CX295338

Overview
NameCX295338
Unique NameCX295338
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length691
Libraries
Library NameType
PhIFruit1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX295338 vs. ExPASy Swiss-Prot
Match: BGAL9_ARATH (Beta-galactosidase 9 OS=Arabidopsis thaliana GN=BGAL9 PE=2 SV=1)

HSP 1 Score: 218.779 bits (556), Expect = 2.193e-56
Identity = 100/154 (64.94%), Postives = 124/154 (80.52%), Query Frame = 3
Query:    3 VPRSWLQASNNLLVIFEETGGNPFEISVKLRSTRIVCEQVSESHYPPVRKWSNSYSVDGKLSINKMAPEMHLHCQDGYIISSIEFASYGTPQGRCQKFSRGNCHAPMSLSVVSEACQGKSSCSIGITNAVFGGDPCRGIVKTLAVEARCIPSSN 464
            VPRSWL+ S+NLLV+FEETGGNPF+ISVK  +  I+C QVSESHYPP+RKWS    ++G +SIN +APE+HLHC+DG++ISSIEFASYGTP+G C  FS G CHA  SLS+VSEAC+G++SC I ++N  F  DPC G +KTLAV +RC PS N
Sbjct:  728 VPRSWLKPSSNLLVLFEETGGNPFKISVKTVTAGILCGQVSESHYPPLRKWSTPDYINGTMSINSVAPEVHLHCEDGHVISSIEFASYGTPRGSCDGFSIGKCHASNSLSIVSEACKGRNSCFIEVSNTAFISDPCSGTLKTLAVMSRCSPSQN 881          
BLAST of CX295338 vs. ExPASy Swiss-Prot
Match: BGA15_ORYSJ (Beta-galactosidase 15 OS=Oryza sativa subsp. japonica GN=Os12g0429200 PE=2 SV=1)

HSP 1 Score: 182.956 bits (463), Expect = 1.333e-45
Identity = 83/155 (53.55%), Postives = 113/155 (72.90%), Query Frame = 3
Query:    3 VPRSWLQASNNLLVIFEETGGNPFEISVKLRSTRIVCEQVSESHYPPVRKWSNSYSVDGKLSINKMAPEMHLHCQDGYIISSIEFASYGTPQGRCQKFSRGNCHAPMSLSVVSEACQGKSSCSIGITNAVFGGDPCRGIVKTLAVEARCIPSSNT 467
            +PR WL+ S+NLLV+FEETGG+P  IS++    + VC ++SE++YPP+  WS+  S  G+ S+N   PE+ L C DG++IS I FASYGTP G C  FS+GNCHA  +L +V+EAC G + C+I ++N VF GDPCRG++K LAVEA+C P S T
Sbjct:  761 IPREWLKESDNLLVLFEETGGDPSLISLEAHYAKTVCSRISENYYPPLSAWSHLSS--GRASVNAATPELRLQCDDGHVISEITFASYGTPSGGCLNFSKGNCHASSTLDLVTEACVGNTKCAISVSNDVF-GDPCRGVLKDLAVEAKCSPPSTT 912          
BLAST of CX295338 vs. ExPASy Swiss-Prot
Match: BGAL3_ARATH (Beta-galactosidase 3 OS=Arabidopsis thaliana GN=BGAL3 PE=1 SV=1)

HSP 1 Score: 141.354 bits (355), Expect = 4.449e-33
Identity = 69/154 (44.81%), Postives = 96/154 (62.34%), Query Frame = 3
Query:    3 VPRSWLQASNNLLVIFEETGGNPFEISVKLRSTRIVCEQVSESHYPPVRKWSNSYSVDGKLSINKMAPEMHLHCQDGYIISSIEFASYGTPQGRCQKFSRGNCHAPMSLSVVSEACQGKSSCSIGITNAVFGGDPCRGIVKTLAVEARCIPSSN 464
            VPR+WL+ S NLLVIFEE GGNP  +S+  RS   VC +VSE H P ++ W       G+       P++HL C  G  I+SI+FAS+GTP G C  + +G CHA  S +++   C GK+ C++ I+N+ FG DPC  ++K L VEA C P ++
Sbjct:  701 VPRAWLKPSQNLLVIFEELGGNPSTVSLVKRSVSGVCAEVSEYH-PNIKNWQIESYGKGQTFHR---PKVHLKCSPGQAIASIKFASFGTPLGTCGSYQQGECHAATSYAILERKCVGKARCAVTISNSNFGKDPCPNVLKRLTVEAVCAPETS 850          
BLAST of CX295338 vs. ExPASy Swiss-Prot
Match: BGAL8_ARATH (Beta-galactosidase 8 OS=Arabidopsis thaliana GN=BGAL8 PE=2 SV=2)

