CX295620

Overview
NameCX295620
Unique NameCX295620
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length704
Libraries
Library NameType
DroRLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CX295620_ssr295 microsatellite CX295620_ssr295:295..306. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of CX295620 vs. ExPASy Swiss-Prot
Match: ARP3_ARATH (Actin-related protein 3 OS=Arabidopsis thaliana GN=ARP3 PE=1 SV=1)

HSP 1 Score: 224.557 bits (571), Expect = 4.168e-58
Identity = 103/118 (87.29%), Postives = 111/118 (94.07%), Query Frame = 1
Query:  334 MDPTSRPAVVIDNGTGYTKMGFAGNVEPCFILPTVVAVNESFLNQSRSSSKANWLAQYNAGVMADLDFFIGDEAVTKSRSSSTYNLSYPIRHGQVDNWDAMERYWQQCIFNYLRCDPE 687
            MDPTSRPA+VIDNGTGYTKMGFAGNVEPCFILPTVVAVNESFLNQS+SSSKA W  Q+NAGV ADLDF+IGDEA+ KSRSSST+NL YPI HGQV++WDAMERYWQQCIFNYLRCDPE
Sbjct:    1 MDPTSRPAIVIDNGTGYTKMGFAGNVEPCFILPTVVAVNESFLNQSKSSSKATWQTQHNAGVAADLDFYIGDEALAKSRSSSTHNLHYPIEHGQVEDWDAMERYWQQCIFNYLRCDPE 118          
BLAST of CX295620 vs. ExPASy Swiss-Prot
Match: ARP3_ORYSJ (Actin-related protein 3 OS=Oryza sativa subsp. japonica GN=ARP3 PE=2 SV=1)

HSP 1 Score: 203.756 bits (517), Expect = 7.614e-52
Identity = 92/119 (77.31%), Postives = 109/119 (91.60%), Query Frame = 1
Query:  334 MDPTSRPAVVIDNGTGYTKMGFAGNVEPCFILPTVVAVNESFLNQSRSSS-KANWLAQYNAGVMADLDFFIGDEAVTKSRSSSTYNLSYPIRHGQVDNWDAMERYWQQCIFNYLRCDPE 687
            MD  SRPAVVIDNGTGYTKMGFAGNVEPCFI PTVVAVN++F  Q+R+++ K NW+AQ++AGVMADLDFFIG++A+ +SRSS+TYNLSYPI +GQV+NWD MER+WQQCIFNYLRCDPE
Sbjct:    1 MDAASRPAVVIDNGTGYTKMGFAGNVEPCFITPTVVAVNDTFAGQTRANTTKGNWMAQHSAGVMADLDFFIGEDALARSRSSNTYNLSYPIHNGQVENWDTMERFWQQCIFNYLRCDPE 119          
BLAST of CX295620 vs. ExPASy Swiss-Prot
Match: ARP3_ORYSI (Actin-related protein 3 OS=Oryza sativa subsp. indica GN=ARP3 PE=2 SV=2)

HSP 1 Score: 203.756 bits (517), Expect = 7.614e-52
Identity = 92/119 (77.31%), Postives = 109/119 (91.60%), Query Frame = 1
Query:  334 MDPTSRPAVVIDNGTGYTKMGFAGNVEPCFILPTVVAVNESFLNQSRSSS-KANWLAQYNAGVMADLDFFIGDEAVTKSRSSSTYNLSYPIRHGQVDNWDAMERYWQQCIFNYLRCDPE 687
            MD  SRPAVVIDNGTGYTKMGFAGNVEPCFI PTVVAVN++F  Q+R+++ K NW+AQ++AGVMADLDFFIG++A+ +SRSS+TYNLSYPI +GQV+NWD MER+WQQCIFNYLRCDPE
Sbjct:    1 MDAASRPAVVIDNGTGYTKMGFAGNVEPCFITPTVVAVNDTFAGQTRANTTKGNWMAQHSAGVMADLDFFIGEDALARSRSSNTYNLSYPIHNGQVENWDTMERFWQQCIFNYLRCDPE 119          
BLAST of CX295620 vs. ExPASy Swiss-Prot
Match: ARP3_DICDI (Actin-related protein 3 OS=Dictyostelium discoideum GN=arpC PE=1 SV=1)

