CX295589

Overview
NameCX295589
Unique NameCX295589
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length668
Libraries
Library NameType
DroRLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig672 contig Ccv1_Contig672:122..789. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX295589 vs. ExPASy Swiss-Prot
Match: PHB2_DICDI (Prohibitin-2 OS=Dictyostelium discoideum GN=phbB PE=3 SV=1)

HSP 1 Score: 234.958 bits (598), Expect = 2.778e-61
Identity = 125/205 (60.98%), Postives = 150/205 (73.17%), Query Frame = 3
Query:   57 KMNFNNV-KVPKMPGGGAVSAXXXXXXXXXXXXYAATHSLYNVEGGHRAIMFNRIVGVKDKVYPEGTHLMIPWFERPVIYDVRARPNLVESTTGSHDLQMVKIGLRVLTRPVADQLPTIYRTLGENYNERVLPSIIHETLKAVVAQYNASQLITQRETVSREIRKILTERAAYFNIALDDVSITSLTFGKEFTFAIEAKQVAAQE 668
            ++NFNN+ K+PK   GG                  A  SL NVEGGHRAI+FNR VG+K+KVY EGTH ++PWFER  IYDVRA+P  + S TGS DLQMV I +RVL++P   QLP IYRTLG++Y+ERVLPSI++E LK++VAQ+NASQLITQRE VSR I K L +RA  FNI LDDVSIT L FG+E+  AIEAKQVA QE
Sbjct:    7 QVNFNNIPKLPKGSFGGGFGLLALGGVGLL-----ALSSLVNVEGGHRAIVFNRFVGIKNKVYNEGTHFIVPWFERAEIYDVRAKPRSISSLTGSKDLQMVNITIRVLSKPKVSQLPAIYRTLGKDYDERVLPSIVNEILKSIVAQFNASQLITQREQVSRLIFKRLVDRAKDFNIELDDVSITHLNFGREYAAAIEAKQVAQQE 206          
BLAST of CX295589 vs. ExPASy Swiss-Prot
Match: PHB2_YEAST (Prohibitin-2 OS=Saccharomyces cerevisiae GN=PHB2 PE=1 SV=2)

HSP 1 Score: 218.779 bits (556), Expect = 2.060e-56
Identity = 108/168 (64.29%), Postives = 136/168 (80.95%), Query Frame = 3
Query:  165 HSLYNVEGGHRAIMFNRIVGVKDKVYPEGTHLMIPWFERPVIYDVRARPNLVESTTGSHDLQMVKIGLRVLTRPVADQLPTIYRTLGENYNERVLPSIIHETLKAVVAQYNASQLITQRETVSREIRKILTERAAYFNIALDDVSITSLTFGKEFTFAIEAKQVAAQE 668
            ++L+NV+GGHRAI+++RI GV  +++ EGTH + PW + P+IYDVRA+P  V S TG+ DLQMV I  RVL+RP   QLPTIYRTLG++Y+ERVLPSI++E LKAVVAQ+NASQLITQRE VSR IR+ L  RA+ FNI LDDVSIT +TF  EFT A+EAKQ+A Q+
Sbjct:   56 NALFNVDGGHRAIVYSRIHGVSSRIFNEGTHFIFPWLDTPIIYDVRAKPRNVASLTGTKDLQMVNITCRVLSRPDVVQLPTIYRTLGQDYDERVLPSIVNEVLKAVVAQFNASQLITQREKVSRLIRENLVRRASKFNILLDDVSITYMTFSPEFTNAVEAKQIAQQD 223          
BLAST of CX295589 vs. ExPASy Swiss-Prot
Match: PHB2_CAEEL (Mitochondrial prohibitin complex protein 2 OS=Caenorhabditis elegans GN=phb-2 PE=1 SV=2)

