CX295348

Overview
NameCX295348
Unique NameCX295348
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length730
Libraries
Library NameType
PhIFruit1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig638 contig Ccv1_Contig638:1..730. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX295348 vs. ExPASy Swiss-Prot
Match: ICR3_ARATH (Interactor of constitutive active ROPs 3 OS=Arabidopsis thaliana GN=ICR3 PE=2 SV=1)

HSP 1 Score: 135.576 bits (340), Expect = 2.704e-31
Identity = 72/109 (66.06%), Postives = 90/109 (82.57%), Query Frame = 1
Query:  190 MQTPKARSGSSEAPLKVSPRAVRQLNTTALESKSASSS-NQTCRTPKDKSPKVIDRRSPRSPVSERKRPSRISELESQVSRLQEDLKKAKNQLSSSESWKQQAQQDAED 513
            MQT KAR+GS + P KVSPRA R L   ALE +S+SS  + T RTPKDKSP V++RRSPRSPVSE+KRPSRI+ELE  VS+LQE+LKKAK+Q+S SE+ K+QA+Q+AE+
Sbjct:    1 MQTQKARNGSPDVPKKVSPRAARPLKIAALEPESSSSPISATNRTPKDKSPNVLNRRSPRSPVSEKKRPSRITELELLVSQLQEELKKAKDQISVSETSKKQAEQEAEE 109          
BLAST of CX295348 vs. ExPASy Swiss-Prot
Match: ICR2_ARATH (Interactor of constitutive active ROPs 2, chloroplastic OS=Arabidopsis thaliana GN=ICR2 PE=1 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 1.557e-30
Identity = 63/115 (54.78%), Postives = 80/115 (69.57%), Query Frame = 1
Query:  190 MQTPKARSGSSEAPLKVSP----RAVRQLNTTALESKSASSSNQTCRTPKDKSPKVI-DRRSPRSPVSE--RKRPSRISELESQVSRLQEDLKKAKNQLSSSESWKQQAQQDAED 513
            MQTPK R GS E P K SP    +  R+L T+  ES   SS N   RTPK +SPKV+ DRRSPR+PV+E  +KR  +  EL SQ+S+LQE+LKKAK QLS+SE+ K++AQ  AE+
Sbjct:    1 MQTPKPRPGSLEVPQKKSPASTPKTARKLKTS--ESDPVSSPNTKIRTPKTQSPKVVADRRSPRTPVNEIQKKRTGKTPELASQISQLQEELKKAKEQLSASEALKKEAQDQAEE 113          

HSP 2 Score: 47.7506 bits (112), Expect = 1.557e-30
Identity = 25/48 (52.08%), Postives = 36/48 (75.00%), Query Frame = 2
Query:  587 LRKLAQLSFKGLPRTDQSCQSELQAIQNQHSIDSAALASALNELQQLK 730
            LRKL+Q         D++ QSEL+A+Q QH++DSAAL+S +NE+Q+LK
Sbjct:  132 LRKLSQ-------ERDKAWQSELEAMQRQHAMDSAALSSTMNEVQKLK 172          
BLAST of CX295348 vs. ExPASy Swiss-Prot
Match: ICR5_ARATH (Interactor of constitutive active ROPs 5 OS=Arabidopsis thaliana GN=ICR5 PE=2 SV=2)

HSP 1 Score: 90.1225 bits (222), Expect = 1.321e-25
Identity = 54/111 (48.65%), Postives = 74/111 (66.67%), Query Frame = 1
Query:  190 MQTPKARSGSSEAPLKVSPRAVRQLNTTALESKSASSSNQTCRTPKDKSPKVI-DRRSPRSPVSE--RKRPSRISELESQVSRLQEDLKKAKNQLSSSESWKQQAQQDAED 513
            MQTPK+R GS E P K SP    ++    L+   A S  +T    K + PKV+ DRRS R P++E  +KR  RI ELES +S+LQE+LKKAK +L+ SE+ K++AQ++AED
Sbjct:    1 MQTPKSRPGSLELPQKKSPLPAPKV-VRRLKPSGAESDPKTKTISKTQIPKVVADRRSARIPLNEIQKKRTGRIPELESTISQLQEELKKAKEELNRSEALKREAQEEAED 110          