HSP 1 Score: 131.339 bits (329), Expect = 4.803e-30
Identity = 62/119 (52.10%), Postives = 83/119 (69.75%), Query Frame = 1
Query:  334 MDPTSR-PAVVIDNGTGYTKMGFAGNVEPCFILPTVVAVNESFLNQSRSSSKANWLAQYNAGVMADLDFFIGDEAVTKSRSSSTYNLSYPIRHGQVDNWDAMERYWQQCIFNYLRCDPE 687
            M+P S  PAVVIDNGTGYTKMG+AGN +P FI+PT +A   S   Q+ +S K           + DLDFFIGDEA+  S+   TY+++ P++HGQ++NW  ME+YW+ C+F YLRC+PE
Sbjct:    1 MNPASGLPAVVIDNGTGYTKMGYAGNNDPSFIIPTTIATQSSKGKQTAASQKKG---------VEDLDFFIGDEAIANSK---TYDMTNPVKHGQIENWTHMEQYWEHCVFKYLRCEPE 107          
BLAST of CX295620 vs. ExPASy Swiss-Prot
Match: ARP3_CAEEL (Actin-related protein 3 OS=Caenorhabditis elegans GN=arx-1 PE=2 SV=1)

HSP 1 Score: 131.339 bits (329), Expect = 4.803e-30
Identity = 63/112 (56.25%), Postives = 81/112 (72.32%), Query Frame = 1
Query:  352 PAVVIDNGTGYTKMGFAGNVEPCFILPTVVAVNESFLNQSRSSSKANWLAQYNAGVMADLDFFIGDEAVTKSRSSSTYNLSYPIRHGQVDNWDAMERYWQQCIFNYLRCDPE 687
            PA VIDNGTGYTK+G+AGN EP FI+P+ +AV +     S +S    W  +  AG+  DLDFFIGDEA+  S +++ Y + YPIRHG V++WD MERYW+QCIF YLR +PE
Sbjct:    7 PACVIDNGTGYTKLGYAGNTEPQFIIPSAIAVKDKVA--SSNSQAMRWNNRVGAGI-DDLDFFIGDEAL--SPAATNYTVKYPIRHGIVEDWDLMERYWEQCIFKYLRAEPE 113          
BLAST of CX295620 vs. ExPASy Swiss-Prot
Match: ARP3_CAEBR (Actin-related protein 3 OS=Caenorhabditis briggsae GN=arx-1 PE=3 SV=1)

HSP 1 Score: 130.183 bits (326), Expect = 1.070e-29
Identity = 61/112 (54.46%), Postives = 79/112 (70.54%), Query Frame = 1
Query:  352 PAVVIDNGTGYTKMGFAGNVEPCFILPTVVAVNESFLNQSRSSSKANWLAQYNAGVMADLDFFIGDEAVTKSRSSSTYNLSYPIRHGQVDNWDAMERYWQQCIFNYLRCDPE 687
            PA VIDNGTGYTK+G+AGN EP FI+P+ +AV +     S ++    W  +     + DLDFFIGDEA+  S ++S Y + YPIRHG V++WD MERYW+QCIF YLR +PE
Sbjct:    7 PACVIDNGTGYTKLGYAGNTEPQFIIPSAIAVKDKVA--SSNAQALRWNNRVGGAGIDDLDFFIGDEAL--SPAASNYTVKYPIRHGIVEDWDLMERYWEQCIFKYLRAEPE 114          
BLAST of CX295620 vs. ExPASy Swiss-Prot
Match: ARP3_ACACA (Actin-related protein 3 OS=Acanthamoeba castellanii GN=ARP3 PE=2 SV=1)

