CX295350

Overview
NameCX295350
Unique NameCX295350
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length691
Libraries
Library NameType
PhIFruit1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX295350 vs. ExPASy Swiss-Prot
Match: BADH_BETVU (Betaine aldehyde dehydrogenase, chloroplastic OS=Beta vulgaris PE=2 SV=1)

HSP 1 Score: 405.986 bits (1042), Expect = 9.684e-113
Identity = 187/229 (81.66%), Postives = 216/229 (94.32%), Query Frame = 3
Query:    3 PSELASVTCLELAEVCREVGLPPGILNIVTGLGPEAGAPLVSHPHVDKIAFTGSNATGIRIMAAAAPMVKPVSLELGGKSPIIVFEDVDLDKAVEWTIFGCFWTNGQICSATSRLLVHESIAAEFLERMVKWIKNIKISDPLEEGCRLGPVVSGGQYEKVLKFISNAKSEGATILCGGARPEHLKKGFFVEPTVITDIATSMQIWREEVFGPVLCVKAFSTEDEAIELA 689
            PSELAS+TCLE  EVC EVGLPPG+LNIVTGLGP+AGAPL +HP VDK+AFTGS+ATG ++MA+AA +VKPV+LELGGKSPIIVFEDVD+D+ VEWT+FGCFWTNGQICSATSRLLVHESIAAEF++R+VKW KNIKISDP EEGCRLGPV+S GQY+K++KFIS AKSEGATILCGG+RPEHLKKG+F+EPT+I+DI+TSMQIWREEVFGPVLCVK FS+EDEA+ELA
Sbjct:  186 PSELASITCLEFGEVCNEVGLPPGVLNIVTGLGPDAGAPLAAHPDVDKVAFTGSSATGSKVMASAAQLVKPVTLELGGKSPIIVFEDVDIDQVVEWTMFGCFWTNGQICSATSRLLVHESIAAEFIDRLVKWTKNIKISDPFEEGCRLGPVISKGQYDKIMKFISTAKSEGATILCGGSRPEHLKKGYFIEPTIISDISTSMQIWREEVFGPVLCVKTFSSEDEALELA 414          
BLAST of CX295350 vs. ExPASy Swiss-Prot
Match: BADH_AMAHP (Betaine aldehyde dehydrogenase, chloroplastic OS=Amaranthus hypochondriacus GN=BADH4 PE=3 SV=1)

HSP 1 Score: 405.216 bits (1040), Expect = 1.652e-112
Identity = 191/229 (83.41%), Postives = 212/229 (92.58%), Query Frame = 3
Query:    3 PSELASVTCLELAEVCREVGLPPGILNIVTGLGPEAGAPLVSHPHVDKIAFTGSNATGIRIMAAAAPMVKPVSLELGGKSPIIVFEDVDLDKAVEWTIFGCFWTNGQICSATSRLLVHESIAAEFLERMVKWIKNIKISDPLEEGCRLGPVVSGGQYEKVLKFISNAKSEGATILCGGARPEHLKKGFFVEPTVITDIATSMQIWREEVFGPVLCVKAFSTEDEAIELA 689
            PSELASVTCLELAEVCREVGLPPG+LNI+TGLGPEAG PL  HP VDK+AFTGS ATG ++M++AA +VKPV+LELGGKSPI++FEDVDLDKA EWT FGCFWTNGQICSATSRLLVHESIAAEFL+R+VKW KNIKISDP EEGCRLGPVVS  QYEKVLKFIS AKSEGATILCGG+RPEHLKKG++VEPT+I+D++TSMQIWREEVFGPVLC K F +EDEAIELA
Sbjct:  186 PSELASVTCLELAEVCREVGLPPGVLNILTGLGPEAGGPLACHPDVDKVAFTGSTATGSKVMSSAAQLVKPVTLELGGKSPIVIFEDVDLDKAAEWTAFGCFWTNGQICSATSRLLVHESIAAEFLDRLVKWCKNIKISDPFEEGCRLGPVVSKSQYEKVLKFISTAKSEGATILCGGSRPEHLKKGYYVEPTIISDVSTSMQIWREEVFGPVLCQKTFGSEDEAIELA 414          
BLAST of CX295350 vs. ExPASy Swiss-Prot
Match: BADH_SPIOL (Betaine aldehyde dehydrogenase, chloroplastic OS=Spinacia oleracea PE=1 SV=1)

