CX295387

Overview
NameCX295387
Unique NameCX295387
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length717
Libraries
Library NameType
PhIFruit1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX295387 vs. ExPASy Swiss-Prot
Match: GEM1_YEAST (Mitochondrial Rho GTPase 1 OS=Saccharomyces cerevisiae GN=GEM1 PE=1 SV=1)

HSP 1 Score: 132.109 bits (331), Expect = 2.896e-30
Identity = 79/231 (34.20%), Postives = 132/231 (57.14%), Query Frame = 1
Query:   49 GGLSLDGFLSEWALMTLLDPARSVENLIYIGYPGDPSSAIRVTRKRRIDRKKQQA------ERNVFQCFVFGPKKAGKSALLNSFLGRPFSDNYTPTTDERYAVNVVDQPGGTKKTVVLREIPEEAVAKLLSNKDSLAACDIAVFVHDSSDESSWKRATELLVEVASHGEDTGFEVPCLIVAAKDDLDSFAMAIQ-DSIRVSQDMGIEAPIPVSSK-LGEFNIIFPEIVQA 717
            G ++L G+L++W++ T L+ + +   L+Y G+  D   A++VT+ R++ R+  +       +R VF CFV G    GKS+LL +FLGR FS+ Y+PT   R AVN ++  GG +  ++L+E+ E+  A +L NKD L  CD+    +DSSD  S+     LL +  +H +D    +P + VA+K DLD      Q     ++ ++ +  P+ +SS+ L   N +F +I +A
Sbjct:  384 GCITLQGWLAQWSMTTFLNYSTTTAYLVYFGFQEDARLALQVTKPRKMRRRSGKLYRSNINDRKVFNCFVIGKPCCGKSSLLEAFLGRSFSEEYSPTIKPRIAVNSLELKGGKQYYLILQELGEQEYA-ILENKDKLKECDVICLTYDSSDPESFSYLVSLL-DKFTHLQD----LPLVFVASKADLDKQQQRCQIQPDELADELFVNHPLHISSRWLSSLNELFIKITEA 608          
BLAST of CX295387 vs. ExPASy Swiss-Prot
Match: GEM1_CRYNE (Mitochondrial Rho GTPase 1 OS=Cryptococcus neoformans GN=GEM1 PE=3 SV=2)

HSP 1 Score: 128.257 bits (321), Expect = 4.182e-29
Identity = 81/249 (32.53%), Postives = 133/249 (53.41%), Query Frame = 1
Query:   19 YKDAAEKTALGGLSLDGFLSEWALMTLLDPARSVENLIYIGYPGDPSS------AIRVTRKRRIDRKKQQAERNVFQCFVFGPKKAGKSALLNSFLGRPFS------DNYTPTTDERYAVNVVDQPGGTKKTVVLREIPEEAVAKLLSNKDSLAACDIAVFVHDSSDESSWKRATELLVEVASHGEDTGFEVPCLIVAAKDDLDSFAMAIQDSIRVSQD-----MGIEAPIPVSSKLGEFNIIFPEIVQ 714
            + D      +G ++L G+L++W++ TLL+   ++  L Y+GY   P++      A+ VTR R+ DR++++  RNVF C+V G   +GK++LL SF+ RPF         Y PTT     VN V+   G +K +VL+E   +  +++L N   L   DI ++VHDSSD +S+   + L  + +         +P + VA K DLD      Q    V  D     +G++AP+ VSS+LG  + ++  I +
Sbjct:  383 FPDTTITDDMGRVTLQGWLAQWSMTTLLNHRTTLNYLAYLGYSSSPATDLPTPTALHVTRPRKQDRRQRKVTRNVFLCYVLGATGSGKTSLLRSFVNRPFKGGEDGLGGYEPTTKVLSVVNSVEME-GVEKYLVLQEFGSKYESEILRNSKRLDMADIIIYVHDSSDTNSFSYISNLRQQYSLD------HIPSIFVATKSDLD----LAQQRHEVQPDVYCRRLGLQAPMAVSSRLGPLHNLWVAITR 620          
BLAST of CX295387 vs. ExPASy Swiss-Prot
Match: GEM1_CANGA (Mitochondrial Rho GTPase 1 OS=Candida glabrata GN=GEM1 PE=3 SV=1)