HSP 1 Score: 217.238 bits (552), Expect = 5.995e-56
Identity = 108/172 (62.79%), Postives = 130/172 (75.58%), Query Frame = 3
Query:  153 YAATHSLYNVEGGHRAIMFNRIVGVKDKVYPEGTHLMIPWFERPVIYDVRARPNLVESTTGSHDLQMVKIGLRVLTRPVADQLPTIYRTLGENYNERVLPSIIHETLKAVVAQYNASQLITQRETVSREIRKILTERAAYFNIALDDVSITSLTFGKEFTFAIEAKQVAAQE 668
            Y    S++ VE GHRAIMFNRI G+   +Y EG H  IPWF+ P+IYD+RARPN + S TGS DLQMV IGLRVL+RP  + L  IYRTLG+N+ ERVLPSI +E LK VVA++NASQLITQR+ VS  +RK L ERA  FNI LDDVS+T L F  +++ A+EAKQVAAQE
Sbjct:   34 YGVAQSMFTVEAGHRAIMFNRIGGLSTDLYKEGLHFRIPWFQYPIIYDIRARPNQIRSPTGSKDLQMVNIGLRVLSRPNPEHLVHIYRTLGQNWEERVLPSICNEVLKGVVAKFNASQLITQRQQVSMLVRKTLIERALDFNIILDDVSLTELAFSPQYSAAVEAKQVAAQE 205          
BLAST of CX295589 vs. ExPASy Swiss-Prot
Match: PHB2_SCHPO (Prohibitin-2 OS=Schizosaccharomyces pombe GN=phb2 PE=2 SV=1)

HSP 1 Score: 215.312 bits (547), Expect = 2.278e-55
Identity = 106/172 (61.63%), Postives = 134/172 (77.91%), Query Frame = 3
Query:  153 YAATHSLYNVEGGHRAIMFNRIVGVKDKVYPEGTHLMIPWFERPVIYDVRARPNLVESTTGSHDLQMVKIGLRVLTRPVADQLPTIYRTLGENYNERVLPSIIHETLKAVVAQYNASQLITQRETVSREIRKILTERAAYFNIALDDVSITSLTFGKEFTFAIEAKQVAAQE 668
            +A   SL+NV+GGHRAI ++RI G+K+ +YPEGTH +IPW E  + YDVRA+P  + S TG+ DLQMV I  RVL+RP    LP IYRTLG +Y+ERVLPSI++E LK+VVAQ+NASQLITQRE VSR +R+ L +RAA FNI LDDVS+T + F  EFT A+EAKQ+A Q+
Sbjct:   30 FAVQTSLFNVDGGHRAIKYSRIGGIKNLIYPEGTHFLIPWIETAIDYDVRAKPRNISSLTGTKDLQMVNINCRVLSRPDVHALPKIYRTLGGDYDERVLPSIVNEVLKSVVAQFNASQLITQRERVSRLVRENLMKRAARFNILLDDVSLTHVQFSPEFTAAVEAKQIAQQD 201          
BLAST of CX295589 vs. ExPASy Swiss-Prot
Match: PHB2_RAT (Prohibitin-2 OS=Rattus norvegicus GN=Phb2 PE=1 SV=1)

HSP 1 Score: 209.534 bits (532), Expect = 1.250e-53
Identity = 106/173 (61.27%), Postives = 133/173 (76.88%), Query Frame = 3
Query:  153 YAATHSLYNVEGGHRAIMFNRIVGVK-DKVYPEGTHLMIPWFERPVIYDVRARPNLVESTTGSHDLQMVKIGLRVLTRPVADQLPTIYRTLGENYNERVLPSIIHETLKAVVAQYNASQLITQRETVSREIRKILTERAAYFNIALDDVSITSLTFGKEFTFAIEAKQVAAQE 668
            Y    S++ VEGGHRAI FNRI GV+ D +  EG H  IPWF+ P+IYD+RARP  + S TGS DLQMV I LRVL+RP A +LP++Y+ LG +Y ERVLPSI++E LK+VVA++NASQLITQR  VS  IR+ LTERA  F++ LDDV+IT L+F +E+T A+EAKQVA QE
Sbjct:   34 YGVRESVFTVEGGHRAIFFNRIGGVQQDTILAEGLHFRIPWFQYPIIYDIRARPRKISSPTGSKDLQMVNISLRVLSRPNAQELPSMYQRLGLDYEERVLPSIVNEVLKSVVAKFNASQLITQRAQVSLLIRRELTERAKDFSLILDDVAITELSFSREYTAAVEAKQVAQQE 206          
BLAST of CX295589 vs. ExPASy Swiss-Prot
Match: PHB2_PONAB (Prohibitin-2 OS=Pongo abelii GN=PHB2 PE=2 SV=1)