HSP 1 Score: 402.134 bits (1032), Expect = 1.398e-111
Identity = 187/229 (81.66%), Postives = 215/229 (93.89%), Query Frame = 3
Query:    3 PSELASVTCLELAEVCREVGLPPGILNIVTGLGPEAGAPLVSHPHVDKIAFTGSNATGIRIMAAAAPMVKPVSLELGGKSPIIVFEDVDLDKAVEWTIFGCFWTNGQICSATSRLLVHESIAAEFLERMVKWIKNIKISDPLEEGCRLGPVVSGGQYEKVLKFISNAKSEGATILCGGARPEHLKKGFFVEPTVITDIATSMQIWREEVFGPVLCVKAFSTEDEAIELA 689
            PSELASVTCLE  EVC EVGLPPG+LNI+TGLGP+AGAPLVSHP VDKIAFTGS+ATG ++MA+AA +VKPV+LELGGKSPI+VFEDVD+DK VEWTIFGCFWTNGQICSATSRLLVHESIAAEF++++VKW KNIKISDP EEGCRLGPV+S GQY+K++KFIS AKSEGATIL GG+RPEHLKKG+++EPT++TDI+TSMQIW+EEVFGPVLCVK FS+EDEAI LA
Sbjct:  183 PSELASVTCLEFGEVCNEVGLPPGVLNILTGLGPDAGAPLVSHPDVDKIAFTGSSATGSKVMASAAQLVKPVTLELGGKSPIVVFEDVDIDKVVEWTIFGCFWTNGQICSATSRLLVHESIAAEFVDKLVKWTKNIKISDPFEEGCRLGPVISKGQYDKIMKFISTAKSEGATILYGGSRPEHLKKGYYIEPTIVTDISTSMQIWKEEVFGPVLCVKTFSSEDEAIALA 411          
BLAST of CX295350 vs. ExPASy Swiss-Prot
Match: BADH_ATRHO (Betaine aldehyde dehydrogenase, chloroplastic OS=Atriplex hortensis PE=2 SV=1)

HSP 1 Score: 400.593 bits (1028), Expect = 4.069e-111
Identity = 184/229 (80.35%), Postives = 214/229 (93.45%), Query Frame = 3
Query:    3 PSELASVTCLELAEVCREVGLPPGILNIVTGLGPEAGAPLVSHPHVDKIAFTGSNATGIRIMAAAAPMVKPVSLELGGKSPIIVFEDVDLDKAVEWTIFGCFWTNGQICSATSRLLVHESIAAEFLERMVKWIKNIKISDPLEEGCRLGPVVSGGQYEKVLKFISNAKSEGATILCGGARPEHLKKGFFVEPTVITDIATSMQIWREEVFGPVLCVKAFSTEDEAIELA 689
            PSELASVTCLE  EVC EVGLPPG+LNI+TGLGP+AGAP+VSHP +DK+AFTGS+ATG +IMA+AA +VKPV+LELGGKSP+I+FED+D++ AVEWT+FG FWTNGQICSATSRLLVHESIAAEF++RMVKW KNIKISDP EEGCRLGPV+S GQY+K++KFIS AKSEGATILCGG+RPEHLKKG+++EPT+ITDI TSMQIW+EEVFGPV+CVK F TEDEAIELA
Sbjct:  188 PSELASVTCLEFGEVCNEVGLPPGVLNILTGLGPDAGAPIVSHPDIDKVAFTGSSATGSKIMASAAQLVKPVTLELGGKSPVIMFEDIDIETAVEWTLFGVFWTNGQICSATSRLLVHESIAAEFVDRMVKWTKNIKISDPFEEGCRLGPVISKGQYDKIMKFISTAKSEGATILCGGSRPEHLKKGYYIEPTIITDITTSMQIWKEEVFGPVICVKTFKTEDEAIELA 416          
BLAST of CX295350 vs. ExPASy Swiss-Prot
Match: BADH1_ARATH (Betaine aldehyde dehydrogenase 1, chloroplastic OS=Arabidopsis thaliana GN=ALDH10A8 PE=2 SV=1)