HSP 1 Score: 128.257 bits (321), Expect = 4.182e-29
Identity = 80/233 (34.33%), Postives = 127/233 (54.51%), Query Frame = 1
Query:   43 ALGGLSLDGFLSEWALMTLLDPARSVENLIYIGYPGDPSSAIRVTRKRRIDRKKQQ------AERNVFQCFVFGPKKAGKSALLNSFLGRPFSDNYTPTTDERYAVNVVDQPGGTKKTVVLREIPEEAVAKLLSNKDSLAACDIAVFVHDSSDESSWKRATELLVEVASHGEDTGFEVPCLIVAAKDDLDSFAMAIQ-DSIRVSQDMGIEAPIPVSSK-LGEFNIIFPEIVQA 717
            A G ++L G+L++W + T LD   +   L+Y+G+  D   A+++T+ RR+ R++ +       +R VF CFV G + +GKS+LL SFLGR FS+ Y+PT   R AVN V+  G  +  ++L+E  E+  A +L N   LA CD+    +DSSD  S+    ELL        +   ++P + VA K DLD      +      +  + ++ P+ VSS      N +F +I+QA
Sbjct:  372 AKGFVTLQGWLAQWTMTTYLDYKITTAYLVYLGFQEDAKLAVQITKSRRMRRRQGRLYRSYVTDRKVFNCFVVGKRNSGKSSLLESFLGRLFSEAYSPTIRPRVAVNNVEVTGDKQYYLILQEFGEQEEA-ILQNPSRLAECDVLCLTYDSSDPESFSYLLELLT-----NNEIMKDIPVVFVALKADLDKQQQRCKFQPDEFTDTLYLDHPLHVSSTWSSSLNQLFKKIIQA 598          
BLAST of CX295387 vs. ExPASy Swiss-Prot
Match: GEM1_GIBZE (Mitochondrial Rho GTPase 1 OS=Gibberella zeae GN=GEM1 PE=3 SV=1)

HSP 1 Score: 123.25 bits (308), Expect = 1.345e-27
Identity = 74/233 (31.76%), Postives = 125/233 (53.65%), Query Frame = 1
Query:   19 YKDAAEKTALGGLSLDGFLSEWALMTLLDPARSVENLIYIGY-PGDP----SSAIRVTRKRRIDRKKQQAERNVFQCFVFGPKKAGKSALLNSFLGRPFSDNYTPTTDERYAVNVVDQPGGTKKTVVLREIPEEAVAKLLSNKDSLAACDIAVFVHDSSDESSWKRATELLVEVASHGEDTGFEVPCLIVAAKDDLDSFAMAIQ-DSIRVSQDMGIEAPIPVSSKLGEFNIIF 699
            +  +  +   G ++L G+L++W++ T ++P  ++E L Y+G+ P +P    ++A+++T+ R+   +  + ERNV  C+V G   AGKSALL+SFL RPF   Y PT   R AVN V+ PGG +  ++L E+ E   A +L N+  L ACD+  + +DSSD  S+    +L  +          E+P +  A K D D      +    + +  + +  P+ VS   G  + +F
Sbjct:  349 FPSSTVRNEAGHVTLQGWLAQWSMTTFIEPKTTIEYLAYLGFEPSNPKDSITAALKITKPRKRRSRLGRVERNVVLCYVLGASGAGKSALLDSFLNRPFYGLYHPTIKPRRAVNSVELPGGKQVYLILEELGELEPA-ILENRAKLDACDLICYAYDSSDPDSFSHIVDLRKKYPHLD-----ELPSIYTALKADKDKTNQRCELQPDQYTSSLSMSLPLHVSVTWGSISELF 575          
BLAST of CX295387 vs. ExPASy Swiss-Prot
Match: GEM1_CANAL (Mitochondrial Rho GTPase 1 OS=Candida albicans GN=GEM1 PE=3 SV=2)

HSP 1 Score: 119.783 bits (299), Expect = 1.488e-26
Identity = 78/215 (36.28%), Postives = 119/215 (55.35%), Query Frame = 1
Query:   49 GGLSLDGFLSEWALMTLLDPARSVENLIYIGYP-GDPSSAIRVTRKRRIDRKKQQA------ERNVFQCFVFGPKKAGKSALLNSFLGRPFSDNYTPTTDERYAVNVVDQPGGTKKTVVLREIPEEAVAKLLSNKDSLAACDIAVFVHDSSDESSWKRATELLVEVASHGEDTGFEVPCLIVAAKDDLDSFAMAIQ-DSIRVSQDMGIEAPIPVS 669
