CX295650

Overview
NameCX295650
Unique NameCX295650
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length410
Libraries
Library NameType
DroRLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig12217 contig Ccv1_Contig12217:369..778. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX295650 vs. ExPASy Swiss-Prot
Match: RH22_ARATH (DEAD-box ATP-dependent RNA helicase 22 OS=Arabidopsis thaliana GN=RH22 PE=2 SV=1)

HSP 1 Score: 149.058 bits (375), Expect = 6.761e-36
Identity = 72/124 (58.06%), Postives = 92/124 (74.19%), Query Frame = 2
Query:    2 VTWKSLGLSDLLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLIEKLCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRMANALSADNGEPLVRAVAVCGGQ 373
            V+WKSLGLSD +  AL +SGF RPS+ QA  +  +LSGKDV++AAETGSGKTH YL P+I++L     DSE +N ++ P P +  SL+LCPNV+LCEQVVRM N L  ++G PL+R  AVCG Q
Sbjct:   80 VSWKSLGLSDNVSIALRDSGFDRPSLTQAVCIPSILSGKDVIVAAETGSGKTHGYLAPIIDQLTNTALDSEVTNREERPFPLKNISLILCPNVMLCEQVVRMVNGLVDEDGNPLLRVEAVCGSQ 203          
BLAST of CX295650 vs. ExPASy Swiss-Prot
Match: RH22_ORYSJ (DEAD-box ATP-dependent RNA helicase 22 OS=Oryza sativa subsp. japonica GN=Os09g0383400 PE=2 SV=2)

HSP 1 Score: 140.584 bits (353), Expect = 2.405e-33
Identity = 71/121 (58.68%), Postives = 89/121 (73.55%), Query Frame = 2
Query:    5 TWKSLGLSDLLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLIEKLCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRMANALSADNGEPLVRAVAVCG 367
            +W+SLG+SD L  AL  +G  RPS+VQAA +  VL+  DV++AAETGSGKTH YLVPLIEKLC+    +E+ NS    +     +LVLCPNV+LCEQVVRMAN+L  ++GEPL  A AVCG
Sbjct:   83 SWESLGVSDRLASALHGAGLARPSLVQAACIPHVLTTNDVIVAAETGSGKTHGYLVPLIEKLCSKSISAEDGNSQDVTSGSPNIALVLCPNVMLCEQVVRMANSLVDESGEPLKSAAAVCG 203          
BLAST of CX295650 vs. ExPASy Swiss-Prot
Match: RH16_ARATH (DEAD-box ATP-dependent RNA helicase 16 OS=Arabidopsis thaliana GN=RH16 PE=2 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 2.117e-13
Identity = 42/105 (40.00%), Postives = 67/105 (63.81%), Query Frame = 2
Query:    5 TWKSLGLSDLLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLIEKLCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRMANAL 319
            +++ LGL   LIRAL   G  +P+++Q +++  +L GKDVV  A+TGSGKT +YL+PL++KL +A     +S S K+  P    + +L P+  LC+QV    ++L
Sbjct:   47 SFEELGLDSRLIRALTKKGIEKPTLIQQSAIPYILEGKDVVARAKTGSGKTLAYLLPLLQKLFSA-----DSVSKKKLAP---SAFILVPSRELCQQVYTEVSSL 143          
BLAST of CX295650 vs. ExPASy Swiss-Prot
Match: DDX56_DICDI (Probable ATP-dependent RNA helicase ddx56 OS=Dictyostelium discoideum GN=ddx56 PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 3.610e-13
Identity = 43/106 (40.57%), Postives = 63/106 (59.43%), Query Frame = 2
Query:    5 TWKSLGLSDLLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLIEKLCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRMANALS 322
            T++S+GL + ++RAL+  GF  PS+VQ+ S+   L GKD++  A TGSGKT +Y +P+I+K+  A    E SN           ++VL P   LCEQV    N +S
Sbjct:   24 TFESMGLDNRILRALKKMGFQNPSLVQSKSIPLSLQGKDILAKARTGSGKTAAYSIPIIQKVLMA---KEKSNI------KGVKAVVLVPTRELCEQVKNHFNQVS 120          
BLAST of CX295650 vs. ExPASy Swiss-Prot
Match: RH50_ARATH (DEAD-box ATP-dependent RNA helicase 50 OS=Arabidopsis thaliana GN=RH50 PE=2 SV=2)

