CX295651

Overview
NameCX295651
Unique NameCX295651
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length699
Libraries
Library NameType
DroRLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig12092 contig Ccv1_Contig12092:880..1578. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CX295651 vs. ExPASy Swiss-Prot
Match: RU2A_ARATH (U2 small nuclear ribonucleoprotein A' OS=Arabidopsis thaliana GN=At1g09760 PE=2 SV=2)

HSP 1 Score: 85.8853 bits (211), Expect = 2.276e-16
Identity = 52/105 (49.52%), Postives = 61/105 (58.10%), Query Frame = 3 
Query:    3 KLKSLRVLDFKKVKNKERXXXXXXXXXXXXXXXXXXXXXXTLMXXXXXXXXXXXXQQTPKVVAPTPEQIIAIKAAIVNSQTLEEVARLEEVLKSGQLPADLKIPD 317
            KLKSLRVLDF K+K KER                       +              +TPKVVAPT EQI+AIKAAI+NSQT+EE+ARLE+ LK GQ+PA L IPD
Sbjct:  138 KLKSLRVLDFIKIKAKERAEAASLFSSKEAEEEVKKVSREEVKKVSETAENP----ETPKVVAPTAEQILAIKAAIINSQTIEEIARLEQALKFGQVPAGLIIPD 238
The following BLAST results are available for this feature:
BLAST of CX295651 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
RU2A_ARATH2.276e-1649.52U2 small nuclear ribonucleoprotein A' OS=Arabidops... [more]
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Properties
Property NameValue
Genbank descriptionC05074D12SK DroRLeaf1 Citrus clementina cDNA clone C05074D12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX295651 ID=CX295651; Name=CX295651; organism=Citrus clementina; type=EST; length=699bp
ACAAGCTGAAATCTCTCCGTGTTTTGGATTTCAAGAAGGTGAAAAACAAG
GAAAGAATGGAAGCAGCAAGTCTGTTTGCCTCAGAAGAAATGGAAGAGGA
GGCTAAGAAGGAATCTATGAAGACATTGATGCCAGTTGAGGTTCCGAATG
TTTCAGAAGAAGAGGAACAACAAACTCCAAAAGTGGTTGCCCCCACTCCT
GAGCAGATTATAGCCATCAAGGCTGCTATTGTGAATTCTCAGACACTTGA
AGAGGTTGCAAGACTTGAAGAGGTTCTGAAGTCAGGTCAGCTTCCTGCAG
ATTTGAAAATTCCGGACTATGATTCTGGCAGCAAGGATGTGAAAGAAAAT
GATGAGAAAATGGTACCTGACGTTGAAAATGAGGCTGATGTTGAACCAAA
CAATGTGGAAAACCAGAAGAATGATGAACTTGCTGCGATGGAACAGGACT
AGAAGGGGTGATTCATGTGCAAGTCCATCTGAAAGCATCCAAAAGTCCAT
CCGAAAGCTTCTCACTTGTGTGCCTGCACCCATATACCAGATCTAAGTTC
TGTTTAGACTTTTTCTTCCCCCCTCATTTCCTCCTCTACCACATCTGCCT
TGTGGTGACAGGAACTCAAAATGGGAGGGGTGCTTGCTCATGCAAATGTA
GGCAGGGGTTTTGTATACTTCATTTGTTAGGAATTTTCCTATTAGTTGC
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