HSP 1 Score: 400.208 bits (1027), Expect = 5.314e-111
Identity = 188/229 (82.10%), Postives = 213/229 (93.01%), Query Frame = 3
Query:    3 PSELASVTCLELAEVCREVGLPPGILNIVTGLGPEAGAPLVSHPHVDKIAFTGSNATGIRIMAAAAPMVKPVSLELGGKSPIIVFEDVDLDKAVEWTIFGCFWTNGQICSATSRLLVHESIAAEFLERMVKWIKNIKISDPLEEGCRLGPVVSGGQYEKVLKFISNAKSEGATILCGGARPEHLKKGFFVEPTVITDIATSMQIWREEVFGPVLCVKAFSTEDEAIELA 689
            PSELASVTCLELA++CREVGLPPG+LN++TG G EAGAPL SHP VDKIAFTGS ATG ++M AAA +VKPVS+ELGGKSP+IVF+DVDLDKA EW +FGCFWTNGQICSATSRLLVHESIA+EF+E++VKW KNIKISDP+EEGCRLGPVVS GQYEK+LKFIS AKSEGATIL GG+RPEHL+KGFF+EPT+ITD+ TSMQIWREEVFGPVLCVK F++EDEAIELA
Sbjct:  186 PSELASVTCLELADICREVGLPPGVLNVLTGFGSEAGAPLASHPGVDKIAFTGSFATGSKVMTAAAQLVKPVSMELGGKSPLIVFDDVDLDKAAEWALFGCFWTNGQICSATSRLLVHESIASEFIEKLVKWSKNIKISDPMEEGCRLGPVVSKGQYEKILKFISTAKSEGATILHGGSRPEHLEKGFFIEPTIITDVTTSMQIWREEVFGPVLCVKTFASEDEAIELA 414          
BLAST of CX295350 vs. ExPASy Swiss-Prot
Match: BADH2_ARATH (Betaine aldehyde dehydrogenase 2, mitochondrial OS=Arabidopsis thaliana GN=ALDH10A9 PE=2 SV=1)

HSP 1 Score: 397.512 bits (1020), Expect = 3.444e-110
Identity = 184/229 (80.35%), Postives = 210/229 (91.70%), Query Frame = 3
Query:    3 PSELASVTCLELAEVCREVGLPPGILNIVTGLGPEAGAPLVSHPHVDKIAFTGSNATGIRIMAAAAPMVKPVSLELGGKSPIIVFEDVDLDKAVEWTIFGCFWTNGQICSATSRLLVHESIAAEFLERMVKWIKNIKISDPLEEGCRLGPVVSGGQYEKVLKFISNAKSEGATILCGGARPEHLKKGFFVEPTVITDIATSMQIWREEVFGPVLCVKAFSTEDEAIELA 689
            PSELAS+TCLELA++CREVGLPPG+LNI+TGLG EAGAPL SHPHVDKI FTGS  TG  IM +AA +VKPVSLELGGKSPIIVF+DVD+DKAVEWT+FGCFWTNGQICSATSRLLVHE IA EFL+++VKW KNIKISDP EEGCRLGPVVS GQYE+VLKF+SNA++EGAT+LCGG RPEHLKKG+FVEP +++++ TSM+IWREEVFGP LCVK FSTEDEAI+LA
Sbjct:  186 PSELASLTCLELADICREVGLPPGVLNILTGLGTEAGAPLASHPHVDKIVFTGSTTTGSSIMTSAAKLVKPVSLELGGKSPIIVFDDVDIDKAVEWTMFGCFWTNGQICSATSRLLVHERIADEFLDKLVKWTKNIKISDPFEEGCRLGPVVSKGQYERVLKFVSNARNEGATVLCGGVRPEHLKKGYFVEPAIVSNVTTSMEIWREEVFGPALCVKTFSTEDEAIQLA 414          
BLAST of CX295350 vs. ExPASy Swiss-Prot
Match: BADH_ORYSJ (Betaine aldehyde dehydrogenase OS=Oryza sativa subsp. japonica GN=Os04g0464200 PE=2 SV=1)