HSP 1 Score: 72.0182 bits (175), Expect = 1.050e-12
Identity = 44/122 (36.07%), Postives = 68/122 (55.74%), Query Frame = 2
Query:    5 TWKSLGLSDLLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLIEKLCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRMANALSADNGEPLVRAVAVCGG 370
            T+  +G S+ +++AL+   F RP+ +QA +  PV+ GK  +IA ++GSGKT +YLVP+I++L     +    +S   P  PR   +VL P   L  QV  +AN  S        R++ V GG
Sbjct:  375 TFAEIGCSEDMMKALKEQNFDRPAHIQAMAFSPVIDGKSCIIADQSGSGKTLAYLVPVIQRL---REEELQGHSKSSPGCPRV--IVLVPTAELASQV--LANCRSISKSGVPFRSMVVTGG 489          
BLAST of CX295650 vs. ExPASy Swiss-Prot
Match: RH39_ORYSJ (DEAD-box ATP-dependent RNA helicase 39 OS=Oryza sativa subsp. japonica GN=Os01g0184500 PE=2 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 3.992e-12
Identity = 41/106 (38.68%), Postives = 62/106 (58.49%), Query Frame = 2
Query:    5 TWKSLGLSDLLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLIEKLCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRMANALS 322
            +++ LGL + ++ AL   G  +P+ +Q   V  VL+G  VV+ + TGSGKT +YL+PL++ L     D        +P  PRA  +VLCP   L EQV R+A ++S
Sbjct:  111 SFEELGLGEEVMAALGEMGISKPTEIQCVGVPAVLAGTSVVLGSHTGSGKTLAYLLPLVQLL---RRDEAMLGMSMKPRRPRA--VVLCPTRELTEQVFRVAKSIS 211          
BLAST of CX295650 vs. ExPASy Swiss-Prot
Match: RH39_ARATH (DEAD-box ATP-dependent RNA helicase 39 OS=Arabidopsis thaliana GN=RH39 PE=2 SV=2)

HSP 1 Score: 68.5514 bits (166), Expect = 1.161e-11
Identity = 41/121 (33.88%), Postives = 68/121 (56.20%), Query Frame = 2
Query:    8 WKSLGLSDLLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLIEKLCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRMANALSADNGEPLVRAVAVCGG 370
            ++ LGLS+ ++ AL+      P+ +Q   +  V+  K VV+ + TGSGKT +YL+P+++     L   + +N  K+  P R  ++VLCP   L EQV R+A ++S        R++ V GG
Sbjct:  114 FQELGLSEEVMGALQELNIEVPTEIQCIGIPAVMERKSVVLGSHTGSGKTLAYLLPIVQ-----LMREDEANLGKKTKPRRPRTVVLCPTRELSEQVYRVAKSIS---HHARFRSILVSGG 226          
BLAST of CX295650 vs. ExPASy Swiss-Prot
Match: RH50_ORYSJ (DEAD-box ATP-dependent RNA helicase 50 OS=Oryza sativa subsp. japonica GN=Os03g0108600 PE=2 SV=2)