HSP 1 Score: 209.534 bits (532), Expect = 1.250e-53
Identity = 106/173 (61.27%), Postives = 133/173 (76.88%), Query Frame = 3
Query:  153 YAATHSLYNVEGGHRAIMFNRIVGVK-DKVYPEGTHLMIPWFERPVIYDVRARPNLVESTTGSHDLQMVKIGLRVLTRPVADQLPTIYRTLGENYNERVLPSIIHETLKAVVAQYNASQLITQRETVSREIRKILTERAAYFNIALDDVSITSLTFGKEFTFAIEAKQVAAQE 668
            Y    S++ VEGGHRAI FNRI GV+ D +  EG H  IPWF+ P+IYD+RARP  + S TGS DLQMV I LRVL+RP A +LP++Y+ LG +Y ERVLPSI++E LK+VVA++NASQLITQR  VS  IR+ LTERA  F++ LDDV+IT L+F +E+T A+EAKQVA QE
Sbjct:   34 YGVRESVFTVEGGHRAIFFNRIGGVQQDTILAEGLHFRIPWFQYPIIYDIRARPRKISSPTGSKDLQMVNISLRVLSRPNAQELPSMYQRLGLDYEERVLPSIVNEVLKSVVAKFNASQLITQRAQVSLLIRRELTERAKDFSLILDDVAITELSFSREYTAAVEAKQVAQQE 206          
BLAST of CX295589 vs. ExPASy Swiss-Prot
Match: PHB2_MOUSE (Prohibitin-2 OS=Mus musculus GN=Phb2 PE=1 SV=1)

HSP 1 Score: 209.534 bits (532), Expect = 1.250e-53
Identity = 106/173 (61.27%), Postives = 133/173 (76.88%), Query Frame = 3
Query:  153 YAATHSLYNVEGGHRAIMFNRIVGVK-DKVYPEGTHLMIPWFERPVIYDVRARPNLVESTTGSHDLQMVKIGLRVLTRPVADQLPTIYRTLGENYNERVLPSIIHETLKAVVAQYNASQLITQRETVSREIRKILTERAAYFNIALDDVSITSLTFGKEFTFAIEAKQVAAQE 668
            Y    S++ VEGGHRAI FNRI GV+ D +  EG H  IPWF+ P+IYD+RARP  + S TGS DLQMV I LRVL+RP A +LP++Y+ LG +Y ERVLPSI++E LK+VVA++NASQLITQR  VS  IR+ LTERA  F++ LDDV+IT L+F +E+T A+EAKQVA QE
Sbjct:   34 YGVRESVFTVEGGHRAIFFNRIGGVQQDTILAEGLHFRIPWFQYPIIYDIRARPRKISSPTGSKDLQMVNISLRVLSRPNAQELPSMYQRLGLDYEERVLPSIVNEVLKSVVAKFNASQLITQRAQVSLLIRRELTERAKDFSLILDDVAITELSFSREYTAAVEAKQVAQQE 206          
BLAST of CX295589 vs. ExPASy Swiss-Prot
Match: PHB2_HUMAN (Prohibitin-2 OS=Homo sapiens GN=PHB2 PE=1 SV=2)

