CX295640

Overview
NameCX295640
Unique NameCX295640
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length713
Libraries
Library NameType
DroRLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig1028 contig Ccv1_Contig1028:5..717. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CX295640 vs. ExPASy Swiss-Prot
Match: RM24_YEAST (54S ribosomal protein L24, mitochondrial OS=Saccharomyces cerevisiae GN=MRPL24 PE=1 SV=2)

HSP 1 Score: 73.1738 bits (178), Expect = 1.571e-12
Identity = 44/131 (33.59%), Postives = 67/131 (51.15%), Query Frame = 1 
Query:  112 RKVGGEKNLAPGVKESL-----KKCVPDSRI----VMNRAKRGLFAGKHIQFGNRVSEDGGNKTRRNWKPNVQEKRLFSYIMDRHIRVKVTTHALRCIDKAGGIDEYLLKTPYHKMDTEMGLYWKTKIEKL 477
            RK+  + N   G  + L     +K  PD +     +  ++ +GL+ G  +QFGN +SE    KTR+ W PNV +K L+S  ++R I +K+T   L+ I K GGID YL K    ++       WK +   L
Sbjct:   30 RKIAKQPNYQVGDAKPLHMPKERKKFPDYKYGESNIFKQSNKGLYGGSFVQFGNNISESKA-KTRKKWLPNVVKKGLWSETLNRKISIKMTAKVLKTISKEGGIDNYLTKEKSARIKELGPTGWKLRYRVL 159
[Close]
BLAST of CX295640 vs. ExPASy Swiss-Prot
Match: RL28_MAGSM (50S ribosomal protein L28 OS=Magnetococcus sp. (strain MC-1) GN=rpmB PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 5.054e-11
Identity = 33/71 (46.48%), Postives = 46/71 (64.79%), Query Frame = 1 
Query:  202 AKRGLFAGKHIQFGNRVSEDGGNKTRRNWKPNVQEKRLFSYIMDRHIRVKVTTHALRCIDKAGGIDEYLLK 414
            A++    GK  Q GN+VS     KTRR W PN+Q K L+S  + + ++V ++T ALR +D AGG+D YLLK
Sbjct:    2 ARKRTLGGKAPQAGNKVSHSQ-RKTRRQWMPNIQTKALWSITLGQSVKVTISTSALRSVDNAGGLDNYLLK 71
The following BLAST results are available for this feature:
BLAST of CX295640 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
RM24_YEAST1.571e-1233.5954S ribosomal protein L24, mitochondrial OS=Saccha... [more]
RL28_MAGSM5.054e-1146.4850S ribosomal protein L28 OS=Magnetococcus sp. (st... [more]
back to top
Properties
Property NameValue
Genbank descriptionC05074D01SK DroRLeaf1 Citrus clementina cDNA clone C05074D01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX295640 ID=CX295640; Name=CX295640; organism=Citrus clementina; type=EST; length=713bp
ACGAGGCAGAGCTAGAGTGCAGTTTTAACGAAAAACTAGAATCGCAAAGA
AGAGAAGTAGTCATTACACGATATGGCGTTTCGAGGGAAGGAGATGATGA
AGAAACTAGTGAGGAAGGTAGGGGGAGAGAAGAACTTGGCTCCGGGAGTA
AAAGAATCTCTTAAGAAATGTGTACCCGACAGCAGGATCGTCATGAACCG
AGCCAAACGCGGTCTCTTCGCTGGCAAACACATCCAGTTCGGCAATCGCG
TCAGCGAAGATGGCGGTAACAAGACTAGGAGGAATTGGAAGCCAAATGTC
CAGGAGAAGCGGCTATTTAGTTATATAATGGATCGTCACATTAGAGTCAA
AGTCACAACACATGCACTCCGCTGCATTGACAAGGCAGGGGGGATCGATG
AATACCTGCTAAAGACCCCTTACCACAAGATGGACACAGAAATGGGTCTT
TACTGGAAGACCAAGATTGAGAAGCTTTATGAAGAACTTGGGCAGACGGA
AGTGGCATTCTTTACACCTGAGGAAGAAGCCAAGCTGGAACAGGACTTTA
AAGACATGAAACTCGCTCAGAGAGCCGCACGTAGGGAACTCAGAAGACAG
ATGTATGGAGGGTCAAGCAAACAGAAACAAATTGAGCAAGGAAGTGCAGA
TACCCAGGAAACTGCTGAGGAAGCAGCAAAAATCCTCAGTGAAGGAATTC
CAACGAGTATGCT
back to top