HSP 1 Score: 68.1662 bits (165), Expect = 1.517e-11
Identity = 42/121 (34.71%), Postives = 66/121 (54.55%), Query Frame = 2
Query:    5 TWKSLGLSDLLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLIEKLCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRMANALSADNGEPLVRAVAVCG 367
            ++K +G SD ++ AL + GF RPS +QA +  PVL GK  +I  ++GSGKT +YL P+++ L     +  + +S + P       +VL P   L  QV+    ++S  +G P    VA  G
Sbjct:  241 SFKEIGCSDEILGALRSFGFPRPSHIQAMAYRPVLEGKSCIIGDQSGSGKTLAYLCPVVQNLRKEEVEGLHRSSPRNPR-----VVVLTPTAELASQVLNNCRSIS-KSGVPFRSMVATGG 355          
BLAST of CX295650 vs. ExPASy Swiss-Prot
Match: DBP10_SCHPO (ATP-dependent RNA helicase dbp10 OS=Schizosaccharomyces pombe GN=dbp10 PE=1 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 1.981e-11
Identity = 43/121 (35.54%), Postives = 69/121 (57.02%), Query Frame = 2
Query:    8 WKSLGLSDLLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLIEKLCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRMANALSADNGEPLVRAVAVCGG 370
            ++S+GL+  L+RA+   GF  P+ +Q  ++  +L G+DVV  A TGSGKT ++++P+IE L + L    NSN+          +L+L PN  L  Q V++    S       +R+VA+ GG
Sbjct:   71 FQSMGLNQTLLRAIFKKGFKAPTPIQRKTIPLLLEGRDVVGMARTGSGKTAAFVIPMIEHLKSTLA---NSNT---------RALILSPNRELALQTVKVVKDFSKGTD---LRSVAIVGG 176          
BLAST of CX295650 vs. ExPASy Swiss-Prot
Match: MAK5_SCLS1 (ATP-dependent RNA helicase mak5 OS=Sclerotinia sclerotiorum (strain ATCC 18683 / 1980 / Ss-1) GN=mak5 PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 2.587e-11
Identity = 42/121 (34.71%), Postives = 59/121 (48.76%), Query Frame = 2
Query:    8 WKSLGLSDLLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLIEKLCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRMANALSADNGEPLVRAVAVCGG 370
            W  L LS   + AL   GF +P+ +Q+ ++  VL+G DVV  A TGSGKT ++ +P++EK     G+ +     K   PP A  L+L P   L  Q+      L    G P    VA   G
Sbjct:  215 WVELDLSSNTLMALSKMGFSKPTPIQSEAIPEVLAGHDVVGKASTGSGKTLAFGIPIVEKWLEVYGELDEDELKKSTRPPTA--LILSPTRELAHQLTEHITTLC--KGMPTSPYVAAVTG 331          
The following BLAST results are available for this feature:
BLAST of CX295650 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 15
Match NameE-valueIdentityDescription
RH22_ARATH6.761e-3658.06DEAD-box ATP-dependent RNA helicase 22 OS=Arabidop... [more]
RH22_ORYSJ2.405e-3358.68DEAD-box ATP-dependent RNA helicase 22 OS=Oryza sa... [more]
RH16_ARATH2.117e-1340.00DEAD-box ATP-dependent RNA helicase 16 OS=Arabidop... [more]
DDX56_DICDI3.610e-1340.57Probable ATP-dependent RNA helicase ddx56 OS=Dicty... [more]
RH50_ARATH1.050e-1236.07DEAD-box ATP-dependent RNA helicase 50 OS=Arabidop... [more]
RH39_ORYSJ3.992e-1238.68DEAD-box ATP-dependent RNA helicase 39 OS=Oryza sa... [more]
RH39_ARATH1.161e-1133.88DEAD-box ATP-dependent RNA helicase 39 OS=Arabidop... [more]
RH50_ORYSJ1.517e-1134.71DEAD-box ATP-dependent RNA helicase 50 OS=Oryza sa... [more]
DBP10_SCHPO1.981e-1135.54ATP-dependent RNA helicase dbp10 OS=Schizosaccharo... [more]
MAK5_SCLS12.587e-1134.71ATP-dependent RNA helicase mak5 OS=Sclerotinia scl... [more]

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Properties
Property NameValue
Genbank descriptionC05074D11SK DroRLeaf1 Citrus clementina cDNA clone C05074D11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX295650 ID=CX295650; Name=CX295650; organism=Citrus clementina; type=EST; length=410bp
TGTCACATGGAAGTCTCTAGGCTTATCCGATCTCCTCATTCGTGCTCTCG
AAAATTCCGGCTTTGGGAGACCCTCTATTGTTCAGGCTGCTTCCGTAGGA
CCTGTTCTTTCAGGAAAAGATGTTGTGATTGCGGCAGAGACTGGTAGCGG
TAAAACACATAGCTACCTCGTCCCTCTGATTGAAAAGCTGTGCACTGCAT
TGGGTGATTCGGAGAATTCCAATTCTGATAAAGAGCCGACTCCTCCCCGT
GCACCTTCTCTAGTTCTTTGTCCAAATGTAGTACTTTGTGAACAAGTGGT
TCGAATGGCTAATGCTCTTTCTGCAGATAATGGTGAACCACTTGTACGAG
CTGTAGCTGTATGTGGAGGACAGGTTCTAATGCTCTAATCTTTCTTGATA
CTGATACACT
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