CX295568

Overview
NameCX295568
Unique NameCX295568
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length739
Libraries
Library NameType
DroRLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CX295568_ssr272 microsatellite CX295568_ssr272:272..283. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
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BLAST of CX295568 vs. ExPASy Swiss-Prot
Match: DCP1_ARATH (mRNA-decapping enzyme-like protein OS=Arabidopsis thaliana GN=At1g08370 PE=2 SV=2)

HSP 1 Score: 121.709 bits (304), Expect = 4.134e-27
Identity = 62/87 (71.26%), Postives = 72/87 (82.76%), Query Frame = 2 
Query:   71 MSQTGKLMPNLDQQSTKMLNLTVLQRIDPFIEEILITAAHVTFYEFNIESNQWSRKDVEGSLFVVKRFLS---FFFLINVANCSHLL 322
            MSQ GK++PNLDQ ST++LNLTVLQRIDP+IEEILITAAHVTFYEFNIE +QWSRKDVEGSLFVVKR       F ++N  N  +L+
Sbjct:    1 MSQNGKIIPNLDQNSTRLLNLTVLQRIDPYIEEILITAAHVTFYEFNIELSQWSRKDVEGSLFVVKRSTQPRFQFIVMNRRNTDNLV 87
The following BLAST results are available for this feature:
BLAST of CX295568 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
DCP1_ARATH4.134e-2771.26mRNA-decapping enzyme-like protein OS=Arabidopsis ... [more]
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Properties
Property NameValue
Genbank descriptionC05073F01SK DroRLeaf1 Citrus clementina cDNA clone C05073F01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX295568 ID=CX295568; Name=CX295568; organism=Citrus clementina; type=EST; length=739bp
GAGGGCAACTTTCCCGGGAAAAAAAAGAGAAAATCGGAAGTCGCAATTGG
GGGTTTTAGGGTTTCTGAAAATGTCTCAAACGGGAAAATTGATGCCGAAT
CTGGACCAGCAGAGCACCAAAATGCTAAATCTAACGGTGCTCCAGCGAAT
CGATCCTTTCATTGAAGAGATTCTGATAACCGCAGCTCATGTCACCTTCT
ACGAGTTCAACATCGAGAGCAATCAATGGAGTCGCAAGGACGTTGAAGGA
TCTCTTTTTGTGGTCAAAAGGTTTCTTTCTTTCTTTTTTTTAATAAATGT
TGCTAATTGTTCTCATTTACTTCCAAGATTTTTTTTCCATTTTTATTTTT
ATTTTGTTTTTGATGTTATGTAGAAATACTCAGCCGCGTTTTCAGTTTAT
TGTGATGAATCGGCGTAATACAGGTTTGGATTTGGTACTTCACTTTTATA
ATAGTAATGTCTTTCAATGTTTGTTTGATAAGAAAGTATTGCTGTGCTTG
TTATGATGGATTTTGGTAGAGGACGGTGCTTAATAAGACGGTTTATGCTT
ATTCAGTGGTGGGTGATTTGGTAGTTATATCTATCTATTGATGATCTGAT
AATTATGTGTGGGTGATCTGAATCATACGAAGTAAGTAACTTCGGTGTTA
AAGTGGAGACAGATCTAGTTATGGGAACTTAGAAGCCTATTATTTTCTGG
TGATGATGGGTAAAAATCATGGAATAAACCTTTGTCTCT
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