OS=Arabidopsis thaliana GN=CML7 PE=2 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 6.621e-16
Identity = 52/162 (32.10%), Postives = 85/162 (52.47%), Query Frame = 3
Query:   81 DLQRIFEKLDRNGDGLVSLEELNWVLERIGVHFTLEELEALVEKPSL----C--FDEFLFFCDSIISXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLYKAFSVFDVNGDGFITSEELQSVLARLGLWDEKSSQDCRSMIYVYDTNSDGVLDFEEFKNMM 548
            +L+R+F+  D+NGDG ++ +EL+  L  +G++   +EL  ++EK  +    C   DEF     +I+                                 + +AF+VFD NGDGFIT +EL++VL+ LGL   K+  DC+ MI   D + DG ++++EF+ MM
Sbjct:    5 ELKRVFQMFDKNGDGTITGKELSETLRSLGIYIPDKELTQMIEKIDVNGDGCVDIDEFGELYKTIMDEEDEEEED------------------------MKEAFNVFDQNGDGFITVDELKAVLSSLGLKQGKTLDDCKKMIKKVDVDGDGRVNYKEFRQMM 142          
BLAST of CX295332 vs. ExPASy Swiss-Prot
Match: CML2_ARATH (Calmodulin-like protein 2 OS=Arabidopsis thaliana GN=CML2 PE=2 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 6.621e-16
Identity = 50/162 (30.86%), Postives = 79/162 (48.77%), Query Frame = 3
Query:   81 DLQRIFEKLDRNGDGLVSLEELNWVLERIGVHFTLEELEALVEKP------SLCFDEFLFFCDSIISXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLYKAFSVFDVNGDGFITSEELQSVLARLGLWDEKSSQDCRSMIYVYDTNSDGVLDFEEFKNMM 548
            +L R+F+  D+NGDG ++  EL    + +G+     E+  ++ K       ++  DEF      ++                                 + +AF VFD NGDGFIT EEL+SVLA +GL   ++ +DC+ MI   D + DG+++F+EFK MM
Sbjct:    5 ELSRVFQMFDKNGDGKIAKNELKDFFKSVGIMVPENEINEMIAKMDVNGDGAMDIDEFGSLYQEMVEEKEEEED-------------------------MREAFRVFDQNGDGFITDEELRSVLASMGLKQGRTLEDCKKMISKVDVDGDGMVNFKEFKQMM 141          
BLAST of CX295332 vs. ExPASy Swiss-Prot
Match: CML32_ORYSJ (Probable calcium-binding protein CML32 OS=Oryza sativa subsp. japonica GN=CML32 PE=2 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 1.631e-14
Identity = 59/171 (34.50%), Postives = 83/171 (48.54%), Query Frame = 3
Query:   69 LTANDLQRIFEKLDRNGDGLVSLEELNWVLERIGVHFTLEELEALVEK------PSLCFDEFLFFCDSIISXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLYKAFSVFDVNGDGFITSEELQSVLARLGLWDEKSSQDCRSMIYVYDTNSDGVLDFEEFKNMMLRSTV 563
            L A  L+R+F+  DRNGDG ++++EL   L+ +G+    + L A V          L F++F    D++                                  + +AF VFDV+GDGFI++ ELQ VL +LGL +  S    R MI   D NSDG +DF EFK+MM   TV
Sbjct:   30 LNAVRLRRVFDLFDRNGDGEITVDELAQALDALGLVADRDGLAATVSAYVPEGAAGLRFEDF----DAL---HRALGDALFGSLDGAAAAGEPGGGGGDEEEEMREAFKVFDVDGDGFISASELQEVLKKLGLPEAGSLATVREMICNVDRNSDGRVDFGEFKSMMQGITV 193          
BLAST of CX295332 vs. ExPASy Swiss-Prot
Match: CML25_ARATH (Probable calcium-binding protein CML25 OS=Arabidopsis thaliana GN=CML25 PE=2 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 6.197e-14