HSP 1 Score: 368.237 bits (944), Expect = 2.238e-101
Identity = 173/229 (75.55%), Postives = 201/229 (87.77%), Query Frame = 3
Query:    3 PSELASVTCLELAEVCREVGLPPGILNIVTGLGPEAGAPLVSHPHVDKIAFTGSNATGIRIMAAAAPMVKPVSLELGGKSPIIVFEDVDLDKAVEWTIFGCFWTNGQICSATSRLLVHESIAAEFLERMVKWIKNIKISDPLEEGCRLGPVVSGGQYEKVLKFISNAKSEGATILCGGARPEHLKKGFFVEPTVITDIATSMQIWREEVFGPVLCVKAFSTEDEAIELA 689
            PSELAS+TCLEL  +C E+GLPPG+LNI+TGLG EAGAPL SHPHVDKIAFTGS  TG RIM  A+ MVKPVSLELGGKSP+IVF+DVD+DKAVEW +FGCF   GQ+CSATSRLL+HE IA  FL+R+V W K+IKISDPLEEGCRLG VVS GQY+K++KFIS A+ EGATIL GGARP+HLK+GFF+EPT+IT+++TSMQIWREEVFGPV+CVK F TE EA+ELA
Sbjct:  188 PSELASLTCLELGGICAEIGLPPGVLNIITGLGTEAGAPLASHPHVDKIAFTGSTETGKRIMITASQMVKPVSLELGGKSPLIVFDDVDIDKAVEWAMFGCFANAGQVCSATSRLLLHEKIAKRFLDRLVAWAKSIKISDPLEEGCRLGSVVSEGQYQKIMKFISTARCEGATILYGGARPQHLKRGFFIEPTIITNVSTSMQIWREEVFGPVICVKEFRTEREAVELA 416          
BLAST of CX295350 vs. ExPASy Swiss-Prot
Match: BADH_HORVU (Betaine aldehyde dehydrogenase OS=Hordeum vulgare PE=2 SV=1)

HSP 1 Score: 358.221 bits (918), Expect = 2.316e-98
Identity = 169/230 (73.48%), Postives = 198/230 (86.09%), Query Frame = 3
Query:    3 PSELASVTCLELAEVCREVGLPPGILNIVTGLGPEAGAPLVSHPHVDKIAFTGSNATGIRIMAAAAPMVKPVSLELGGKSPIIVFEDV-DLDKAVEWTIFGCFWTNGQICSATSRLLVHESIAAEFLERMVKWIKNIKISDPLEEGCRLGPVVSGGQYEKVLKFISNAKSEGATILCGGARPEHLKKGFFVEPTVITDIATSMQIWREEVFGPVLCVKAFSTEDEAIELA 689
            PSELAS+TCLEL  +C E+GLP G+LNI+TGLGP+AGAP+ SHPHVDKIAFTGS ATG  IM AAA MVKPVSLELGGKSP++ F+DV D+DKAVEW + GCF+  GQ+CSATSRLL+HE IA  FL+R+V+W KNIKISDPLEEGCRLG V+S GQYE++ KFIS A+SEGATIL GG RP+HL KGFF+EPT+ T ++TSMQIWREEVFGPV+CVK F TE EA+ELA
Sbjct:  187 PSELASLTCLELGAICEEIGLPSGVLNIITGLGPDAGAPIASHPHVDKIAFTGSTATGKTIMTAAAQMVKPVSLELGGKSPLVTFDDVADIDKAVEWPMLGCFFNGGQVCSATSRLLLHEKIAEPFLDRLVEWAKNIKISDPLEEGCRLGSVISKGQYEQIKKFISTARSEGATILHGGDRPKHLGKGFFIEPTINTGVSTSMQIWREEVFGPVICVKVFKTESEAVELA 416          
BLAST of CX295350 vs. ExPASy Swiss-Prot
Match: BADH_SCHPO (Probable betaine aldehyde dehydrogenase OS=Schizosaccharomyces pombe GN=meu8 PE=2 SV=1)