HSP 1 Score: 209.534 bits (532), Expect = 1.250e-53
Identity = 106/173 (61.27%), Postives = 133/173 (76.88%), Query Frame = 3
Query:  153 YAATHSLYNVEGGHRAIMFNRIVGVK-DKVYPEGTHLMIPWFERPVIYDVRARPNLVESTTGSHDLQMVKIGLRVLTRPVADQLPTIYRTLGENYNERVLPSIIHETLKAVVAQYNASQLITQRETVSREIRKILTERAAYFNIALDDVSITSLTFGKEFTFAIEAKQVAAQE 668
            Y    S++ VEGGHRAI FNRI GV+ D +  EG H  IPWF+ P+IYD+RARP  + S TGS DLQMV I LRVL+RP A +LP++Y+ LG +Y ERVLPSI++E LK+VVA++NASQLITQR  VS  IR+ LTERA  F++ LDDV+IT L+F +E+T A+EAKQVA QE
Sbjct:   34 YGVRESVFTVEGGHRAIFFNRIGGVQQDTILAEGLHFRIPWFQYPIIYDIRARPRKISSPTGSKDLQMVNISLRVLSRPNAQELPSMYQRLGLDYEERVLPSIVNEVLKSVVAKFNASQLITQRAQVSLLIRRELTERAKDFSLILDDVAITELSFSREYTAAVEAKQVAQQE 206          
BLAST of CX295589 vs. ExPASy Swiss-Prot
Match: PHB2_XENTR (Prohibitin-2 OS=Xenopus tropicalis GN=phb2 PE=2 SV=1)

HSP 1 Score: 209.149 bits (531), Expect = 1.633e-53
Identity = 106/173 (61.27%), Postives = 134/173 (77.46%), Query Frame = 3
Query:  153 YAATHSLYNVEGGHRAIMFNRIVGVK-DKVYPEGTHLMIPWFERPVIYDVRARPNLVESTTGSHDLQMVKIGLRVLTRPVADQLPTIYRTLGENYNERVLPSIIHETLKAVVAQYNASQLITQRETVSREIRKILTERAAYFNIALDDVSITSLTFGKEFTFAIEAKQVAAQE 668
            YA   S++ VEGGHRAI FNRI GV+ D +  EG H   PWF+ P+IYD+RARP  + S TGS DLQMV I LRVL+RP+A +LP +Y+ LG +Y+ERVLPSI++E LK+VVA++NASQLITQR  VS  IR+ LTERA  F+I LDDV+IT L+F +E+T A+E+KQVA QE
Sbjct:   34 YAVKESVFTVEGGHRAIFFNRIGGVQQDTILAEGLHFRFPWFQYPIIYDIRARPRKISSPTGSKDLQMVNITLRVLSRPLASELPFMYQRLGLDYDERVLPSIVNEVLKSVVAKFNASQLITQRAQVSLLIRRELTERAKDFSIILDDVAITELSFSREYTAAVESKQVAQQE 206          
BLAST of CX295589 vs. ExPASy Swiss-Prot
Match: PHB_RAT (Prohibitin OS=Rattus norvegicus GN=Phb PE=1 SV=1)