HSP 1 Score: 127.872 bits (320), Expect = 5.310e-29
Identity = 60/118 (50.85%), Postives = 78/118 (66.10%), Query Frame = 1
Query:  334 MDPTSRPAVVIDNGTGYTKMGFAGNVEPCFILPTVVAVNESFLNQSRSSSKANWLAQYNAGVMADLDFFIGDEAVTKSRSSSTYNLSYPIRHGQVDNWDAMERYWQQCIFNYLRCDPE 687
            M  +  PAVVIDNGTGYTKMG+AGN EP +I+PT +A  +      R  ++  W        +ADLDFFIGDEA   S+    Y ++ P+RHGQV+NW  ME++W+ CIF YLRC+PE
Sbjct:    1 MSRSGLPAVVIDNGTGYTKMGYAGNTEPQYIIPTAIAT-KGIAEDPRCRARRWWCPWAAGKNIADLDFFIGDEAYENSK---VYQITMPVRHGQVENWTHMEQFWEHCIFKYLRCEPE 114          
BLAST of CX295620 vs. ExPASy Swiss-Prot
Match: ARP3_SCHPO (Actin-related protein 3 OS=Schizosaccharomyces pombe GN=act2 PE=1 SV=1)

HSP 1 Score: 122.865 bits (307), Expect = 1.708e-27
Identity = 56/117 (47.86%), Postives = 85/117 (72.65%), Query Frame = 1
Query:  358 VVIDNGTGYTKMGFAGNVEPCFILPTVVAVNESFLNQSRS-SSKANWLAQYNAGVMA------DLDFFIGDEAVTKSRSSSTYNLSYPIRHGQVDNWDAMERYWQQCIFNYLRCDPE 687
            +++DNGTGY+K+G+AGN  P ++ PTV+A   +  +   + SSK +++A   +G ++      DLDFFIG++A+ K+  S+ Y+L YPIRHGQ++NWD MER+WQQ +F YLRC+PE
Sbjct:    8 IIMDNGTGYSKLGYAGNDAPSYVFPTVIATRSAGASSGPAVSSKPSYMASKGSGHLSSKRATEDLDFFIGNDALKKA--SAGYSLDYPIRHGQIENWDHMERFWQQSLFKYLRCEPE 122          
BLAST of CX295620 vs. ExPASy Swiss-Prot
Match: ARP3_YEAST (Actin-related protein 3 OS=Saccharomyces cerevisiae GN=ARP3 PE=1 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 1.496e-23
Identity = 64/145 (44.14%), Postives = 84/145 (57.93%), Query Frame = 1
Query:  334 MDPTSRPAVVIDNGTGYTKMGFAGNVEPCFILPTVVAV-------------------NE-SFLNQSRSSSKANW-----LAQYNAGVMA--DLDFFIGDEAVTKSRSSSTYNLSYPIRHGQVDNWDAMERYWQQCIFNYLRCDPE 687
            M   + PAVV+DNGTG TK+GFAGN  P ++ PT +A                    NE S+   S S++  N      L+   +G     DLDF+IG+EA+  S+  S Y+LSYPIRHGQV+NWD MER+W+  IF YLR +PE
Sbjct:    1 MSYLNNPAVVMDNGTGLTKLGFAGNDSPSWVFPTAIATAAPSNTKKSSGVGAPSAVSNEASYFGNSTSATNFNGATGGLLSNNLSGKRGTEDLDFYIGNEALVASQGPS-YSLSYPIRHGQVENWDHMERFWENSIFKYLRTEPE 144          
BLAST of CX295620 vs. ExPASy Swiss-Prot
Match: ARP3_NEUCR (Actin-related protein 3 OS=Neurospora crassa GN=arp-3 PE=2 SV=2)