HSP 1 Score: 226.483 bits (576), Expect = 1.052e-58
Identity = 114/229 (49.78%), Postives = 155/229 (67.69%), Query Frame = 3
Query:    3 PSELASVTCLELAEVCREVGLPPGILNIVTGLGPEAGAPLVSHPHVDKIAFTGSNATGIRIMAAAAPMVKPVSLELGGKSPIIVFEDVDLDKAVEWTIFGCFWTNGQICSATSRLLVHESIAAEFLERMVKWIKNIKISDPLEEGCRLGPVVSGGQYEKVLKFISNAKSEGATILCGGARPEHLKKGFFVEPTVITDIATSMQIWREEVFGPVLCVKAFSTEDEAIELA 689
            PSELA  +CLE A +C+E GLP G+LN++ G G E+GA L  HP +  +AFTGS ATG +IM AAA  + P++LELGGKSP+I+ ED DL  A+    F  F+  G+ C+A SRL+VHES+A E L  +V     + I + L+    LGPVVS  Q+EK++ +I +A +EG   + GG  P   +KG+F+ PTV T++ T  +IWREE+FGPVL VK F T +EA+ELA
Sbjct:  197 PSELAPWSCLEFALICKEAGLPDGVLNVIIGSGKESGAALSCHPKIAYLAFTGSLATGKKIMHAAAENIVPLTLELGGKSPLIICEDADLSLAIPSAAFAIFFNQGEACTAASRLIVHESVADEVLGGLVSEANKLIIGNGLDPQVTLGPVVSKTQFEKIVSYIQSAINEGCKCVVGGL-PRSEQKGYFIPPTVFTNVQTHNKIWREEIFGPVLAVKTFHTNEEALELA 424          
BLAST of CX295350 vs. ExPASy Swiss-Prot
Match: BETB_BRUSU (Betaine aldehyde dehydrogenase OS=Brucella suis GN=betB PE=3 SV=1)

