CX295361

Overview
NameCX295361
Unique NameCX295361
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length669
Libraries
Library NameType
PhIFruit1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig641 contig Ccv1_Contig641:1..669. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX295361 vs. ExPASy Swiss-Prot
Match: PSB4_ARATH (Proteasome subunit beta type-4 OS=Arabidopsis thaliana GN=PBG1 PE=1 SV=2)

HSP 1 Score: 270.396 bits (690), Expect = 5.967e-72
Identity = 126/150 (84.00%), Postives = 141/150 (94.00%), Query Frame = 2
Query:  203 QRTQLPYVTGTSVVALKYKDGILMAADMGGSYGSTIRYKSVERIKPIGKHSLLGASGEISDFQELLRNLDELILYDNMWDDGNSLGPKELHSYLTRVMYNRRNKFDPLWNSLVLGGVKNGQKYLGMVSMIGVNFEDSHVATGFGNHLAGP 652
            QRT  PYVTGTS+VA+KYKDG+LMA+DMGGSYGST+RYK++ER+K IGKHSLLGASGEISDFQE+LR LDEL L DNMWDDGNSLGPKE+H+YLTRVMYNRRNKF+PLWN+LVLGGVKNG+ YLGMVSMIGV+FED HVATGFGNHLA P
Sbjct:   22 QRTLYPYVTGTSIVAIKYKDGVLMASDMGGSYGSTLRYKNIERVKAIGKHSLLGASGEISDFQEILRYLDELTLNDNMWDDGNSLGPKEIHNYLTRVMYNRRNKFNPLWNTLVLGGVKNGKSYLGMVSMIGVSFEDDHVATGFGNHLARP 171          
BLAST of CX295361 vs. ExPASy Swiss-Prot
Match: PSB4_BOVIN (Proteasome subunit beta type-4 OS=Bos taurus GN=PSMB4 PE=1 SV=1)

HSP 1 Score: 163.31 bits (412), Expect = 1.027e-39
Identity = 74/152 (48.68%), Postives = 113/152 (74.34%), Query Frame = 2
Query:  197 PIQRTQLPYVTGTSVVALKYKDGILMAADMGGSYGSTIRYKSVERIKPIGKHSLLGASGEISDFQELLRNLDELILYDNMWDDGNSLGPKELHSYLTRVMYNRRNKFDPLWNSLVLGGVKNGQKYLGMVSMIGVNFEDSHVATGFGNHLAGP 652
            PI RTQ P VTGTSV+ LK++ G+++AADM GSYGS  R++++ RI  +   ++LGASG+ +DFQ L + L ++++ + +  DG+S  PK +HS+LTR MY+RR+K +PLWN++V+GG  +G+ +LG V M+GV +E   +ATG+G +LA P
Sbjct:   42 PITRTQNPMVTGTSVLGLKFEGGVVIAADMLGSYGSLARFRNISRIMRVNNSTMLGASGDYADFQYLKQVLGQMVIDEELLGDGHSYSPKAIHSWLTRAMYSRRSKMNPLWNTMVIGGYADGESFLGYVDMLGVAYEAPSLATGYGAYLAQP 193          
BLAST of CX295361 vs. ExPASy Swiss-Prot
Match: PSB4_XENLA (Proteasome subunit beta type-4 (Fragment) OS=Xenopus laevis GN=psmb4 PE=2 SV=2)

HSP 1 Score: 162.155 bits (409), Expect = 2.289e-39
Identity = 71/152 (46.71%), Postives = 114/152 (75.00%), Query Frame = 2
Query:  197 PIQRTQLPYVTGTSVVALKYKDGILMAADMGGSYGSTIRYKSVERIKPIGKHSLLGASGEISDFQELLRNLDELILYDNMWDDGNSLGPKELHSYLTRVMYNRRNKFDPLWNSLVLGGVKNGQKYLGMVSMIGVNFEDSHVATGFGNHLAGP 652
            P++ T  P VTGTSV+ +K+  G+++AADM GSYGS  R++++ RI  + ++++LGASG+ +D+Q L + +D++++ + +  DG++  PK +HS+LTRVMYNRR+K +PLWN++V+GG  NG+ +LG V  +GV +E   +ATGFG +LA P
Sbjct:   20 PVRHTLNPMVTGTSVLGVKFDGGVIIAADMLGSYGSLARFRNISRIMKVNENTILGASGDYADYQYLKQVIDQMVIDEELVGDGHNYSPKAIHSWLTRVMYNRRSKMNPLWNTVVIGGFYNGESFLGYVDKLGVAYEAPTIATGFGAYLAQP 171          
BLAST of CX295361 vs. ExPASy Swiss-Prot
Match: PSB4_HUMAN (Proteasome subunit beta type-4 OS=Homo sapiens GN=PSMB4 PE=1 SV=4)

