CX295627

Overview
NameCX295627
Unique NameCX295627
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length715
Libraries
Library NameType
DroRLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig9885 contig Ccv1_Contig9885:44..758. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX295627 vs. ExPASy Swiss-Prot
Match: VDAC2_SOLTU (Mitochondrial outer membrane protein porin of 36 kDa OS=Solanum tuberosum PE=1 SV=2)

HSP 1 Score: 341.658 bits (875), Expect = 2.368e-93
Identity = 167/212 (78.77%), Postives = 189/212 (89.15%), Query Frame = 3
Query:   48 MVKGPGLYSEIGKKARDLLYKDYQSDHKFTVTTYTSAGVAITSSGVKKGELFLADVSTQLKNKNITTDVKVDTNSNLFTTITVDEPAPGLKSIFSFIVPDQRSGKVELQYQHEYAGISTGIGFTANPIXXXXXXXXXXXXALGTDLSFDTATGNFTKCNAGLSYTHTDLIASLTLNDKGDTLNASYYHIVSPLTNTAVGAELTHSFSSTRHS 683
            MVKGPGLYS+IGKKARDLLY+DY SDHKFTVTTY++ GVAIT+SG+KKGELFLADVSTQLKNKNITTDVKVDTNSN++TTITVDEPAPGLK+IFSF+VPDQ+SGKVELQY HEYAGI+T IG TA+P+            ALGTDLSFDTATGNFTKCNAGLS++ +DLIASL LNDKGDT++ASYYH V P+TNTAVGAELTHSFSS  ++
Sbjct:    1 MVKGPGLYSDIGKKARDLLYRDYVSDHKFTVTTYSTTGVAITASGLKKGELFLADVSTQLKNKNITTDVKVDTNSNVYTTITVDEPAPGLKTIFSFVVPDQKSGKVELQYLHEYAGINTSIGLTASPLVNFSGVAGNNTVALGTDLSFDTATGNFTKCNAGLSFSSSDLIASLALNDKGDTVSASYYHTVKPVTNTAVGAELTHSFSSNENT 212          
BLAST of CX295627 vs. ExPASy Swiss-Prot
Match: VDAC1_SOLTU (Mitochondrial outer membrane protein porin of 34 kDa OS=Solanum tuberosum PE=1 SV=2)

HSP 1 Score: 318.931 bits (816), Expect = 1.644e-86
Identity = 155/211 (73.46%), Postives = 178/211 (84.36%), Query Frame = 3
Query:   48 MVKGPGLYSEIGKKARDLLYKDYQSDHKFTVTTYTSAGVAITSSGVKKGELFLADVSTQLKNKNITTDVKVDTNSNLFTTITVDEPAPGLKSIFSFIVPDQRSGKVELQYQHEYAGISTGIGFTANPIXXXXXXXXXXXXALGTDLSFDTATGNFTKCNAGLSYTHTDLIASLTLNDKGDTLNASYYHIVSPLTNTAVGAELTHSFSSTRH 680
            M KGPGLY+EIGKKARDLLYKDYQSDHKF++TTY+  GV ITSSG KKG+LFLADV+TQLKNKN+TTD+KVDTNSNLFTTITVDE APGLK+I SF VPDQRSGK+E+QY H+YAGI T +G TANPI            ALGTD+SFDT TG+FTKCNAGLS+T+ DL+ASL LN+KGD L ASYYH VSPLT+TAVGAE+ HSFS+  +
Sbjct:    1 MGKGPGLYTEIGKKARDLLYKDYQSDHKFSITTYSPTGVVITSSGSKKGDLFLADVNTQLKNKNVTTDIKVDTNSNLFTTITVDEAAPGLKTILSFRVPDQRSGKLEVQYLHDYAGICTSVGLTANPIVNFSGVVGTNIIALGTDVSFDTKTGDFTKCNAGLSFTNADLVASLNLNNKGDNLTASYYHTVSPLTSTAVGAEVNHSFSTNEN 211          
BLAST of CX295627 vs. ExPASy Swiss-Prot
Match: VDAC_PEA (Outer plastidial membrane protein porin OS=Pisum sativum GN=POR1 PE=1 SV=2)