HSP 1 Score: 138.658 bits (348), Expect = 2.884e-32
Identity = 70/151 (46.36%), Postives = 102/151 (67.55%), Query Frame = 3
Query:    3 VPRSWLQASNNLLVIFEETGGNPFEISVKLRSTRI-VCEQVSESHYPPVRKWSNSYSVDGKLSINKMAPEMHLHCQ-DGYIISSIEFASYGTPQGRCQKFSRGNCHAPMSLSVVSEACQGKSSCSIGITNAVFGGDPCRGIVKTLAVEARC 449
            VPRSWL+ S N+LV+FEE GG+P +IS   + T   +C  VS+SH PPV  W++   +  +   N+  P + L C     +I SI+FAS+GTP+G C  F++G+C++  SLS+V +AC G  SC++ ++  VF G+PCRG+VK+LAVEA C
Sbjct:  705 VPRSWLKPSGNILVLFEEMGGDPTQISFATKQTGSNLCLTVSQSHPPPVDTWTSDSKISNR---NRTRPVLSLKCPISTQVIFSIKFASFGTPKGTCGSFTQGHCNSSRSLSLVQKACIGLRSCNVEVSTRVF-GEPCRGVVKSLAVEASC 851          
BLAST of CX295338 vs. ExPASy Swiss-Prot
Match: BGAL_SOLLC (Beta-galactosidase OS=Solanum lycopersicum PE=1 SV=1)

HSP 1 Score: 138.272 bits (347), Expect = 3.766e-32
Identity = 70/149 (46.98%), Postives = 91/149 (61.07%), Query Frame = 3
Query:    3 VPRSWLQASNNLLVIFEETGGNPFEISVKLRSTRIVCEQVSESHYPPVRKWSNSYSVDGKLSINKMAPEMHLHCQDGYIISSIEFASYGTPQGRCQKFSRGNCHAPMSLSVVSEACQGKSSCSIGITNAVFGGDPCRGIVKTLAVEARC 449
            VPRSWL  + NLLV+FEE GG+P+ I++  R    VC  + E   P +  W     V GK     + P+ HL C  G  ISSI+FAS+GTP+G C  F +G+CHAP S     + C GK SCS+ +T   FGGDPCR ++K L+VEA C
Sbjct:  690 VPRSWLYPTGNLLVVFEEWGGDPYGITLVKREIGSVCADIYEWQ-PQLLNWQRL--VSGKFD-RPLRPKAHLKCAPGQKISSIKFASFGTPEGVCGNFQQGSCHAPRSYDAFKKNCVGKESCSVQVTPENFGGDPCRNVLKKLSVEAIC 834          
BLAST of CX295338 vs. ExPASy Swiss-Prot
Match: BGAL3_ORYSJ (Beta-galactosidase 3 OS=Oryza sativa subsp. japonica GN=Os01g0875500 PE=2 SV=1)

HSP 1 Score: 130.954 bits (328), Expect = 6.013e-30
Identity = 65/151 (43.05%), Postives = 91/151 (60.26%), Query Frame = 3
Query:    3 VPRSWLQASNNLLVIFEETGGNPFEISVKLRSTRIVCEQVSESHYPPV--RKWSNSYSVDGKLSINKMAPEMHLHCQDGYIISSIEFASYGTPQGRCQKFSRGNCHAPMSLSVVSEACQGKSSCSIGITNAVFGGDPCRGIVKTLAVEARC 449
            VPRSW   S N LVIFEE GG+P +I+   R+   VC  VSE HYP +    W  +   DG+      A ++ L C  G  ISS++F S+G P G C+ + +G+CH P S+SVV +AC   + C++ +++  FG D C G+ KTLA+EA C
Sbjct:  706 VPRSWFHPSGNTLVIFEEKGGDPTKITFSRRTVASVCSFVSE-HYPSIDLESWDRNTQNDGR-----DAAKVQLSCPKGKSISSVKFVSFGNPSGTCRSYQQGSCHHPNSISVVEKACLNMNGCTVSLSDEGFGEDLCPGVTKTLAIEADC 850          
BLAST of CX295338 vs. ExPASy Swiss-Prot
Match: BGAL7_ORYSJ (Beta-galactosidase 7 OS=Oryza sativa subsp. japonica GN=Os05g0428100 PE=2 SV=1)