HSP 1 Score: 160.999 bits (406), Expect = 5.099e-39
Identity = 72/152 (47.37%), Postives = 113/152 (74.34%), Query Frame = 2
Query:  197 PIQRTQLPYVTGTSVVALKYKDGILMAADMGGSYGSTIRYKSVERIKPIGKHSLLGASGEISDFQELLRNLDELILYDNMWDDGNSLGPKELHSYLTRVMYNRRNKFDPLWNSLVLGGVKNGQKYLGMVSMIGVNFEDSHVATGFGNHLAGP 652
            PI RTQ P VTGTSV+ +K++ G+++AADM GSYGS  R++++ RI  +   ++LGASG+ +DFQ L + L ++++ + +  DG+S  P+ +HS+LTR MY+RR+K +PLWN++V+GG  +G+ +LG V M+GV +E   +ATG+G +LA P
Sbjct:   42 PITRTQNPMVTGTSVLGVKFEGGVVIAADMLGSYGSLARFRNISRIMRVNNSTMLGASGDYADFQYLKQVLGQMVIDEELLGDGHSYSPRAIHSWLTRAMYSRRSKMNPLWNTMVIGGYADGESFLGYVDMLGVAYEAPSLATGYGAYLAQP 193          
BLAST of CX295361 vs. ExPASy Swiss-Prot
Match: PSB4_MOUSE (Proteasome subunit beta type-4 OS=Mus musculus GN=Psmb4 PE=1 SV=1)

HSP 1 Score: 159.844 bits (403), Expect = 1.136e-38
Identity = 72/152 (47.37%), Postives = 112/152 (73.68%), Query Frame = 2
Query:  197 PIQRTQLPYVTGTSVVALKYKDGILMAADMGGSYGSTIRYKSVERIKPIGKHSLLGASGEISDFQELLRNLDELILYDNMWDDGNSLGPKELHSYLTRVMYNRRNKFDPLWNSLVLGGVKNGQKYLGMVSMIGVNFEDSHVATGFGNHLAGP 652
            PI RTQ P VTGTSV+ +K+  G+++AADM GSYGS  R++++ RI  +   ++LGASG+ +DFQ L + L ++++ + +  DG+S  P+ +HS+LTR MY+RR+K +PLWN++V+GG  +G+ +LG V M+GV +E   +ATG+G +LA P
Sbjct:   42 PITRTQNPMVTGTSVLGVKFDGGVVIAADMLGSYGSLARFRNISRIMRVNDSTMLGASGDYADFQYLKQVLGQMVIDEELLGDGHSYSPRAIHSWLTRAMYSRRSKMNPLWNTMVIGGYADGESFLGYVDMLGVAYEAPSLATGYGAYLAQP 193          
BLAST of CX295361 vs. ExPASy Swiss-Prot
Match: PSB4_RAT (Proteasome subunit beta type-4 OS=Rattus norvegicus GN=Psmb4 PE=1 SV=2)

HSP 1 Score: 159.458 bits (402), Expect = 1.483e-38
Identity = 73/155 (47.10%), Postives = 112/155 (72.26%), Query Frame = 2
Query:  188 PNDPIQRTQLPYVTGTSVVALKYKDGILMAADMGGSYGSTIRYKSVERIKPIGKHSLLGASGEISDFQELLRNLDELILYDNMWDDGNSLGPKELHSYLTRVMYNRRNKFDPLWNSLVLGGVKNGQKYLGMVSMIGVNFEDSHVATGFGNHLAGP 652
            P  PI RTQ P VTGTSV+ +K+  G+++AADM GSYGS  R++++ RI  +   ++LGASG+ +DFQ L + L ++++ + ++ DG+S  P+ +HS+LTR MY+RR+K +PLWN+ V+GG   G+ +LG V M+GV +E   +ATG+G +LA P
Sbjct:   38 PARPITRTQNPMVTGTSVLGVKFDCGVVIAADMLGSYGSLARFRNISRIMRVNDSTMLGASGDYADFQYLKQVLGQMVIDEELFGDGHSYSPRAIHSWLTRAMYSRRSKMNPLWNTKVIGGYAGGESFLGYVDMLGVAYEAPSLATGYGAYLAQP 192          
BLAST of CX295361 vs. ExPASy Swiss-Prot
Match: PSB4_DICDI (Proteasome subunit beta type-4 OS=Dictyostelium discoideum GN=psmB4-1 PE=3 SV=1)