HSP 1 Score: 219.55 bits (558), Expect = 1.286e-56
Identity = 110/231 (47.62%), Postives = 154/231 (66.67%), Query Frame = 3
Query:    3 PSELASVTCLELAEVCREVGLPPGILNIVTGLGPEAGAPLVSHPHVDKIAFTGSNATGIRIMAAAAPMVKPVSLELGGKSPIIVFEDVDLDKAVEWTIFGCFWTNGQICSATSRLLVHESIAAEFLERMVKWIKNIKISDPLEEGCRLGPVVSGGQYEKVLKFISNAKSEGATILCGGARP--EHLKKGFFVEPTVITDIATSMQIWREEVFGPVLCVKAFSTEDEAIELA 689
            PSE   ++ L LAE  +E GLP G+ N+V G G + GA LV+H    K++ TGS  TG RIMA A   +K V++ELGGKSP+IVF+D DL+ A+   + G F++ GQ+CS  +R+ VH++I   F+ER+V+  + I+I DP +E  ++GP++S  Q +KVL +I   K+EGAT+ CGG  P  +   KGFF+EPTV  D+  +M I REE+FGPV+ V  FS EDE I  A
Sbjct:  176 PSENTPLSALALAEAYKEAGLPDGLFNVVQGYG-DVGAALVNHRLTAKVSLTGSVPTGRRIMAQAGEQLKHVTMELGGKSPLIVFDDADLESAIGGAMLGNFYSTGQVCSNGTRVFVHKNIRERFIERLVERTRKIRIGDPFDEATQMGPLISAAQRDKVLSYIKKGKAEGATLACGGGVPKLQGFDKGFFIEPTVFADVTDTMTIAREEIFGPVMSVLEFSDEDEVIARA 405          
The following BLAST results are available for this feature:
BLAST of CX295350 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
BADH_BETVU9.684e-11381.66Betaine aldehyde dehydrogenase, chloroplastic OS=B... [more]
BADH_AMAHP1.652e-11283.41Betaine aldehyde dehydrogenase, chloroplastic OS=A... [more]
BADH_SPIOL1.398e-11181.66Betaine aldehyde dehydrogenase, chloroplastic OS=S... [more]
BADH_ATRHO4.069e-11180.35Betaine aldehyde dehydrogenase, chloroplastic OS=A... [more]
BADH1_ARATH5.314e-11182.10Betaine aldehyde dehydrogenase 1, chloroplastic OS... [more]
BADH2_ARATH3.444e-11080.35Betaine aldehyde dehydrogenase 2, mitochondrial OS... [more]
BADH_ORYSJ2.238e-10175.55Betaine aldehyde dehydrogenase OS=Oryza sativa sub... [more]
BADH_HORVU2.316e-9873.48Betaine aldehyde dehydrogenase OS=Hordeum vulgare ... [more]
BADH_SCHPO1.052e-5849.78Probable betaine aldehyde dehydrogenase OS=Schizos... [more]
BETB_BRUSU1.286e-5647.62Betaine aldehyde dehydrogenase OS=Brucella suis GN... [more]

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Properties
Property NameValue
Genbank descriptionC05071C08SK PhIFruit1 Citrus clementina cDNA clone C05071C08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX295350 ID=CX295350; Name=CX295350; organism=Citrus clementina; type=EST; length=691bp
AGCCATCCGAATTGGCATCTGTGACCTGTTTGGAGCTTGCTGAAGTGTGT
AGAGAGGTGGGTCTTCCTCCCGGCATTCTTAATATTGTCACCGGATTGGG
TCCTGAAGCTGGGGCTCCTTTGGTATCCCATCCCCATGTCGACAAGATTG
CATTTACTGGAAGCAATGCAACAGGGATCAGGATAATGGCTGCTGCAGCT
CCGATGGTCAAGCCTGTTTCTTTGGAGCTGGGAGGAAAAAGTCCAATCAT
TGTGTTTGAGGATGTTGATCTAGATAAAGCGGTTGAGTGGACCATCTTTG
GTTGCTTTTGGACAAATGGTCAGATCTGTAGTGCAACATCTCGCCTTCTT
GTGCACGAAAGCATTGCAGCAGAATTTTTAGAGAGGATGGTGAAGTGGAT
CAAAAACATTAAGATTTCGGATCCACTGGAAGAAGGTTGCAGACTTGGTC
CTGTTGTTAGCGGAGGGCAGTATGAGAAAGTTTTGAAGTTCATTTCAAAT
GCCAAGAGCGAAGGTGCAACCATTTTGTGTGGTGGTGCTCGTCCTGAGCA
TCTGAAGAAGGGATTCTTTGTAGAACCAACCGTCATAACTGACATAGCGA
CATCAATGCAAATTTGGAGAGAAGAAGTTTTTGGACCTGTTTTGTGTGTC
AAGGCATTTTCCACAGAAGATGAAGCCATTGAATTGGCAAA
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