            G ++L G+L++W L T L    ++E L Y+G+  G+ + A++VT+ R+I +K  +       +RNVF CF+ G  KAGKS+LL SFL   +SD Y+PT   R  V  ++  GG +  ++L E+ E   A +L NK  L  CD+  + +DSSD  S++   EL  E   H  D   EVP + VA K DLD             ++D+ + +P+ VS
Sbjct:  370 GYVTLQGWLAQWNLTTFLSYKTTLEYLAYLGFDEGNSTKALKVTKPRKIRQKNGKTYRNAVNDRNVFNCFIVGAPKAGKSSLLESFLHGSYSDIYSPTIQPRLVVKDIELRGGKQCYLILEELGELEPA-ILENKSRLDQCDVICYAYDSSDPESFQYLVELR-EKHGHLLD---EVPAVFVALKADLDKQQQRCDVQPENYTRDLFLNSPLHVS 579          
BLAST of CX295387 vs. ExPASy Swiss-Prot
Match: GEM1_ASHGO (Mitochondrial Rho GTPase 1 OS=Ashbya gossypii GN=GEM1 PE=3 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 7.383e-26
Identity = 67/188 (35.64%), Postives = 105/188 (55.85%), Query Frame = 1
Query:   49 GGLSLDGFLSEWALMTLLDPARSVENLIYIGYPGDPSSAIRVTRKRRIDRKK------QQAERNVFQCFVFGPKKAGKSALLNSFLGRPFSDNYTPTTDERYAVNVVDQPGGTKKTVVLREIPEEAVAKLLSNKDSLAACDIAVFVHDSSDESSWKRATELLVEVASHGEDTGFEVPCLIVAAKDDLD 594
            G ++L G+L+ W++ T +D   + E L+Y+G+  D   A+ VTR RR  R+          +R VF C++ G   +GKS+LL SFLGRPFS+ Y+PT   + AVN ++  GG +  ++L+E  ++  A +L N+  +  CD+    +DSSD  S+      LV    H +     +P + VA K DLD
Sbjct:  381 GFITLQGWLAHWSMTTFIDYKTTTEYLVYLGFEKDAKLALHVTRARRKRRRNGIFYRAPVNDRKVFNCYILGKPNSGKSSLLESFLGRPFSETYSPTIRPKIAVNSLELKGGKQYYLILQEFGQQEPA-ILENQQKVMECDVLCLAYDSSDPESFSYLVN-LVNRYQHLK----ALPMVFVALKADLD 562          
BLAST of CX295387 vs. ExPASy Swiss-Prot
Match: GEM1_NEUCR (Mitochondrial Rho GTPase 1 OS=Neurospora crassa GN=gem-1 PE=3 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 2.148e-25
Identity = 71/241 (29.46%), Postives = 122/241 (50.62%), Query Frame = 1
Query:   13 TPYKDAAEKTALGGLSLDGFLSEWALMTLLDPARSVENLIYIGYPGD-----PSSAIRVTRKRRIDRKKQQAERNVFQCFVFGPKKAGKSALLNSFLGRPFSDNYTPTTDERYAVNVVDQPGGTKKTVVLREIPEEAVAKLLSNKDSLAACDIAVFVHDSSDESSWKRATELLVEVASHGEDTGFEVPCLIVAAKDDLDSFAMAIQ-DSIRVSQDMGIEAPIPVSSKLGEFNIIFPEIVQA 717
            T +     +   G ++L G+L++W++ T L+P  ++E L Y+G+         ++A+++T+ R+  R+  + +RNV  C++ G   AGKS+LL+ FL RPF   Y PT   R AVN V+  GG +  ++L E+ E   A +L N+  L ACD+  + +DSS+  S+    EL             E+P +  A K D D      +      +  + + AP+ VS      + +F  + +A
Sbjct:  348 TSFPSTTVRNEAGHITLQGWLAQWSMTTFLEPKTTLEYLAYLGFETPNARETTTAALKITKPRKRRRRPGRVDRNVVLCYILGSSGAGKSSLLDVFLNRPFDTLYHPTIKPRQAVNSVELQGGKQCYLILEELGELEPA-ILENQAKLDACDLICYAYDSSEPDSFSHIVELRKRYPQLD-----ELPAVYTALKADRDKTTQRSELQPDAYTAALNMSAPLHVSVTWNSISELFVALAEA 582          