Identity = 52/156 (33.33%), Postives = 76/156 (48.72%), Query Frame = 3
Query:   81 DLQRIFEKLDRNGDGLVSLEELNWVLERIGVHFTLEELEALVEKPSLCFDEFLFFCDSIISXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLYKAFSVFDVNGDGFITSEELQSVLARLGLWDEKSSQDCRSMIYVYDTNSDGVLDFEEFKNMM 548
            +L+ +F+K D NGDG +S +EL  ++  +G     EELE  + +     D ++ F + +                                  L  AFSV+D++G+G I++EEL  VL  LG  DE S  +CR MI   D + DG +DFEEFK MM
Sbjct:   37 ELEAVFKKFDVNGDGKISSKELGAIMTSLGHEVPEEELEKAITEIDRKGDGYINFEEFV-------------------ELNTKGMDQNDVLENLKDAFSVYDIDGNGSISAEELHEVLRSLG--DECSIAECRKMIGGVDKDGDGTIDFEEFKIMM 171          
BLAST of CX295332 vs. ExPASy Swiss-Prot
Match: CML10_ORYSJ (Probable calcium-binding protein CML10 OS=Oryza sativa subsp. japonica GN=CML10 PE=2 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 1.994e-12
Identity = 51/162 (31.48%), Postives = 73/162 (45.06%), Query Frame = 3
Query:   63 APLTANDLQRIFEKLDRNGDGLVSLEELNWVLERIGVHFTLEELEALVEKPSLCFDEFLFFCDSIISXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLYKAFSVFDVNGDGFITSEELQSVLARLGLWDEKSSQDCRSMIYVYDTNSDGVLDFEEFKNMM 548
            AP    +++R+F K D NGDG +S  EL  + E +G   T +EL  ++ +     D F+   +                                    L  AF VFD +G+G I++ EL  VL  LG  ++ + Q CR MI   D N DG++ FEEFK MM
Sbjct:   34 APTPEEEMERVFRKFDANGDGRISRSELGALFESLGHAATDDELARMMAEADADGDGFISLDE------------------FAALNATASGDAAAVEEDLRHAFRVFDADGNGTISAAELARVLHGLG--EKATVQQCRRMIEGVDQNGDGLISFEEFKVMM 175          
BLAST of CX295332 vs. ExPASy Swiss-Prot
Match: CML23_ARATH (Probable calcium-binding protein CML23 OS=Arabidopsis thaliana GN=CML23 PE=2 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 2.604e-12
Identity = 44/157 (28.03%), Postives = 83/157 (52.87%), Query Frame = 3
Query:   81 DLQRIFEKLDRNGDGLVSLEELNWVLERIGVHFTLEELEALVEKPSLCFDEFLFFCDSIISXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLYKAFSVFDVNGDGFITSEELQSVLARLGLWDEKSSQDCRSMIYVYDTNSDGVLDFEEFKNMML 551
            D++++F++ D+N DG +S++EL  V+  +  + + EE +A++++  L  + F+   + +                                  L +AF ++D++ +G I++ EL SV+  LG  ++ S QDC+ MI   D++ DG +DFEEFK MM+
Sbjct:   15 DIKKVFQRFDKNNDGKISIDELKDVIGALSPNASQEETKAMMKEFDLDGNGFIDLDEFVA-----------------LFQISDQSSNNSAIRDLKEAFDLYDLDRNGRISANELHSVMKNLG--EKCSIQDCQRMINKVDSDGDGCVDFEEFKKMMM 152          
BLAST of CX295332 vs. ExPASy Swiss-Prot
Match: CML24_ARATH (Calcium-binding protein CML24 OS=Arabidopsis thaliana GN=CML24 PE=2 SV=2)

HSP 1 Score: 71.2478 bits (173), Expect = 5.801e-12
Identity = 43/157 (27.39%), Postives = 82/157 (52.23%), Query Frame = 3
