CX295650
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of CX295650 vs. ExPASy Swiss-Prot
Match: RH22_ARATH (DEAD-box ATP-dependent RNA helicase 22 OS=Arabidopsis thaliana GN=RH22 PE=2 SV=1) HSP 1 Score: 149.058 bits (375), Expect = 6.761e-36 Identity = 72/124 (58.06%), Postives = 92/124 (74.19%), Query Frame = 2 Query: 2 VTWKSLGLSDLLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLIEKLCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRMANALSADNGEPLVRAVAVCGGQ 373 V+WKSLGLSD + AL +SGF RPS+ QA + +LSGKDV++AAETGSGKTH YL P+I++L DSE +N ++ P P + SL+LCPNV+LCEQVVRM N L ++G PL+R AVCG Q Sbjct: 80 VSWKSLGLSDNVSIALRDSGFDRPSLTQAVCIPSILSGKDVIVAAETGSGKTHGYLAPIIDQLTNTALDSEVTNREERPFPLKNISLILCPNVMLCEQVVRMVNGLVDEDGNPLLRVEAVCGSQ 203
BLAST of CX295650 vs. ExPASy Swiss-Prot
Match: RH22_ORYSJ (DEAD-box ATP-dependent RNA helicase 22 OS=Oryza sativa subsp. japonica GN=Os09g0383400 PE=2 SV=2) HSP 1 Score: 140.584 bits (353), Expect = 2.405e-33 Identity = 71/121 (58.68%), Postives = 89/121 (73.55%), Query Frame = 2 Query: 5 TWKSLGLSDLLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLIEKLCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRMANALSADNGEPLVRAVAVCG 367 +W+SLG+SD L AL +G RPS+VQAA + VL+ DV++AAETGSGKTH YLVPLIEKLC+ +E+ NS + +LVLCPNV+LCEQVVRMAN+L ++GEPL A AVCG Sbjct: 83 SWESLGVSDRLASALHGAGLARPSLVQAACIPHVLTTNDVIVAAETGSGKTHGYLVPLIEKLCSKSISAEDGNSQDVTSGSPNIALVLCPNVMLCEQVVRMANSLVDESGEPLKSAAAVCG 203
BLAST of CX295650 vs. ExPASy Swiss-Prot
Match: RH16_ARATH (DEAD-box ATP-dependent RNA helicase 16 OS=Arabidopsis thaliana GN=RH16 PE=2 SV=1) HSP 1 Score: 74.3294 bits (181), Expect = 2.117e-13 Identity = 42/105 (40.00%), Postives = 67/105 (63.81%), Query Frame = 2 Query: 5 TWKSLGLSDLLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLIEKLCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRMANAL 319 +++ LGL LIRAL G +P+++Q +++ +L GKDVV A+TGSGKT +YL+PL++KL +A +S S K+ P + +L P+ LC+QV ++L Sbjct: 47 SFEELGLDSRLIRALTKKGIEKPTLIQQSAIPYILEGKDVVARAKTGSGKTLAYLLPLLQKLFSA-----DSVSKKKLAP---SAFILVPSRELCQQVYTEVSSL 143
BLAST of CX295650 vs. ExPASy Swiss-Prot
Match: DDX56_DICDI (Probable ATP-dependent RNA helicase ddx56 OS=Dictyostelium discoideum GN=ddx56 PE=3 SV=1) HSP 1 Score: 73.559 bits (179), Expect = 3.610e-13 Identity = 43/106 (40.57%), Postives = 63/106 (59.43%), Query Frame = 2 Query: 5 TWKSLGLSDLLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLIEKLCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRMANALS 322 T++S+GL + ++RAL+ GF PS+VQ+ S+ L GKD++ A TGSGKT +Y +P+I+K+ A E SN ++VL P LCEQV N +S Sbjct: 24 TFESMGLDNRILRALKKMGFQNPSLVQSKSIPLSLQGKDILAKARTGSGKTAAYSIPIIQKVLMA---KEKSNI------KGVKAVVLVPTRELCEQVKNHFNQVS 120
BLAST of CX295650 vs. ExPASy Swiss-Prot
Match: RH50_ARATH (DEAD-box ATP-dependent RNA helicase 50 OS=Arabidopsis thaliana GN=RH50 PE=2 SV=2) HSP 1 Score: 72.0182 bits (175), Expect = 1.050e-12 Identity = 44/122 (36.07%), Postives = 68/122 (55.74%), Query Frame = 2 Query: 5 TWKSLGLSDLLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLIEKLCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRMANALSADNGEPLVRAVAVCGG 370 T+ +G S+ +++AL+ F RP+ +QA + PV+ GK +IA ++GSGKT +YLVP+I++L + +S P PR +VL P L QV +AN S R++ V GG Sbjct: 375 TFAEIGCSEDMMKALKEQNFDRPAHIQAMAFSPVIDGKSCIIADQSGSGKTLAYLVPVIQRL---REEELQGHSKSSPGCPRV--IVLVPTAELASQV--LANCRSISKSGVPFRSMVVTGG 489
BLAST of CX295650 vs. ExPASy Swiss-Prot