HSP 1 Score: 291.582 bits (745), Expect = 2.811e-78
Identity = 141/212 (66.51%), Postives = 169/212 (79.72%), Query Frame = 3
Query:   48 MVKGPGLYSEIGKKARDLLYKDYQSDHKFTVTTYTSAGVAITSSGVKKGELFLADVSTQLKNKNITTDVKVDTNSNLFTTITVDEPAPGLKSIFSFIVPDQRSGKVELQYQHEYAGISTGIGFTANPIXXXXXXXXXXXXALGTDLSFDTATGNFTKCNAGLSYTHTDLIASLTLNDKGDTLNASYYHIVSPLTNTAVGAELTHSFSSTRHS 683
            MVKGPGLY++IGKKARDLLYKDY SD KFT++TY+  GVAITSSG KKGELFL DV+TQLKNKNITTD+KVDTNSNLFTTITV+EPAPG+K+I SF VP+Q SGKVELQY HEYAGIS+ +G  ANPI            A G D+SFDT  G  TK NA +++   DLI SLTLN+KGD L+ASYYH ++PL+NTAVG +++H FS+  ++
Sbjct:    1 MVKGPGLYTDIGKKARDLLYKDYHSDKKFTISTYSPTGVAITSSGTKKGELFLGDVNTQLKNKNITTDIKVDTNSNLFTTITVNEPAPGVKAILSFKVPEQTSGKVELQYLHEYAGISSSVGLKANPIVNFSSVIGTNALAFGADISFDTKLGELTKSNAAVNFVKDDLIGSLTLNEKGDLLSASYYHAINPLSNTAVGVDISHRFSTKENT 212          
BLAST of CX295627 vs. ExPASy Swiss-Prot
Match: VDAC1_ARATH (Mitochondrial outer membrane protein porin 1 OS=Arabidopsis thaliana GN=At3g01280 PE=1 SV=3)

HSP 1 Score: 285.034 bits (728), Expect = 2.631e-76
Identity = 143/208 (68.75%), Postives = 165/208 (79.33%), Query Frame = 3
Query:   48 MVKGPGLYSEIGKKARDLLYKDYQSDHKFTVTTYTSAGVAITSSGVKKGELFLADVSTQLKNKNITTDVKVDTNSNLFTTITVDEPAPGLKSIFSFIVPDQRSGKVELQYQHEYAGISTGIGFTANPIXXXXXXXXXXXXALGTDLSFDTATGNFTKCNAGLSYTHTDLIASLTLNDKGDTLNASYYHIVSPLTNTAVGAELTHSFSS 671
            MVKGPGLY+EIGKKARDLLYKD+ SD KF++TT++ AGVAITS+G KKG+L L DV+ Q + KNITTD+KV T+S    T TVDE APGL+SIFSF VPDQ SGKVELQY HEYAGIST +G T NP             A+GTD+SFDT +GNFTK NAGLS+T  DLIASLT+NDKGD LNASYYHIV+PL NTAVGAE++H  SS
Sbjct:    1 MVKGPGLYTEIGKKARDLLYKDHNSDQKFSITTFSPAGVAITSTGTKKGDLLLGDVAFQSRRKNITTDLKVCTDSTFLITATVDEAAPGLRSIFSFKVPDQNSGKVELQYLHEYAGISTSMGLTQNPTVNFSGVIGSNVLAVGTDVSFDTKSGNFTKINAGLSFTKEDLIASLTVNDKGDLLNASYYHIVNPLFNTAVGAEVSHKLSS 208          
BLAST of CX295627 vs. ExPASy Swiss-Prot
Match: VDAC1_ORYSJ (Mitochondrial outer membrane protein porin OS=Oryza sativa subsp. japonica GN=VDAC1 PE=1 SV=3)