HSP 1 Score: 155.221 bits (391), Expect = 2.798e-37
Identity = 70/150 (46.67%), Postives = 108/150 (72.00%), Query Frame = 2
Query:  203 QRTQLPYVTGTSVVALKYKDGILMAADMGGSYGSTIRYKSVERIKPIGKHSLLGASGEISDFQELLRNLDELILYDNMWDDGNSLGPKELHSYLTRVMYNRRNKFDPLWNSLVLGGVKNGQKYLGMVSMIGVNFEDSHVATGFGNHLAGP 652
            Q+T  P VTGTSV+A+KY  G++M +DM  SYGS  R+ S ER+K  G ++++GASGE SDFQ +   L++L+  D+  DDG+ L  +E+ +YL RV+YN+RN+ +PLWN+LV+ G + G+ +LG V ++G  ++D  + TG+G+H+A P
Sbjct:   35 QKTLDPIVTGTSVIAIKYDKGVVMGSDMLLSYGSLARFNSTERMKKFGGYTIVGASGEYSDFQSITNTLNDLVTDDHCMDDGSKLSSEEIWNYLARVLYNQRNRGNPLWNTLVVMGYQGGKSFLGKVDLVGTCYKDDIITTGYGSHIALP 184          
BLAST of CX295361 vs. ExPASy Swiss-Prot
Match: PSB4_YEAST (Proteasome component PRE4 OS=Saccharomyces cerevisiae GN=PRE4 PE=1 SV=1)

HSP 1 Score: 145.206 bits (365), Expect = 2.895e-34
Identity = 71/157 (45.22%), Postives = 109/157 (69.43%), Query Frame = 2
Query:  197 PIQRTQLPYVTGTSVVALKYKDGILMAADMGGSYGSTIRYKSVERIKPIGKHSLLGASGEISDFQELLRNLDELI---LYDN-MWDDGNSLGPKELHSYLTRVMYNRRNKFDPLWNSLVLGGVK-NGQKYLGMVSMIGVNFEDSHVATGFGNHLAGP 652
            P+  TQ P VTGTSV+++KY +G+++AAD  GSYGS +R+  VER+ P+G ++++G SG+ISD Q + R L +L+    YDN + D   +L P  +  YL  VMY RR+K +PLWN++++ GV+ NG ++L  V+++GV +    +ATGFG H+A P
Sbjct:   30 PMVNTQQPIVTGTSVISMKYDNGVIIAADNLGSYGSLLRFNGVERLIPVGDNTVVGISGDISDMQHIERLLKDLVTENAYDNPLADAEEALEPSYIFEYLATVMYQRRSKMNPLWNAIIVAGVQSNGDQFLRYVNLLGVTYSSPTLATGFGAHMANP 186          
BLAST of CX295361 vs. ExPASy Swiss-Prot
Match: PSB4_SCHPO (Probable proteasome subunit beta type-4 OS=Schizosaccharomyces pombe GN=SPBC577.10 PE=2 SV=1)

HSP 1 Score: 145.206 bits (365), Expect = 2.895e-34
Identity = 69/154 (44.81%), Postives = 104/154 (67.53%), Query Frame = 2
Query:  197 PIQRTQLPYVTGTSVVALKYKDGILMAADMGGSYGSTIRYKSVERIKPIGKHSLLGASGEISDFQELLRNLDELILYDNMWDDGNSLGPKELHSYLTRVMYNRRNKFDPLWNSLVLGGV--KNGQKYLGMVSMIGVNFEDSHVATGFGNHLAGP 652
            PIQRT  P VTG+SV+ALK+ DG+++AAD   SYGS  R+  VER+  +G ++++GA G+ISD+Q++ R L++L + +  + DG +L P  +H YL++V+Y RRNK DP WN L++ GV  +N + Y+    + G  +    +ATGF  HLA P
Sbjct:   32 PIQRTVQPIVTGSSVLALKFADGVMIAADNLASYGSLARFYDVERLTKVGDNTIVGAGGDISDYQQIQRLLEKLEIKEGNYGDGYALQPSYIHEYLSKVLYARRNKLDPYWNQLIVAGVDGENKEPYVAFADLRGTTYSAPAIATGFAMHLALP 185          
BLAST of CX295361 vs. ExPASy Swiss-Prot
Match: PSB4_DROME (Proteasome subunit beta type-4 OS=Drosophila melanogaster GN=Prosbeta7 PE=1 SV=1)

