CX295550

Overview
NameCX295550
Unique NameCX295550
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length744
Libraries
Library NameType
DroRLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig655 contig Ccv1_Contig655:1..744. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX295550 vs. ExPASy Swiss-Prot
Match: RGLG2_ARATH (E3 ubiquitin-protein ligase RGLG2 OS=Arabidopsis thaliana GN=RGLG2 PE=1 SV=1)

HSP 1 Score: 195.282 bits (495), Expect = 2.964e-49
Identity = 93/115 (80.87%), Postives = 104/115 (90.43%), Query Frame = 2
Query:  398 SGNTRKLDRRYSRIADDYKSLDQVTEALARAGLESSNLIVGIDFTKSNEWTGKRSFNRRSLHYIGDGLNPYEQAISIIGKTLAVFDEDNLIPCYGFGDASTHDQDVFSFYSGGRF 742
            S N ++L+R+YS+I+DDY SL+QVTEALARAGLESSNLIVGIDFTKSNEWTG RSFNR+SLH+IG   NPYEQAI+IIG+TLA FDEDNLIPCYGFGDASTHDQDVFSF S  RF
Sbjct:   86 SDNKKRLERKYSKISDDYSSLEQVTEALARAGLESSNLIVGIDFTKSNEWTGARSFNRKSLHFIGSSPNPYEQAITIIGRTLAAFDEDNLIPCYGFGDASTHDQDVFSFNSEDRF 200          
BLAST of CX295550 vs. ExPASy Swiss-Prot
Match: RGLG1_ARATH (E3 ubiquitin-protein ligase RGLG1 OS=Arabidopsis thaliana GN=RGLG1 PE=1 SV=1)

HSP 1 Score: 186.422 bits (472), Expect = 1.377e-46
Identity = 88/111 (79.28%), Postives = 100/111 (90.09%), Query Frame = 2
Query:  410 RKLDRRYSRIADDYKSLDQVTEALARAGLESSNLIVGIDFTKSNEWTGKRSFNRRSLHYIGDGLNPYEQAISIIGKTLAVFDEDNLIPCYGFGDASTHDQDVFSFYSGGRF 742
            +K DRRYS+I+D+Y SL QV+EAL RAGLESSNLIVGIDFTKSNEWTG +SFNR+SLH++ +  NPYEQAI+IIG+TLA FDEDNLIPCYGFGDASTHDQDVFSFY  GRF
Sbjct:  124 KKFDRRYSKISDNYSSLLQVSEALGRAGLESSNLIVGIDFTKSNEWTGAKSFNRKSLHHLSNTPNPYEQAITIIGRTLAAFDEDNLIPCYGFGDASTHDQDVFSFYPEGRF 234          
BLAST of CX295550 vs. ExPASy Swiss-Prot
Match: CPNA2_CAEEL (Copine domain-containing protein 2 OS=Caenorhabditis elegans GN=cpna-2 PE=2 SV=3)

HSP 1 Score: 101.293 bits (251), Expect = 5.826e-21
Identity = 48/92 (52.17%), Postives = 65/92 (70.65%), Query Frame = 2
Query:  449 YKSLDQVTEALARAGLESSNLIVGIDFTKSNEWTGKRSFNRRSLHYIGDG-LNPYEQAISIIGKTLAVFDEDNLIPCYGFGDASTHDQDVFS 721
            +K+LD + +A+  AGLE SNLI GID+TKSN + G+R+F++R LH I    +NPY+Q I I+GKTL+ FD D  IP YGFGD    D  +F+
Sbjct: 7299 FKTLDDIVKAIKHAGLEYSNLIFGIDYTKSNFYQGERTFDKRPLHTIDPAEMNPYQQVIQIVGKTLSSFDADGQIPAYGFGDEEFTDHGIFN 7390          
The following BLAST results are available for this feature:
BLAST of CX295550 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
RGLG2_ARATH2.964e-4980.87E3 ubiquitin-protein ligase RGLG2 OS=Arabidopsis t... [more]
RGLG1_ARATH1.377e-4679.28E3 ubiquitin-protein ligase RGLG1 OS=Arabidopsis t... [more]
CPNA2_CAEEL5.826e-2152.17Copine domain-containing protein 2 OS=Caenorhabdit... [more]
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Properties
Property NameValue
Genbank descriptionC05073D07SK DroRLeaf1 Citrus clementina cDNA clone C05073D07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX295550 ID=CX295550; Name=CX295550; organism=Citrus clementina; type=EST; length=744bp
GAGCAGTTCTTGCATCTGGAAGAAAGCTGGCGGTTTGTATTTTTCGGCTG
TTGTTTGATTTTGAATAAGGTGGCAAATTCAGAATTCTCTTGGAAAAGGC
TGCTGTTCATTTTTAGCAATTGCGTTTACGATAAAATTGCTATTTTAAGG
AGAACAGAGGTTCTTGTTAGAAATTGGTGAATTGCTGTGGATAATTGAGT
TGATGGGAGGCAGAAGCTCCAGGGAGGCGAGTTGGAGGCAGGATTCATCG
TTCCGATCAACTTCTTCATCTTGGGATCCTCAAACCGGGTATTTGCAGTC
CCCTTACGGTCAAGAAAGTCAGAATTATCCACCTCAGACTTATCCGCCCC
CACAAACATATTCCACACAGCAGTATTATCCATCTTCTGAAGAACACAGC
GGCAATACAAGGAAGCTTGATAGGAGATATTCAAGAATTGCTGATGATTA
CAAGTCCTTAGACCAGGTGACTGAAGCTCTTGCTCGTGCTGGCCTTGAAT
CTTCTAATCTCATTGTTGGTATTGATTTCACAAAGAGTAATGAGTGGACA
GGTAAAAGGTCATTTAACAGACGAAGCCTGCATTACATCGGAGATGGTTT
AAATCCCTATGAGCAAGCAATATCCATTATTGGGAAAACTTTAGCTGTCT
TTGACGAGGATAACTTGATTCCCTGTTATGGATTTGGTGATGCATCAACT
CATGATCAAGATGTCTTCAGTTTCTATTCAGGTGGGAGGTTTTG
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