CX295362

Overview
NameCX295362
Unique NameCX295362
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length670
Libraries
Library NameType
PhIFruit1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig642 contig Ccv1_Contig642:1..668. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of CX295362 vs. ExPASy Swiss-Prot
Match: YC22_ARATH (Uncharacterized calcium-binding protein At1g02270 OS=Arabidopsis thaliana GN=At1g02270 PE=2 SV=2)

HSP 1 Score: 124.405 bits (311), Expect = 5.337e-28
Identity = 61/113 (53.98%), Postives = 81/113 (71.68%), Query Frame = -1 
Query:  335 QVNLAGLPYGLSFQETDDLWAQADVDGNGVVNYEEFKQRMWNLSCSAQIENNCNDN-MEDSKDCSEKEILGFAVKDAFLFPSEVEKGKWPENYSLSDHAPLSVVFSPVRMQSS 670
            +VNL G+P+GLSF+ET +LW +AD+DGNGV +YEE K ++WN++   Q   NC ++ ME  K+  E E +G  V  A LFP E EKG WPENY++SDHA L+V FSPV+M  S
Sbjct:  374 KVNLTGIPHGLSFEETKELWVRADLDGNGVFDYEELK-KIWNMTMVNQ-PGNCKESVMESKKEEGEDEAIGLKVNKAILFPQEAEKGLWPENYNISDHACLTVQFSPVKMLCS 484
The following BLAST results are available for this feature:
BLAST of CX295362 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
YC22_ARATH5.337e-2853.98Uncharacterized calcium-binding protein At1g02270 ... [more]
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Properties
Property NameValue
Genbank descriptionC05071D08SK PhIFruit1 Citrus clementina cDNA clone C05071D08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX295362 ID=CX295362; Name=CX295362; organism=Citrus clementina; type=EST; length=670bp
GGTTTTTTTCTTTTTTTTTTAAGAAGAAAATCAGTAACAGTTTCACTAAG
ATTATGGATTTACACTTCTGAATCATACAGGATTTTCGAAAGTCCTAAGA
AAGAATCTTGGGGTTATTTTTCAATCGACAATTTGTAGCTGTGCTTATAG
TTCCCTTTCGGCTGGAAAACTTGGCCCACGGTGACCTATTTTGGGTTACA
GATTTCTTTTCTACAGCATTTGATACTCTCTATGGCTTATCCTTAAATGA
CTTCAGAGCTTTACAAAATTCTCAATCTGCATTGATTTTGATTTTATCTA
CAAATGTGTCTAAGTATCAACTATAGATTTATGAAGAACTTTGCATCCTC
ACGGGCGAAAACACAACACTCAGTGGGGCATGATCAGAAAGAGAGTAATT
CTCAGGCCACTTTCCTTTCTCCACTTCACTGGGGAAGAGAAATGCATCTT
TCACAGCAAAACCTAGGATTTCTTTTTCTGAGCAGTCTTTGGAATCCTCC
ATATTGTCATTGCAATTATTCTCTATTTGTGCTGAACAAGACAAATTCCA
CATTCGCTGCTTAAATTCTTCATAATTAACAACACCATTTCCATCAACAT
CTGCTTGGGCCCATAGGTCATCAGTTTCCTGGAAGCTCAGTCCATAAGGC
AGGCCAGCTAAGTTTACCTG
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