HSP 2 Score: 47.3654 bits (111), Expect = 1.321e-25
Identity = 25/48 (52.08%), Postives = 35/48 (72.92%), Query Frame = 2
Query:  587 LRKLAQLSFKGLPRTDQSCQSELQAIQNQHSIDSAALASALNELQQLK 730
            LRKL+Q         D++ QSEL+A+Q QH +DS AL+SA+NE+Q+LK
Sbjct:  129 LRKLSQ-------ERDKTWQSELEAMQRQHGMDSTALSSAINEVQKLK 169          
BLAST of CX295348 vs. ExPASy Swiss-Prot
Match: ICR4_ARATH (Interactor of constitutive active ROPs 4 OS=Arabidopsis thaliana GN=ICR4 PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 6.923e-11
Identity = 47/111 (42.34%), Postives = 69/111 (62.16%), Query Frame = 1
Query:  199 PKARSG--SSEAPLKVSPRAVRQLNTTALESKSASSSNQTCRTPKDKSPKV-IDRRSPRS------PVSERKRPSRISELESQVSRLQEDLKKAKNQLSSSESWKQQAQQD 504
            PK R G   SE P + SPR    L T+ L +  +S  +   R   D+SPK+ +DRRSPRS      P+S++K  SRIS LESQ+ + QE+L+  K QL+ +E+ K++AQ++
Sbjct:    2 PKPRLGIRGSELPQRQSPR----LRTSLLST--SSDPHHLSRPITDRSPKLGLDRRSPRSGGPHTDPLSQKKLGSRISGLESQLGQAQEELRLLKQQLAKAEAAKKRAQEE 106          
The following BLAST results are available for this feature:
BLAST of CX295348 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 4
Match NameE-valueIdentityDescription
ICR3_ARATH2.704e-3166.06Interactor of constitutive active ROPs 3 OS=Arabid... [more]
ICR2_ARATH1.557e-3054.78Interactor of constitutive active ROPs 2, chloropl... [more]
ICR5_ARATH1.321e-2548.65Interactor of constitutive active ROPs 5 OS=Arabid... [more]
ICR4_ARATH6.923e-1142.34Interactor of constitutive active ROPs 4 OS=Arabid... [more]
back to top
Properties
Property NameValue
Genbank descriptionC05071C06SK PhIFruit1 Citrus clementina cDNA clone C05071C06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX295348 ID=CX295348; Name=CX295348; organism=Citrus clementina; type=EST; length=730bp
ACGAGGCCAATCTGTCCTCCCCTCTTCTTCTCTCTGCTTCTTAAACTTAG
ATTCTCTCCATAAACAAAGCCCCACGTGCGAACTCAAGCTCTGGAGCTTA
GTGGGACAGGGAGCATTGAAGTGGTGAAACCAAAAAAAATTAACTCATTT
CTTTTGCACTTTGTACCTTGAAGCTTTGTTACATACATTATGCAGACTCC
AAAAGCAAGAAGTGGATCCTCAGAGGCACCCCTAAAAGTCTCCCCTCGAG
CAGTTCGACAACTCAATACAACTGCATTAGAGTCCAAGTCAGCATCGTCA
TCAAATCAAACTTGTAGAACACCAAAAGATAAAAGCCCTAAGGTCATTGA
TCGCAGATCACCCAGAAGCCCAGTGTCTGAGAGGAAGCGGCCCAGCAGAA
TATCTGAGTTGGAATCTCAGGTTTCTAGACTTCAGGAGGACTTGAAGAAG
GCGAAGAATCAGCTAAGTTCATCTGAATCATGGAAGCAGCAAGCTCAGCA
AGATGCAGAGGACTCCAAAAAACAACTACTGGCACTGTCCTCAAAGCTGC
AAGAATCCCAGAAGCAGCTTCAGGAACTCTCTGCTTCTGAGGAAGCTCGC
GCAGTTGAGCTTCAAAGGTCTCCCAAGAACAGATCAATCATGCCAATCTG
AGCTTCAGGCTATCCAGAATCAGCATTCAATTGACTCAGCAGCCTTGGCC
TCTGCCTTGAATGAGCTCCAGCAACTTAAG
back to top