HSP 1 Score: 273.092 bits (697), Expect = 1.035e-72
Identity = 135/209 (64.59%), Postives = 164/209 (78.47%), Query Frame = 3
Query:   57 GPGLYSEIGKKARDLLYKDYQSDHKFTVTTYTSAGVAITSSGVKKGELFLADVSTQLKNKNITTDVKVDTNSNLFTTITVDEPAPGLKSIFSFIVPDQRSGKVELQYQHEYAGISTGIGFTANPIXXXXXXXXXXXXALGTDLSFDTATGNFTKCNAGLSYTHTDLIASLTLNDKGDTLNASYYHIVSPLTNTAVGAELTHSFSSTRHS 683
            GPGLY EIGKKARDLLY+DYQ+DHKFT+TTYTS GVAIT++  KK +L   ++ +Q+KNKNIT DVK +++SN+ TT+TVDE  PGLKSI SF VPDQRSGK ELQY H+YAG+S  IG TA+P+            A+G D+S DTATGN TK NAGLS+++ DLIASL LN+KGD+L ASYYHIV+  + TAVGAELTHSFSS  +S
Sbjct:    3 GPGLYPEIGKKARDLLYRDYQTDHKFTLTTYTSNGVAITATSTKKADLIFGEIQSQIKNKNITVDVKANSDSNVVTTVTVDELTPGLKSILSFAVPDQRSGKFELQYSHDYAGVSASIGLTASPVVNLSSVFGTKALAVGADVSLDTATGNLTKYNAGLSFSNDDLIASLNLNNKGDSLTASYYHIVNH-SATAVGAELTHSFSSNENS 210          
BLAST of CX295627 vs. ExPASy Swiss-Prot
Match: VDAC2_ARATH (Mitochondrial outer membrane protein porin 2 OS=Arabidopsis thaliana GN=HSR2 PE=1 SV=3)

HSP 1 Score: 260.766 bits (665), Expect = 5.313e-69
Identity = 128/212 (60.38%), Postives = 161/212 (75.94%), Query Frame = 3
Query:   48 MVKGPGLYSEIGKKARDLLYKDYQSDHKFTVTTYTSAGVAITSSGVKKGELFLADVSTQLKNKNITTDVKVDTNSNLFTTITVDEPAPGLKSIFSFIVPDQRSGKVELQYQHEYAGISTGIGFTANPIXXXXXXXXXXXXALGTDLSFDTATGNFTKCNAGLSYTHTDLIASLTLNDKGDTLNASYYHIVSPLTNTAVGAELTHSFSSTRHS 683
            MVKGPGLY+EIGKKARDLLY+DYQ D KF+VTTY+S GVAIT++G  KG LFL DV+TQ+KN N T DVKV T+S+L TT+T DEPAPGLK I    +PD +SGK E+QY H+YAGIST +GFTA PI            +LGTD++++T +GNF   NAG ++T  DL ASL LNDKG+ LNASYY IVSP  +T VGAE++H+F++  ++
Sbjct:    1 MVKGPGLYTEIGKKARDLLYRDYQGDQKFSVTTYSSTGVAITTTGTNKGSLFLGDVATQVKNNNFTADVKVSTDSSLLTTLTFDEPAPGLKVIVQAKLPDHKSGKAEVQYFHDYAGISTSVGFTATPIVNFSGVVGTNGLSLGTDVAYNTESGNFKHFNAGFNFTKDDLTASLILNDKGEKLNASYYQIVSP--STVVGAEISHNFTTKENA 210          
BLAST of CX295627 vs. ExPASy Swiss-Prot
Match: VDAC1_WHEAT (Mitochondrial outer membrane porin OS=Triticum aestivum GN=VDAC1 PE=2 SV=1)

HSP 1 Score: 260.766 bits (665), Expect = 5.313e-69
Identity = 132/210 (62.86%), Postives = 161/210 (76.67%), Query Frame = 3
Query:   57 GPGLYSEIGKKARDLLYKDYQSDHKFTVTTYTSAGVAITSSGVKKGELFLADVSTQLKNKNITTDVKVDTNSNLFTTITVDE-PAPGLKSIFSFIVPDQRSGKVELQYQHEYAGISTGIGFTANPIXXXXXXXXXXXXALGTDLSFDTATGNFTKCNAGLSYTHTDLIASLTLNDKGDTLNASYYHIVSPLTNTAVGAELTHSFSSTRHS 683
            GPGLYS IGKKA+DLLY+DYQ+DHKFT+TTYT+ G AIT++  KK +L + ++ +Q+KNKNIT DVK ++ SN+ TTIT D+  APGLK+I SF VPDQ+SGKVELQY H+YAGI+  IG TANP+            A+G D+S DTAT NF K NA LSYT+ DLIASL LN+KGD+L ASYYHIV   + TAVGAELTHSFSS  +S
Sbjct:    3 GPGLYSGIGKKAKDLLYRDYQTDHKFTLTTYTANGPAITATSTKKADLTVGEIQSQIKNKNITVDVKANSASNVITTITADDLAAPGLKTILSFAVPDQKSGKVELQYLHDYAGINASIGLTANPVVNLSGAFGTSALAVGADVSLDTATKNFAKYNAALSYTNQDLIASLNLNNKGDSLTASYYHIVEK-SGTAVGAELTHSFSSNENS 211          
BLAST of CX295627 vs. ExPASy Swiss-Prot
Match: VDAC_MAIZE (Outer plastidial membrane protein porin OS=Zea mays GN=POR1 PE=2 SV=1)