HSP 1 Score: 109.383 bits (272), Expect = 1.954e-23
Identity = 58/127 (45.67%), Postives = 71/127 (55.91%), Query Frame = 1
Query:  352 PAVVIDNGTGYTKMGFAGNVEPCFILPTVVAVNESFLNQSRSSSK----ANWLAQYNAGV-----------MADLDFFIGDEAVTKSRSSSTYNLSYPIRHGQVDNWDAMERYWQQCIFNYLRCDPE 687
            PAVV+DNGTG++K+GFAGN  P F+ PT +A          S S     AN  +    G              DLD+FIGDEAV  +     Y L YPIRHGQ++NWD MER+W   IF YLR +PE
Sbjct:    6 PAVVMDNGTGFSKLGFAGNDSPSFVFPTAIATKSPSAGTGGSGSGRPAVANKPSFLTGGAGPGGHLSAKRGTEDLDYFIGDEAVAAANGPG-YGLHYPIRHGQIENWDHMERFWSNSIFKYLRVEPE 131          
The following BLAST results are available for this feature:
BLAST of CX295620 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 280
Match NameE-valueIdentityDescription
ARP3_ARATH4.168e-5887.29Actin-related protein 3 OS=Arabidopsis thaliana GN... [more]
ARP3_ORYSJ7.614e-5277.31Actin-related protein 3 OS=Oryza sativa subsp. jap... [more]
ARP3_ORYSI7.614e-5277.31Actin-related protein 3 OS=Oryza sativa subsp. ind... [more]
ARP3_DICDI4.803e-3052.10Actin-related protein 3 OS=Dictyostelium discoideu... [more]
ARP3_CAEEL4.803e-3056.25Actin-related protein 3 OS=Caenorhabditis elegans ... [more]
ARP3_CAEBR1.070e-2954.46Actin-related protein 3 OS=Caenorhabditis briggsae... [more]
ARP3_ACACA5.310e-2950.85Actin-related protein 3 OS=Acanthamoeba castellani... [more]
ARP3_SCHPO1.708e-2747.86Actin-related protein 3 OS=Schizosaccharomyces pom... [more]
ARP3_YEAST1.496e-2344.14Actin-related protein 3 OS=Saccharomyces cerevisia... [more]
ARP3_NEUCR1.954e-2345.67Actin-related protein 3 OS=Neurospora crassa GN=ar... [more]

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Properties
Property NameValue
Genbank descriptionC05074B05SK DroRLeaf1 Citrus clementina cDNA clone C05074B05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX295620 ID=CX295620; Name=CX295620; organism=Citrus clementina; type=EST; length=704bp
GAGGGGAAACAGAGAGGGAGAAAAAAAAAAGAAAAAAAAAAGAAAGAGGA
AAATGAAAAGACAGTGATAGCAATGATGAAGAAGTTGATGAGAGAGGCTT
ATCATTTCCATTATCGATGTTGTTGTTGAAATGGGTGTTGGATTTTGTAC
CAACTTACAAAGCTGCCGTGCGTTGAGTCGCTCCTTTCACTTGCGATTCA
AGTCTTTCGTATATCACCATCACCAACACTTTCTTCACGATCATGTTCCA
TTGCCTTAACCCTTCTCTCGGATCTCAGTTGCGGATCCCTCGTTACCACC
ACCACCACGATTCTCACCTCCTTTCTCTTTACAATGGACCCCACTTCTCG
TCCTGCCGTCGTCATCGACAACGGCACCGGGTATACTAAGATGGGTTTTG
CGGGTAATGTAGAGCCGTGTTTTATTCTTCCGACTGTAGTAGCTGTAAAC
GAGTCGTTTTTAAATCAATCAAGATCTTCGTCAAAGGCCAATTGGCTTGC
ACAGTACAACGCAGGCGTAATGGCCGACCTTGACTTCTTTATTGGAGATG
AAGCAGTCACAAAATCGCGATCTAGTAGTACCTATAACCTTAGTTATCCT
ATTAGGCATGGTCAGGTTGATAATTGGGATGCTATGGAGAGGTATTGGCA
GCAGTGTATATTTAATTACTTGCGTTGTGATCCAGAGATCACTACTTTCT
GTTG
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