Query:   78 NDLQRIFEKLDRNGDGLVSLEELNWVLERIGVHFTLEELEALVEKPSLCFDEFLFFCDSIISXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLYKAFSVFDVNGDGFITSEELQSVLARLGLWDEKSSQDCRSMIYVYDTNSDGVLDFEEFKNMM 548
            +D++++F++ D+NGDG +S++EL  V+  +    + EE   ++++  L  + F+   + +                                  L +AF ++D++G+G I+++EL SV+  LG  ++ S QDC+ MI   D + DG ++F+EFK MM
Sbjct:   16 DDIKKVFQRFDKNGDGKISVDELKEVIRALSPTASPEETVTMMKQFDLDGNGFIDLDEFVA---------------LFQIGIGGGGNNRNDVSDLKEAFELYDLDGNGRISAKELHSVMKNLG--EKCSVQDCKKMISKVDIDGDGCVNFDEFKKMM 155          
The following BLAST results are available for this feature:
BLAST of CX295332 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 13
Match NameE-valueIdentityDescription
CML44_ARATH1.163e-2843.56Probable calcium-binding protein CML44 OS=Arabidop... [more]
CML3_ARATH3.176e-1835.26Calmodulin-like protein 3 OS=Arabidopsis thaliana ... [more]
CML28_ORYSJ3.511e-1733.13Probable calcium-binding protein CML28 OS=Oryza sa... [more]
CML7_ARATH6.621e-1632.10Calmodulin-like protein 7 OS=Arabidopsis thaliana ... [more]
CML2_ARATH6.621e-1630.86Calmodulin-like protein 2 OS=Arabidopsis thaliana ... [more]
CML32_ORYSJ1.631e-1434.50Probable calcium-binding protein CML32 OS=Oryza sa... [more]
CML25_ARATH6.197e-1433.33Probable calcium-binding protein CML25 OS=Arabidop... [more]
CML10_ORYSJ1.994e-1231.48Probable calcium-binding protein CML10 OS=Oryza sa... [more]
CML23_ARATH2.604e-1228.03Probable calcium-binding protein CML23 OS=Arabidop... [more]
CML24_ARATH5.801e-1227.39Calcium-binding protein CML24 OS=Arabidopsis thali... [more]

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Properties
Property NameValue
Genbank descriptionC05071B02SK PhIFruit1 Citrus clementina cDNA clone C05071B02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX295332 ID=CX295332; Name=CX295332; organism=Citrus clementina; type=EST; length=698bp
CATCTCTGGATTGTTAGTTAGTTAATTAGCATTGTATATTATTGTCACTC
ACTCACAATATGGCTCCTCTTACCGCCAATGACTTGCAAAGAATTTTCGA
GAAGCTTGATCGAAATGGCGATGGCCTGGTGAGCTTGGAGGAACTCAACT
GGGTTCTTGAAAGAATTGGGGTACATTTTACCCTTGAAGAGCTTGAAGCC
CTAGTTGAAAAACCAAGCCTCTGCTTCGATGAATTCTTGTTCTTCTGTGA
TTCCATCATATCGAATAATAATAATAATAATCCCAATGCTGCTGCTGATG
CTTCCCAGAATGCTGATGAAGCAGCTGATGATGACAGCGGCGACGAAGAG
ATCAGTGATCTTTACAAAGCGTTCAGTGTGTTCGATGTGAATGGTGATGG
ATTCATTACAAGCGAAGAGCTTCAGAGTGTGTTGGCGAGACTCGGATTGT
GGGATGAGAAAAGCAGCCAAGATTGCAGAAGCATGATTTACGTGTATGAT
ACCAATTCTGATGGGGTTCTTGATTTTGAAGAATTCAAGAACATGATGCT
TCGTAGTACTGTTTCTTAATTCGTTATTAATTTCGTGCCTGTTAATCTTG
ACCTTGTTTTTTTTTTTTTTTATAATCTGTGAAATTATGTTGATTATATG
ATGGTCGTAATTTGTTAGACCCGAGATCAACATAATTAGCCGAGCTTA
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