HSP 1 Score: 126.716 bits (317), Expect = 1.134e-28
Identity = 68/149 (45.64%), Postives = 88/149 (59.06%), Query Frame = 3
Query:    3 VPRSWLQASNNLLVIFEETGGNPFEISVKLRSTRIVCEQVSESHYPPVRKWSNSYSVDGKLSINKMAPEMHLHCQDGYIISSIEFASYGTPQGRCQKFSRGNCHAPMSLSVVSEACQGKSSCSIGITNAVFGGDPCRGIVKTLAVEARC 449
            +PR +L   +NLLV+ EE GG+P +I+V   S   VC  V E   PP++         GK+      P++ + CQ G  ISSIEFASYG P G C+ F  G+CHA  S SVV ++C G+  CSI +  A FGGDPC GI K+L V A C
Sbjct:  639 IPRGFLTPKDNLLVLVEEMGGDPLQITVNTMSVTTVCGNVDEFSVPPLQS-------RGKV------PKVRIWCQGGNRISSIEFASYGNPVGDCRSFRIGSCHAESSESVVKQSCIGRRGCSIPVMAAKFGGDPCPGIQKSLLVVADC 774          
BLAST of CX295338 vs. ExPASy Swiss-Prot
Match: BGAL5_ORYSJ (Beta-galactosidase 5 OS=Oryza sativa subsp. japonica GN=Os03g0165400 PE=2 SV=1)

HSP 1 Score: 125.176 bits (313), Expect = 3.300e-28
Identity = 65/149 (43.62%), Postives = 90/149 (60.40%), Query Frame = 3
Query:    3 VPRSWLQASNNLLVIFEETGGNPFEISVKLRSTRIVCEQVSESHYPPVRKWSNSYSVDGKLSINKMAPEMHLHCQDGYIISSIEFASYGTPQGRCQKFSRGNCHAPMSLSVVSEACQGKSSCSIGITNAVFGGDPCRGIVKTLAVEARC 449
            VPRSWLQ + NLLV+FEE GG+  +I++  R+   VC  VSE H P ++ W      + +    K+    HL C  G  IS+I+FAS+GTP G C  F +G CH+  S SV+ + C G   C + I+ + FGGDPC  ++K +AVEA C
Sbjct:  694 VPRSWLQPTRNLLVVFEELGGDSSKIALAKRTVSGVCADVSEYH-PNIKNWQIESYGEPEFHTAKV----HLKCAPGQTISAIKFASFGTPLGTCGTFQQGECHSINSNSVLEKKCIGLQRCVVAISPSNFGGDPCPEVMKRVAVEAVC 837          
BLAST of CX295338 vs. ExPASy Swiss-Prot
Match: BGAL6_ORYSJ (Beta-galactosidase 6 OS=Oryza sativa subsp. japonica GN=Os03g0255100 PE=1 SV=2)

HSP 1 Score: 124.79 bits (312), Expect = 4.309e-28
Identity = 62/150 (41.33%), Postives = 92/150 (61.33%), Query Frame = 3
Query:    3 VPRSWLQASNNLLVIFEETGGNPFEISVKLRSTRIVCEQVSESHYPPVRKWSNSYSVDGKLSINKMAPEMHLHC-QDGYIISSIEFASYGTPQGRCQKFSRGNCHAPMSLSVVSEACQGKSSCSIGITNAVFGGDPCRGIVKTLAVEARC 449
            VPRS+LQ  +N LV+FE+ GG+P  IS   R T  +C  VSE H   +  W     +  + +     P + L C ++G +IS+I+FAS+GTP G C  ++ G C +  +L+VV EAC G ++CS+ +++  F GDPC G+ K+L VEA C
Sbjct:  714 VPRSFLQPGSNDLVLFEQFGGDPSMISFTTRQTSSICAHVSEMHPAQIDSW-----ISPQQTSQTQGPALRLECPREGQVISNIKFASFGTPSGTCGNYNHGECSSSQALAVVQEACVGMTNCSVPVSSNNF-GDPCSGVTKSLVVEAAC 857          
BLAST of CX295338 vs. ExPASy Swiss-Prot
Match: BGAL2_ORYSJ (Beta-galactosidase 2 OS=Oryza sativa subsp. japonica GN=Os01g0580200 PE=2 SV=1)