BLAST of CX295387 vs. ExPASy Swiss-Prot
Match: MIRO2_CHICK (Mitochondrial Rho GTPase 2 OS=Gallus gallus GN=RHOT2 PE=2 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 3.664e-25
Identity = 74/190 (38.95%), Postives = 105/190 (55.26%), Query Frame = 1
Query:   40 TALGGLSLDGFLSEWALMTLLDPARSVENLIYIGYP-----GDPSSAIRVTRKRRIDRKKQQAERNVFQCFVFGPKKAGKSALLNSFLGRPF-SDNYTPTTDERYAVNVVDQPGGTKKTVVLREIPEEAVAKLLSNKDSLAACDIAVFVHDSSDESSWKRATELLVEVASHGEDTGFEVPCLIVAAKDDL 591
            T  G LSL GFL +W L+  LD    +E L Y+GYP        + A+ VTR++RID +K Q +RNVF C V G + AGKSA L +FLGR   +   +P     Y +N V Q  G +K ++L E+     A+    K S AACD+A  ++D SD  S+     +  +   H  D+  ++PC+ VA+K DL
Sbjct:  352 TDKGLLSLHGFLCQWTLIAYLDVRHCLECLGYLGYPILSEQDSQTQALTVTREKRIDLEKGQTQRNVFLCKVLGARGAGKSAFLQAFLGRSLAAQRESPGEPSPYTINTV-QVNGQEKYLILHEVS----AETQFTKPSDAACDVACLIYDLSDPKSFSYCASIYKQ---HYMDS--QIPCVFVASKTDL 531          
BLAST of CX295387 vs. ExPASy Swiss-Prot
Match: GEM1_ASPOR (Mitochondrial Rho GTPase 1 OS=Aspergillus oryzae GN=gem1 PE=3 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 1.066e-24
Identity = 71/198 (35.86%), Postives = 107/198 (54.04%), Query Frame = 1
Query:   19 YKDAAEKTALGGLSLDGFLSEWALMTLLDPARSVENLIYIGYPGDPSS------AIRVTRKRRIDRKKQQAERNVFQCFVFGPKKAGKSALLNSFLGRPFSDNYTPTTDERYAVNVVDQPGGTKKTVVLREIPEEAVAKLLSNKDSLAACDIAVFVHDSSDESSWKRATELLVEVASHGEDTGFEVPCLIVAAKDDLD 594
            +  +  +   G ++L G+L++W++ T   P  ++E L Y+G+     S      A++VTR R+  ++  +  RNV    V GP  +GKSALL++FL R FS  Y PT   R AVN V+ PGG +  ++L E+ E   A L +    L  CD+ V+ +DSSD  S+    EL  +   H E    E+P + VA K DLD
Sbjct:  350 FPSSTVRNEAGHVTLQGWLAQWSMTTFTSPKTTLEYLAYLGFESSDRSNPSTTAALKVTRPRKRRKRPGRVGRNVVLGHVLGPPGSGKSALLDAFLARGFSTTYHPTIQPRTAVNTVELPGGKQCYLILDELGELEPAILENQVKLLDQCDVIVYTYDSSDPDSFAYIPELRSKY-PHLE----ELPSVFVALKADLD 542          
BLAST of CX295387 vs. ExPASy Swiss-Prot
Match: GEM1_KLULA (Mitochondrial Rho GTPase 1 OS=Kluyveromyces lactis GN=GEM1 PE=3 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 1.818e-24
Identity = 64/186 (34.41%), Postives = 106/186 (56.99%), Query Frame = 1
Query:   55 LSLDGFLSEWALMTLLDPARSVENLIYIGYPGDPSSAIRVTRKRRIDRKK------QQAERNVFQCFVFGPKKAGKSALLNSFLGRPFSDNYTPTTDERYAVNVVDQPGGTKKTVVLREIPEEAVAKLLSNKDSLAACDIAVFVHDSSDESSWKRATELLVEVASHGEDTGFEVPCLIVAAKDDLD 594
            ++L G+L+ W++ T +D + + E LIY+G+  D  +A+++T+ RR  R+          +R V  C++ G   +GKS+LL SFLGR FS+ Y+PT   + +VN ++  GG +  ++L+E+ E+    +L NK  L  CD+    +DSSD  S+     L+ +      D   E+P + VA K DLD
