CX295436

Overview
NameCX295436
Unique NameCX295436
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length705
Libraries
Library NameType
PhIFruit1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig649 contig Ccv1_Contig649:1..705. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of CX295436 vs. ExPASy Swiss-Prot
Match: MIP1_ARATH (MND1-interacting protein 1 OS=Arabidopsis thaliana GN=MIP1 PE=1 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 1.365e-24
Identity = 57/135 (42.22%), Postives = 86/135 (63.70%), Query Frame = 1 
Query:   55 WSDLTESQLEELVLSNLDAIFKSAIKKIVACGYMEEVATKAVLRSGLCYGSKDTVSNIVDNTLAFLRSGQEINSSR-------EHYFQDLPQLEKYILAELVCVLREVRPFFSTGDAMWCLLICDMNVSHACAMD 438
            W+  TE  LEE++L +L+ ++  A+ K++  GY E VA KAVL +G CYG  D ++NIV+N+L++L SG     S        E  F DL  LE+Y LA ++ +L++V+P  S GDAMWCLL+ +++V  A  +D
Sbjct:   69 WAYCTEEHLEEILLKHLEFLYNQAVSKLLELGYEERVALKAVLSNGHCYGELDVLTNIVNNSLSYLNSGGGGGGSNGNGEDRTETGFTDLRDLEEYSLAGMIYLLQQVKPNLSKGDAMWCLLMSELHVGRASTLD 203
The following BLAST results are available for this feature:
BLAST of CX295436 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
MIP1_ARATH1.365e-2442.22MND1-interacting protein 1 OS=Arabidopsis thaliana... [more]
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Properties
Property NameValue
Genbank descriptionC05072B11SK PhIFruit1 Citrus clementina cDNA clone C05072B11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX295436 ID=CX295436; Name=CX295436; organism=Citrus clementina; type=EST; length=705bp
GGGCCAAGCCGACCTAGAGAAGAATTAGAGGTGGAGGAGTTTCAAGATGC
AGATTGGAGTGATCTTACAGAAAGTCAGCTGGAAGAACTAGTTTTGAGCA
ATCTGGATGCAATTTTCAAGAGTGCAATAAAAAAGATTGTTGCTTGTGGT
TACATGGAAGAAGTAGCCACAAAGGCTGTTTTGAGGTCTGGCCTTTGTTA
TGGCAGTAAGGACACTGTTTCAAATATAGTGGATAACACATTAGCATTCC
TAAGAAGTGGCCAAGAGATAAATTCTTCTAGGGAACACTATTTTCAGGAT
TTACCGCAGCTAGAGAAGTATATACTGGCTGAACTGGTTTGTGTTTTGCG
TGAAGTTAGGCCTTTCTTCAGTACTGGCGATGCAATGTGGTGTTTATTGA
TTTGTGACATGAATGTGTCACATGCATGTGCAATGGATGGCGATCCCTTG
AGTAGTTTCTCCGGTGATGGAGCTTCAAATGGGAACTCACACATTACCAC
TCAACTTCAGACGAAAACAGAGGCAAAATGTTCTGAATTGAATCTTCCAA
ATCCCTCTAAGCCTGTTCCTTCAATCCCTTGTTCCCATAGTTCCCAACCC
GAGGCACCTACCGTGGCAGGAATTCCTAATATAACAAAATCAAAGAATTC
TCATGTTGGCAGTGAGATATCAGAAAAGGACGGTACTAATTCCATATCTG
ATAAT
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