HSP 1 Score: 228.409 bits (581), Expect = 2.922e-59
Identity = 116/208 (55.77%), Postives = 147/208 (70.67%), Query Frame = 3
Query:   48 MVKGPGLYSEIGKKARDLLYKDYQSDHKFTVTTYTSAGVAITSSGVKKGELFLADVSTQLKNKNITTDVKVDTNSNLFTTITVDE-PAPGLKSIFSFIVPDQRSGKVELQYQHEYAGISTGIGFTANPIXXXXXXXXXXXXALGTDLSFDTATGNFTKCNAGLSYTHTDLIASLTLNDKGDTLNASYYHIVSPLTNTAVGAELTHSFS 668
            MV   GLY++IGKK RDLLYKDY +  KF +TT +  GVAIT++G +K E    ++ TQ+KNK +T DVK ++ S+L TTITVDE   PGLKSI + +VPDQRSGK+E QY HEYAG++  +G  +NP+            ++G D+SFDTAT +FTK NA LS T  DLIASL LN+ GDTL ASYYH+V   + TAVGAEL+HS S
Sbjct:    1 MVVAVGLYTDIGKKTRDLLYKDYNTHQKFCLTTSSPNGVAITAAGTRKNESIFGELHTQIKNKKLTVDVKANSESDLLTTITVDEFGTPGLKSIINLVVPDQRSGKLEFQYLHEYAGVNASVGLNSNPMVNLSGAFGSKALSVGVDVSFDTATSDFTKYNAALSLTSPDLIASLHLNNHGDTLVASYYHLVKNHSGTAVGAELSHSMS 208          
BLAST of CX295627 vs. ExPASy Swiss-Prot
Match: VDAC2_XENLA (Voltage-dependent anion-selective channel protein 2 OS=Xenopus laevis GN=vdac2 PE=1 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 3.166e-13
Identity = 65/216 (30.09%), Postives = 93/216 (43.06%), Query Frame = 3
Query:   60 PGLYSEIGKKARDLLYKDYQSDH-KFTVTTYTSAGVAITSSGVKKGELFLADVSTQLKNK----NITTDVKVDTNSNLFTTITV-DEPAPGLKSIFSFIVPD---QRSGKVELQYQHEYAGISTGIGFT-ANPIXXXXXXXXXXXXALGTDLSFDTATGNFTKCNAGLSYTHTDLIASLTLNDKGDTLNASYYHIVSPLTNTAVGAELTHSFSSTR 677
            P  Y+++GK ARD+  K Y     K  V T ++ GV  T+SG    +    + S + K K     +T   K +T++ L T I + D+ A GLK  F         ++SGKV+  Y+ EY  +   + F  A P               G  ++FD+A    TK N  + Y   D      +ND G     S Y  VS    TAV    T   +STR
Sbjct:    3 PPSYADLGKSARDIFNKGYGFGLVKLDVKTKSATGVEFTTSGTSNTDSGKVNGSLETKYKWGEYGLTFTEKWNTDNTLGTEIAIEDQIAKGLKLTFDTTFSPNTGKKSGKVKAAYKQEYVNLGCDVDFDFAGPAIHGSAVVGYEGWLAGYQMTFDSAKSKLTKNNFAVGYKTGDFQLHTNVND-GSEFAGSIYQKVSDKMETAVNLAWTSGNNSTR 217          
BLAST of CX295627 vs. ExPASy Swiss-Prot
Match: VDAC2_MELGA (Voltage-dependent anion-selective channel protein 2 OS=Meleagris gallopavo GN=VDAC2 PE=1 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.330e-11
Identity = 62/216 (28.70%), Postives = 93/216 (43.06%), Query Frame = 3
Query:   60 PGLYSEIGKKARDLLYKDYQSD-HKFTVTTYTSAGVAITSSGVKKGELFLADVSTQLKNK----NITTDVKVDTNSNLFTTITV-DEPAPGLKSIFSFIV---PDQRSGKVELQYQHEYAGISTGIGFT-ANPIXXXXXXXXXXXXALGTDLSFDTATGNFTKCNAGLSYTHTDLIASLTLNDKGDTLNASYYHIVSPLTNTAVGAELTHSFSSTR 677
            P  Y+++GK ARD+  K Y     K  V T +++GV  T+SG    +    + S + K K     +T   K +T++ L T I + D+ A GLK  F         ++SGK++  Y+ E   +   + F  A P               G  ++FD+A    T+ N  + Y   D      +ND G     S Y  VS    TAV    T   +STR