Sbjct:  384 ITLQGWLALWSMTTFIDYSVTTEYLIYLGFDKDAKNALQITKPRRKRRRNGVYYRAPVFDRKVLNCYMLGKGNSGKSSLLESFLGRSFSEAYSPTIRPKISVNSLELKGGKQYYLILQELGEQE-TPILENKGKLDECDVLCLCYDSSDPESFSYIVSLIDKF-----DYLKELPIVFVALKADLD 563          
The following BLAST results are available for this feature:
BLAST of CX295387 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 30
Match NameE-valueIdentityDescription
GEM1_YEAST2.896e-3034.20Mitochondrial Rho GTPase 1 OS=Saccharomyces cerevi... [more]
GEM1_CRYNE4.182e-2932.53Mitochondrial Rho GTPase 1 OS=Cryptococcus neoform... [more]
GEM1_CANGA4.182e-2934.33Mitochondrial Rho GTPase 1 OS=Candida glabrata GN=... [more]
GEM1_GIBZE1.345e-2731.76Mitochondrial Rho GTPase 1 OS=Gibberella zeae GN=G... [more]
GEM1_CANAL1.488e-2636.28Mitochondrial Rho GTPase 1 OS=Candida albicans GN=... [more]
GEM1_ASHGO7.383e-2635.64Mitochondrial Rho GTPase 1 OS=Ashbya gossypii GN=G... [more]
GEM1_NEUCR2.148e-2529.46Mitochondrial Rho GTPase 1 OS=Neurospora crassa GN... [more]
MIRO2_CHICK3.664e-2538.95Mitochondrial Rho GTPase 2 OS=Gallus gallus GN=RHO... [more]
GEM1_ASPOR1.066e-2435.86Mitochondrial Rho GTPase 1 OS=Aspergillus oryzae G... [more]
GEM1_KLULA1.818e-2434.41Mitochondrial Rho GTPase 1 OS=Kluyveromyces lactis... [more]

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Properties
Property NameValue
Genbank descriptionC05071F09SK PhIFruit1 Citrus clementina cDNA clone C05071F09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX295387 ID=CX295387; Name=CX295387; organism=Citrus clementina; type=EST; length=717bp
TCCTTGGGATGAACTCCATATAAGGACGCTGCAGAAAAAACTGCATTGGG
AGGACTATCTCTTGATGGGTTTTTGTCAGAGTGGGCACTTATGACGCTCT
TAGACCCGGCTCGTAGCGTGGAAAACTTGATATACATTGGATATCCGGGT
GATCCTTCTTCTGCCATCCGTGTAACGAGGAAAAGGCGTATAGATCGTAA
AAAACAACAAGCCGAAAGAAATGTCTTCCAGTGCTTTGTCTTTGGGCCTA
AAAAGGCTGGAAAATCTGCACTACTGAATTCTTTTCTAGGAAGGCCCTTC
TCCGATAATTATACTCCAACCACTGATGAGCGATATGCAGTAAATGTTGT
CGATCAACCTGGGGGAACGAAGAAAACTGTTGTGTTACGAGAAATTCCTG
AAGAAGCAGTTGCAAAACTGCTGTCGAATAAAGATTCTTTGGCCGCCTGC
GACATAGCAGTATTTGTTCATGATAGTTCCGATGAGTCCTCATGGAAAAG
AGCAACTGAATTGCTTGTGGAAGTTGCCAGTCATGGTGAAGATACTGGCT
TTGAGGTGCCTTGCCTCATTGTAGCAGCTAAAGATGATCTGGATTCATTT
GCAATGGCTATTCAGGATTCTATCAGGGTTAGTCAGGATATGGGGATAGA
GGCTCCGATACCTGTTAGCTCGAAGTTGGGTGAATTTAACATTATTTTCC
CGGAGATCGTACAGGCA
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