CX295415

Overview
NameCX295415
Unique NameCX295415
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length626
Libraries
Library NameType
PhIFruit1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig13388 contig Ccv1_Contig13388:6..631. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CX295415 vs. ExPASy Swiss-Prot
Match: TI10A_ARATH (Protein TIFY 10A OS=Arabidopsis thaliana GN=TIFY10A PE=1 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 7.728e-23
Identity = 68/139 (48.92%), Postives = 83/139 (59.71%), Query Frame = 3 
Query:  243 EKSSFSQTCSLLSQYLKEGGSFGDLSLGISSNIEANGVPEIPRRPAATTMNLFPVS----DNSGQDVSARNMAAPRNWESMNLFPQQAGFA------PKNDTPNMIDSSLN-KPPPQTAQMTIFYGGQVIVFNDFPADK 626
            +K SFSQTCS LSQYLKE GSFGDLSLG++   + NG     R+P  TTM+LFP      D+  QDV           +  NLFP+Q  F+      PK D   M  ++ + KP  QTA +TIFY GQVIVFNDF A+K
Sbjct:   19 KKPSFSQTCSRLSQYLKENGSFGDLSLGMACKPDVNGTLGNSRQP-TTTMSLFPCEASNMDSMVQDV-----------KPTNLFPRQPSFSSSSSSLPKEDVLKMTQTTRSVKPESQTAPLTIFYAGQVIVFNDFSAEK 145
[Close]
BLAST of CX295415 vs. ExPASy Swiss-Prot
Match: TI10B_ARATH (Protein TIFY 10B OS=Arabidopsis thaliana GN=TIFY10B PE=1 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 8.841e-19
Identity = 58/134 (43.28%), Postives = 79/134 (58.96%), Query Frame = 3 
Query:  246 KSSFSQTCSLLSQYLKEGGSFGDLSLGISSNIEANGVPEIPRRPAATTMNLFPVSDNSGQDVSARNMAAPRNWESMNLFPQQAGFAPKNDTPNMIDSSL-------NKPPPQTAQMTIFYGGQVIVFNDFPADK 626
            K SFSQTC+ LS+YLKE GSFGDLSLG++   + NG    P     T MNLFP  + SG D S    A   + +   +FP+Q+ F+  + +    D  +        KP  Q+A +TIFYGG+V+VF+DF A+K
Sbjct:   15 KPSFSQTCTRLSRYLKEKGSFGDLSLGMTCKPDVNGGSRQP-----TMMNLFP-CEASGMDSS----AGQEDIKPKTMFPRQSSFSSSSSSGTKEDVQMIKETTKSVKPESQSAPLTIFYGGRVMVFDDFSAEK 138
The following BLAST results are available for this feature:
BLAST of CX295415 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
TI10A_ARATH7.728e-2348.92Protein TIFY 10A OS=Arabidopsis thaliana GN=TIFY10... [more]
TI10B_ARATH8.841e-1943.28Protein TIFY 10B OS=Arabidopsis thaliana GN=TIFY10... [more]
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Properties
Property NameValue
Genbank descriptionC05072A02SK PhIFruit1 Citrus clementina cDNA clone C05072A02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX295415 ID=CX295415; Name=CX295415; organism=Citrus clementina; type=EST; length=626bp
CTCGTGCCGAATTCGGCACGAGGGTTATTATTCCTCGTGTCCATCAACAG
ATAAGCCTTTTTCTCCTTACAAATACAGATTGATCATCCAACAGAACAAC
TTCACCAATTCAATTCTGCAGCGTCAGTTGCAGCGCACTAGTTTTATTTT
TAAAATTTATTTTTGCTTGTGGGTTTCCGCTTCTGAGTTGGTTAAACACA
ACAAGTATGGCGAGCTCGTCGGAGATGTCGGTTAACTTGCCGGAGAAATC
AAGTTTCTCTCAGACGTGTAGTCTTTTGAGTCAGTACTTGAAAGAGGGAG
GTAGCTTTGGAGATCTTAGCCTCGGGATATCAAGCAACATTGAAGCTAAT
GGGGTACCCGAGATCCCGCGGCGGCCAGCAGCTACAACTATGAATTTGTT
TCCAGTAAGTGACAACTCTGGACAAGATGTTTCAGCTCGAAACATGGCAG
CTCCTCGAAACTGGGAATCAATGAATTTGTTCCCTCAACAAGCTGGTTTT
GCTCCTAAGAATGATACCCCTAACATGATAGATTCAAGTTTAAACAAGCC
CCCTCCGCAAACTGCTCAAATGACTATATTTTATGGCGGACAAGTGATTG
TGTTCAATGATTTTCCTGCTGATAAA
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