HSP 1 Score: 124.79 bits (312), Expect = 4.309e-28
Identity = 64/149 (42.95%), Postives = 83/149 (55.70%), Query Frame = 3
Query:    3 VPRSWLQASNNLLVIFEETGGNPFEISVKLRSTRIVCEQVSESHYPPVRKWSNSYSVDGKLSINKMAPEMHLHCQDGYIISSIEFASYGTPQGRCQKFSRGNCHAPMSLSVVSEACQGKSSCSIGITNAVFGGDPCRGIVKTLAVEARC 449
            VPRSWL  + NLLVIFEE GG+P  IS+  RS   VC  VSE   P ++ W        K+         HL C +G  I+ I+FAS+GTPQG C  ++ G CHA  S  +  + C G+  C + +   +FGGDPC G +K   VEA C
Sbjct:  688 VPRSWLSPTGNLLVIFEEWGGDPTGISMVKRSIGSVCADVSEWQ-PSMKNWHTKDYEKAKV---------HLQCDNGQKITEIKFASFGTPQGSCGSYTEGGCHAHKSYDIFWKNCVGQERCGVSVVPEIFGGDPCPGTMKRAVVEAIC 826          
The following BLAST results are available for this feature:
BLAST of CX295338 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 21
Match NameE-valueIdentityDescription
BGAL9_ARATH2.193e-5664.94Beta-galactosidase 9 OS=Arabidopsis thaliana GN=BG... [more]
BGA15_ORYSJ1.333e-4553.55Beta-galactosidase 15 OS=Oryza sativa subsp. japon... [more]
BGAL3_ARATH4.449e-3344.81Beta-galactosidase 3 OS=Arabidopsis thaliana GN=BG... [more]
BGAL8_ARATH2.884e-3246.36Beta-galactosidase 8 OS=Arabidopsis thaliana GN=BG... [more]
BGAL_SOLLC3.766e-3246.98Beta-galactosidase OS=Solanum lycopersicum PE=1 SV... [more]
BGAL3_ORYSJ6.013e-3043.05Beta-galactosidase 3 OS=Oryza sativa subsp. japoni... [more]
BGAL7_ORYSJ1.134e-2845.64Beta-galactosidase 7 OS=Oryza sativa subsp. japoni... [more]
BGAL5_ORYSJ3.300e-2843.62Beta-galactosidase 5 OS=Oryza sativa subsp. japoni... [more]
BGAL6_ORYSJ4.309e-2841.33Beta-galactosidase 6 OS=Oryza sativa subsp. japoni... [more]
BGAL2_ORYSJ4.309e-2842.95Beta-galactosidase 2 OS=Oryza sativa subsp. japoni... [more]

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Properties
Property NameValue
Genbank descriptionC05071B08SK PhIFruit1 Citrus clementina cDNA clone C05071B08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX295338 ID=CX295338; Name=CX295338; organism=Citrus clementina; type=EST; length=691bp
GGGTGCCACGGTCATGGTTGCAAGCATCAAATAATTTACTCGTCATCTTT
GAGGAAACAGGAGGCAATCCGTTTGAGATTTCAGTCAAGTTGCGTTCAAC
TCGAATTGTCTGTGAACAAGTTTCAGAGTCCCACTACCCACCTGTTAGGA
AGTGGTCCAATTCATATTCTGTTGATGGAAAATTGTCGATAAATAAGATG
GCACCAGAAATGCATTTGCATTGTCAAGATGGATATATTATCTCTTCCAT
AGAATTTGCTAGCTATGGTACCCCTCAGGGTCGCTGCCAGAAATTTTCAA
GGGGCAACTGCCATGCGCCCATGTCATTATCCGTGGTGTCTGAGGCTTGC
CAAGGTAAAAGTAGCTGTTCCATAGGAATTACAAATGCTGTGTTTGGAGG
TGACCCATGCCGCGGCATTGTGAAGACATTAGCTGTTGAGGCAAGATGCA
TCCCCTCATCGAATACTGGTTTCTCTCAGATTTAAGTGACAAATTGCCGC
AAGATGTTCGCGGTTGATACCCTAAATCTATTACAAAAAGCAAACTGTTT
TCATTGCATTCTGTCCGCATTTCAGGCCGACAGGTCGCATGGGAAATCCA
GTTGTATAATTTATACATGTTGCAGCATCTGCTGTTGTATTCTACGGGGT
ACATAAACCTGTTATAACATTTGCACATGCCCCTTGCCCAA
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