Match: RH39_ORYSJ (DEAD-box ATP-dependent RNA helicase 39 OS=Oryza sativa subsp. japonica GN=Os01g0184500 PE=2 SV=1) HSP 1 Score: 70.0922 bits (170), Expect = 3.992e-12 Identity = 41/106 (38.68%), Postives = 62/106 (58.49%), Query Frame = 2 Query: 5 TWKSLGLSDLLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLIEKLCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRMANALS 322 +++ LGL + ++ AL G +P+ +Q V VL+G VV+ + TGSGKT +YL+PL++ L D +P PRA +VLCP L EQV R+A ++S Sbjct: 111 SFEELGLGEEVMAALGEMGISKPTEIQCVGVPAVLAGTSVVLGSHTGSGKTLAYLLPLVQLL---RRDEAMLGMSMKPRRPRA--VVLCPTRELTEQVFRVAKSIS 211
BLAST of CX295650 vs. ExPASy Swiss-Prot
Match: RH39_ARATH (DEAD-box ATP-dependent RNA helicase 39 OS=Arabidopsis thaliana GN=RH39 PE=2 SV=2) HSP 1 Score: 68.5514 bits (166), Expect = 1.161e-11 Identity = 41/121 (33.88%), Postives = 68/121 (56.20%), Query Frame = 2 Query: 8 WKSLGLSDLLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLIEKLCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRMANALSADNGEPLVRAVAVCGG 370 ++ LGLS+ ++ AL+ P+ +Q + V+ K VV+ + TGSGKT +YL+P+++ L + +N K+ P R ++VLCP L EQV R+A ++S R++ V GG Sbjct: 114 FQELGLSEEVMGALQELNIEVPTEIQCIGIPAVMERKSVVLGSHTGSGKTLAYLLPIVQ-----LMREDEANLGKKTKPRRPRTVVLCPTRELSEQVYRVAKSIS---HHARFRSILVSGG 226
BLAST of CX295650 vs. ExPASy Swiss-Prot
Match: RH50_ORYSJ (DEAD-box ATP-dependent RNA helicase 50 OS=Oryza sativa subsp. japonica GN=Os03g0108600 PE=2 SV=2) HSP 1 Score: 68.1662 bits (165), Expect = 1.517e-11 Identity = 42/121 (34.71%), Postives = 66/121 (54.55%), Query Frame = 2 Query: 5 TWKSLGLSDLLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLIEKLCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRMANALSADNGEPLVRAVAVCG 367 ++K +G SD ++ AL + GF RPS +QA + PVL GK +I ++GSGKT +YL P+++ L + + +S + P +VL P L QV+ ++S +G P VA G Sbjct: 241 SFKEIGCSDEILGALRSFGFPRPSHIQAMAYRPVLEGKSCIIGDQSGSGKTLAYLCPVVQNLRKEEVEGLHRSSPRNPR-----VVVLTPTAELASQVLNNCRSIS-KSGVPFRSMVATGG 355
BLAST of CX295650 vs. ExPASy Swiss-Prot
Match: DBP10_SCHPO (ATP-dependent RNA helicase dbp10 OS=Schizosaccharomyces pombe GN=dbp10 PE=1 SV=1) HSP 1 Score: 67.781 bits (164), Expect = 1.981e-11 Identity = 43/121 (35.54%), Postives = 69/121 (57.02%), Query Frame = 2 Query: 8 WKSLGLSDLLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLIEKLCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRMANALSADNGEPLVRAVAVCGG 370 ++S+GL+ L+RA+ GF P+ +Q ++ +L G+DVV A TGSGKT ++++P+IE L + L NSN+ +L+L PN L Q V++ S +R+VA+ GG Sbjct: 71 FQSMGLNQTLLRAIFKKGFKAPTPIQRKTIPLLLEGRDVVGMARTGSGKTAAFVIPMIEHLKSTLA---NSNT---------RALILSPNRELALQTVKVVKDFSKGTD---LRSVAIVGG 176
BLAST of CX295650 vs. ExPASy Swiss-Prot
Match: MAK5_SCLS1 (ATP-dependent RNA helicase mak5 OS=Sclerotinia sclerotiorum (strain ATCC 18683 / 1980 / Ss-1) GN=mak5 PE=3 SV=1) HSP 1 Score: 67.3958 bits (163), Expect = 2.587e-11 Identity = 42/121 (34.71%), Postives = 59/121 (48.76%), Query Frame = 2 Query: 8 WKSLGLSDLLIRALENSGFGRPSIVQAASVGPVLSGKDVVIAAETGSGKTHSYLVPLIEKLCTALGDSENSNSDKEPTPPRAPSLVLCPNVVLCEQVVRMANALSADNGEPLVRAVAVCGG 370 W L LS + AL GF +P+ +Q+ ++ VL+G DVV A TGSGKT ++ +P++EK G+ + K PP A L+L P L Q+ L G P VA G Sbjct: 215 WVELDLSSNTLMALSKMGFSKPTPIQSEAIPEVLAGHDVVGKASTGSGKTLAFGIPIVEKWLEVYGELDEDELKKSTRPPTA--LILSPTRELAHQLTEHITTLC--KGMPTSPYVAAVTG 331 The following BLAST results are available for this feature:
BLAST of CX295650 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 15
Pagesback to topProperties
Sequences
The
following sequences are available for this feature:
EST sequence >CX295650 ID=CX295650; Name=CX295650; organism=Citrus clementina; type=EST; length=410bpback to top |