HSP 1 Score: 135.576 bits (340), Expect = 2.294e-31
Identity = 66/143 (46.15%), Postives = 98/143 (68.53%), Query Frame = 2
Query:  227 TGTSVVALKYKDGILMAADMGGSYGSTIRYKSVERIKPIGKHSLLGASGEISDFQELLRNLDELILYDNMWDDGNSLGPKELHSYLTRVMYNRRNKFDPLWNSLVLGGVKN-GQKYLGMVSMIGVNFEDSHVATGFGNHLAGP 652
            TGTSV+ ++Y  G+++AAD   SYGS  RY+++ER+  + K+ LLG SG+ +D Q + RN+D+ ++ D   DD   + PK L S++TRV+YNRR++ +PL+  +V+GGV N G  YL  V + G ++ED  VATGF  HLA P
Sbjct:   56 TGTSVLGIRYDSGVMLAADTLVSYGSMARYQNIERVFKVNKNILLGGSGDFADIQSIKRNIDQKMIEDQCCDDNIEMKPKSLASWMTRVLYNRRSRMNPLYIDVVVGGVDNEGTPYLANVDLRGRSYEDYVVATGFARHLAVP 198          
The following BLAST results are available for this feature:
BLAST of CX295361 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 12
Match NameE-valueIdentityDescription
PSB4_ARATH5.967e-7284.00Proteasome subunit beta type-4 OS=Arabidopsis thal... [more]
PSB4_BOVIN1.027e-3948.68Proteasome subunit beta type-4 OS=Bos taurus GN=PS... [more]
PSB4_XENLA2.289e-3946.71Proteasome subunit beta type-4 (Fragment) OS=Xenop... [more]
PSB4_HUMAN5.099e-3947.37Proteasome subunit beta type-4 OS=Homo sapiens GN=... [more]
PSB4_MOUSE1.136e-3847.37Proteasome subunit beta type-4 OS=Mus musculus GN=... [more]
PSB4_RAT1.483e-3847.10Proteasome subunit beta type-4 OS=Rattus norvegicu... [more]
PSB4_DICDI2.798e-3746.67Proteasome subunit beta type-4 OS=Dictyostelium di... [more]
PSB4_YEAST2.895e-3445.22Proteasome component PRE4 OS=Saccharomyces cerevis... [more]
PSB4_SCHPO2.895e-3444.81Probable proteasome subunit beta type-4 OS=Schizos... [more]
PSB4_DROME2.294e-3146.15Proteasome subunit beta type-4 OS=Drosophila melan... [more]

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Properties
Property NameValue
Genbank descriptionC05071D07SK PhIFruit1 Citrus clementina cDNA clone C05071D07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX295361 ID=CX295361; Name=CX295361; organism=Citrus clementina; type=EST; length=669bp
CGAGGCGATTGTCATGGTTCTTGTTCAGCAGGATACCGAGTTAGTATAAT
AAAACACAAGGGTTCTCAGTTCTCAGAAGTTAGATCGTGAAGCCTCAGCT
GATCAGCTTTGCTATTTACTGAGAAAGTGAATCAAATCTCAAAACGAATT
AATGGAATCGATCCAAGCCAAACAAGGACTTGTCGGCCCTAACGACCCCA
TTCAAAGAACCCAGTTACCATATGTGACTGGTACATCTGTTGTTGCGCTG
AAGTACAAAGATGGCATATTAATGGCTGCTGACATGGGAGGTTCCTATGG
GTCAACAATCCGATACAAGAGTGTGGAACGGATTAAACCTATTGGAAAGC
ATTCTCTACTGGGTGCCAGTGGAGAAATAAGTGATTTTCAGGAGCTTTTG
CGTAATCTTGATGAGCTTATACTTTATGACAATATGTGGGATGATGGGAA
CTCTTTGGGGCCAAAAGAGTTGCACAGCTATTTGACCAGGGTCATGTATA
ACAGGCGTAACAAGTTTGATCCATTGTGGAACTCTCTTGTGCTTGGTGGA
GTGAAAAATGGACAGAAATATCTTGGCATGGTATCAATGATAGGAGTGAA
CTTTGAGGACAGCCATGTTGCAACTGGGTTTGGGAATCATCTTGCAGGGC
CATTCTTCGTGATGAATGG
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