HSP 1 Score: 208.379 bits (529), Expect = 2.785e-53
Identity = 104/167 (62.28%), Postives = 131/167 (78.44%), Query Frame = 3
Query:  168 SLYNVEGGHRAIMFNRIVGVKDKVYPEGTHLMIPWFERPVIYDVRARPNLVESTTGSHDLQMVKIGLRVLTRPVADQLPTIYRTLGENYNERVLPSIIHETLKAVVAQYNASQLITQRETVSREIRKILTERAAYFNIALDDVSITSLTFGKEFTFAIEAKQVAAQE 668
            +LYNV+ GHRA++F+R  GV+D V  EGTH +IPW ++P+I+D R+RP  V   TGS DLQ V I LR+L RPVA QLP IY ++GE+Y+ERVLPSI  E LK+VVA+++A +LITQRE VSR++   LTERAA F + LDDVS+T LTFGKEFT A+EAKQVA QE
Sbjct:   26 ALYNVDAGHRAVIFDRFRGVQDIVVGEGTHFLIPWVQKPIIFDCRSRPRNVPVITGSKDLQNVNITLRILFRPVASQLPRIYTSIGEDYDERVLPSITTEILKSVVARFDAGELITQRELVSRQVSDDLTERAATFGLILDDVSLTHLTFGKEFTEAVEAKQVAQQE 192          
The following BLAST results are available for this feature:
BLAST of CX295589 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 21
Match NameE-valueIdentityDescription
PHB2_DICDI2.778e-6160.98Prohibitin-2 OS=Dictyostelium discoideum GN=phbB P... [more]
PHB2_YEAST2.060e-5664.29Prohibitin-2 OS=Saccharomyces cerevisiae GN=PHB2 P... [more]
PHB2_CAEEL5.995e-5662.79Mitochondrial prohibitin complex protein 2 OS=Caen... [more]
PHB2_SCHPO2.278e-5561.63Prohibitin-2 OS=Schizosaccharomyces pombe GN=phb2 ... [more]
PHB2_RAT1.250e-5361.27Prohibitin-2 OS=Rattus norvegicus GN=Phb2 PE=1 SV=... [more]
PHB2_PONAB1.250e-5361.27Prohibitin-2 OS=Pongo abelii GN=PHB2 PE=2 SV=1[more]
PHB2_MOUSE1.250e-5361.27Prohibitin-2 OS=Mus musculus GN=Phb2 PE=1 SV=1[more]
PHB2_HUMAN1.250e-5361.27Prohibitin-2 OS=Homo sapiens GN=PHB2 PE=1 SV=2[more]
PHB2_XENTR1.633e-5361.27Prohibitin-2 OS=Xenopus tropicalis GN=phb2 PE=2 SV... [more]
PHB_RAT2.785e-5362.28Prohibitin OS=Rattus norvegicus GN=Phb PE=1 SV=1[more]

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Properties
Property NameValue
Genbank descriptionC05073G10SK DroRLeaf1 Citrus clementina cDNA clone C05073G10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX295589 ID=CX295589; Name=CX295589; organism=Citrus clementina; type=EST; length=668bp
GCGCGCTTCTCTGCCTCTGACTTGGGTGTAGGGTTTTAGCAGAGCTGTTT
CAGGAAAAAATGAACTTCAACAATGTCAAAGTTCCCAAGATGCCGGGTGG
TGGCGCAGTCTCTGCTCTAATTAAGGTGGGGGTTATTGGTGGGCTTGGTT
TGTACGCTGCTACTCATAGTCTCTACAATGTCGAGGGAGGGCATAGGGCC
ATTATGTTCAACCGCATAGTTGGTGTCAAAGATAAGGTTTATCCCGAGGG
GACGCATCTTATGATTCCATGGTTTGAGAGGCCTGTCATCTATGATGTTC
GTGCACGACCCAACTTAGTGGAGAGTACTACTGGTAGCCATGATCTTCAG
ATGGTTAAGATTGGGCTTAGGGTGCTCACTCGTCCTGTGGCTGACCAGTT
GCCTACAATTTATCGAACCCTTGGTGAGAACTACAATGAAAGGGTTCTGC
CTTCTATCATTCATGAAACTTTAAAAGCTGTGGTTGCTCAGTACAATGCC
AGCCAGCTTATCACACAGCGTGAGACTGTAAGTAGGGAAATTCGGAAGAT
TCTGACTGAGAGGGCAGCCTATTTCAACATTGCTCTGGATGATGTCTCCA
TTACGAGCCTTACTTTTGGCAAGGAATTTACATTTGCCATTGAAGCTAAA
CAGGTGGCCGCACAAGAA
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