CX295530

Overview
NameCX295530
Unique NameCX295530
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length598
Libraries
Library NameType
DroRLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CX295530_ssr157 microsatellite CX295530_ssr157:157..168. BLAST: Citrus ESTs to Prunus persica proteins V1
CX295530_ssr438 microsatellite CX295530_ssr438:438..452. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig9207 contig Ccv1_Contig9207:1..594. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CX295530 vs. ExPASy Swiss-Prot
Match: ZN207_HUMAN (Zinc finger protein 207 OS=Homo sapiens GN=ZNF207 PE=1 SV=1)

HSP 1 Score: 129.798 bits (325), Expect = 1.025e-29
Identity = 53/75 (70.67%), Postives = 64/75 (85.33%), Query Frame = 1 
Query:  187 WCYYCDREFDDEKILVQHQKAKHFKCHVCHKKLSTAGGMAIHVLQVHKENVTKVPNAKPGRESTDIEIYGMQGIP 411
            WC+YC+R+FDDEKIL+QHQKAKHFKCH+CHKKL T  G+AIH +QVHKE +  VPNA PGR   ++EIYGM+GIP
Sbjct:   12 WCWYCNRDFDDEKILIQHQKAKHFKCHICHKKLYTGPGLAIHCMQVHKETIDAVPNAIPGRTDIELEIYGMEGIP 86
[Close]
BLAST of CX295530 vs. ExPASy Swiss-Prot
Match: ZN207_PONAB (Zinc finger protein 207 OS=Pongo abelii GN=ZNF207 PE=2 SV=1)

HSP 1 Score: 128.642 bits (322), Expect = 2.283e-29
Identity = 53/75 (70.67%), Postives = 63/75 (84.00%), Query Frame = 1 
Query:  187 WCYYCDREFDDEKILVQHQKAKHFKCHVCHKKLSTAGGMAIHVLQVHKENVTKVPNAKPGRESTDIEIYGMQGIP 411
            WC+YC+R+FDDEKIL QHQKAKHFKCH+CHKKL T  G+AIH +QVHKE +  VPNA PGR   ++EIYGM+GIP
Sbjct:   12 WCWYCNRDFDDEKILTQHQKAKHFKCHICHKKLYTGPGLAIHCMQVHKETIDAVPNAIPGRTDIELEIYGMEGIP 86
The following BLAST results are available for this feature:
BLAST of CX295530 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
ZN207_HUMAN1.025e-2970.67Zinc finger protein 207 OS=Homo sapiens GN=ZNF207 ... [more]
ZN207_PONAB2.283e-2970.67Zinc finger protein 207 OS=Pongo abelii GN=ZNF207 ... [more]
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Properties
Property NameValue
Genbank descriptionC05073B10SK DroRLeaf1 Citrus clementina cDNA clone C05073B10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX295530 ID=CX295530; Name=CX295530; organism=Citrus clementina; type=EST; length=598bp
GATTCGGCCGAGGCTCAGATCAGAGATCCGCGCAGAGATCGAGAGAGGGG
AGAAACAGTAGGAAACCCTAATAAATCAATCGAGCGAGAACGAGAGTGAT
TTTGATAATTTTTTTTTAAGGCAAATAGAGAGAAACAGGGAAGGGCAAAG
ATGGGAAAGAAGAAGAAGAGAGTATCGTCGAAGGTTTGGTGCTATTACTG
CGACAGGGAATTCGATGACGAAAAGATTTTAGTACAACATCAGAAAGCTA
AGCACTTCAAGTGCCACGTGTGCCACAAGAAGCTCTCCACCGCCGGCGGC
ATGGCCATTCACGTCCTTCAGGTTCACAAAGAGAATGTCACCAAAGTACC
TAATGCAAAACCAGGTCGAGAGTCGACCGACATTGAAATTTATGGAATGC
AAGGAATACCACCTGATGTCTTAGCTGCTCATTATGGAGAAGAAGAAGAA
GAAGTTCCATCTAAAATGGCCAAAGTGGATACTTCTTTCCCACAGCTGGT
AGGTGGGGTGGTGCCAGGACAATTGGGTGTCAGCTATCCTCCTCAATCAA
CTTTAGGCATGATGCACCATTTACAGTTCTGCAGTCGGCTCTGCTGTG
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