Sbjct:    3 PPSYADLGKSARDIFNKGYGFGLVKLDVKTKSASGVEFTTSGSSNTDTGKVNGSLETKYKWAEYGLTFTEKWNTDNTLGTEIAIEDQIAKGLKLTFDTTFSPNTGKKSGKIKSAYKRECLNLGCDVDFDFAGPAIHGSAVFGYEGWLAGYQMTFDSAKSKLTRNNFSVGYKTGDFQLHTNVND-GSEFGGSIYQKVSDNLETAVNLAWTAGSNSTR 217          
The following BLAST results are available for this feature:
BLAST of CX295627 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 10
Match NameE-valueIdentityDescription
VDAC2_SOLTU2.368e-9378.77Mitochondrial outer membrane protein porin of 36 k... [more]
VDAC1_SOLTU1.644e-8673.46Mitochondrial outer membrane protein porin of 34 k... [more]
VDAC_PEA2.811e-7866.51Outer plastidial membrane protein porin OS=Pisum s... [more]
VDAC1_ARATH2.631e-7668.75Mitochondrial outer membrane protein porin 1 OS=Ar... [more]
VDAC1_ORYSJ1.035e-7264.59Mitochondrial outer membrane protein porin OS=Oryz... [more]
VDAC2_ARATH5.313e-6960.38Mitochondrial outer membrane protein porin 2 OS=Ar... [more]
VDAC1_WHEAT5.313e-6962.86Mitochondrial outer membrane porin OS=Triticum aes... [more]
VDAC_MAIZE2.922e-5955.77Outer plastidial membrane protein porin OS=Zea may... [more]
VDAC2_XENLA3.166e-1330.09Voltage-dependent anion-selective channel protein ... [more]
VDAC2_MELGA1.330e-1128.70Voltage-dependent anion-selective channel protein ... [more]
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Properties
Property NameValue
Genbank descriptionC05074B12SK DroRLeaf1 Citrus clementina cDNA clone C05074B12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX295627 ID=CX295627; Name=CX295627; organism=Citrus clementina; type=EST; length=715bp
AAAACTGATATTTCTCAGCGTTTCCTTTCCATTTTCTCTGGAGAATCATG
GTGAAAGGCCCCGGGCTCTACTCTGAAATCGGCAAGAAAGCCCGAGATCT
TCTCTACAAGGACTACCAGAGCGACCACAAGTTCACTGTCACTACTTACA
CGTCAGCTGGAGTCGCGATAACTTCGAGTGGTGTTAAGAAAGGTGAGCTT
TTTTTGGCTGATGTCAGCACTCAGTTGAAGAACAAGAACATCACTACTGA
TGTTAAAGTTGATACTAACTCTAATCTTTTTACAACCATCACTGTCGATG
AGCCTGCTCCTGGACTCAAGTCAATCTTTAGCTTTATCGTTCCTGATCAG
AGATCTGGCAAGGTGGAACTCCAATATCAGCATGAATATGCTGGAATAAG
CACTGGCATTGGATTCACTGCAAATCCCATTGTTAACTTTTCTGGTGTGG
TTGGAAACAATTCTGTTGCTCTTGGGACTGATCTCTCATTTGATACTGCC
ACTGGCAACTTCACCAAGTGCAATGCGGGGCTGAGCTATACACATACTGA
CCTCATTGCTTCCCTGACATTGAATGACAAAGGTGACACCCTTAATGCTT
CCTACTACCACATTGTAAGCCCACTGACCAATACCGCTGTTGGGGCGGAG
CTGACCCATAGCTTTTCAAGCACGAGACACTCTGACATCGGACTCACATG
CTCTGATCTTTGACT
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