CX295677

Overview
NameCX295677
Unique NameCX295677
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length731
Libraries
Library NameType
DroRLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig12136 contig Ccv1_Contig12136:1..725. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX295677 vs. ExPASy Swiss-Prot
Match: FAT2_SCHPO (Putative peroxisomal-coenzyme A synthetase OS=Schizosaccharomyces pombe GN=SPCC1827.03c PE=1 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 2.010e-18
Identity = 63/185 (34.05%), Postives = 89/185 (48.11%), Query Frame = 3
Query:  150 SSKRALSVSGKFDLTYSRIHELVERAASRLVAAGINAGDVVALTFPNTVEFVIMFLAVIRXXXXXXXXXXXYTPDEFEFYLSDSESKLLLTP---AEGNXXXXXXXSKLNISHATATLLDADSELTLSLAHSE-SDTNAISKL-TNDPSDVALFLHTSGTTSRPKGVPLTQNNLAASVSNIKSVY 689
            S++  ++ S   +L++S +   +     ++ + GI  GD V +  PN +EFV+ F AV             Y   EFEFY+ D +SKL++ P      N        KL++  A A L        + + H E +  NA   L    P DV L LHTSGTT RPK VPLT  NL  S+ NI + Y
Sbjct:   15 SARALVAPSLNAELSFSELRIAIMDLQRQIASLGIKVGDPVNIAIPNGLEFVVAFYAVSWQRAICGPLNSNYKQSEFEFYIDDLKSKLVIVPEGSVAANTPAVRAAKKLSV--AVAELAWCPKSRLVRIVHFEGAKINAPQPLGLPQPDDVMLVLHTSGTTGRPKVVPLTHKNLCRSIHNITTSY 197          
BLAST of CX295677 vs. ExPASy Swiss-Prot
Match: PPSB_BACSU (Plipastatin synthase subunit B OS=Bacillus subtilis GN=ppsB PE=1 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.379e-11
Identity = 50/181 (27.62%), Postives = 80/181 (44.20%), Query Frame = 3
Query:  114 LIGLLNQVIDQFSSKRALSVSGKFDLTYSRIHELVERAASRLVAAGINAGDVVALTFPNTVEFVIMFLAVIRXXXXXXXXXXXYTPDEFEFYLSDSESKLLLTPAEGNXXXXXXXSKLNISHATATLLDADSELTLSLAHSESDTNAISKLTNDPSDVALFLHTSGTTSRPKGVPLTQNNL 656
            ++ L  + + Q+    A+ V G   LTY  ++E  ERAA+ L+  G+  GD+V L    + + +I  L++++           Y  +   F L+DS +KLLLT    N         L I       + A             D N    +T+ P   A  ++TSGTT +PKGV +   N+
Sbjct: 1502 IVSLFEKQVAQYPEHIAV-VCGHSQLTYRDLNEKAERAAAMLIKQGVRTGDIVGLMLDRSPDMIIGVLSILKAGGAYLPIDPEYPKERISFMLNDSGAKLLLTERGLNKPADYTGHILYIDECENNSIPA-------------DVNIEEIVTDQP---AYVIYTSGTTGQPKGVIVEHRNV 1665          
BLAST of CX295677 vs. ExPASy Swiss-Prot
Match: LCFB_BACSU (Long-chain-fatty-acid--CoA ligase OS=Bacillus subtilis GN=lcfB PE=2 SV=2)

HSP 1 Score: 69.3218 bits (168), Expect = 2.379e-11
Identity = 51/194 (26.29%), Postives = 91/194 (46.91%), Query Frame = 3
Query:  138 IDQFSSKRALSVSGKFD---LTYSRIHELVERAASRLVAAGINAGDVVALTFPNTVEFVIMFLAVIRXXXXXXXXXXXYTPDEFEFYLSDSESKLL-----LTPAEGNXXXXXXXSKLNISHAT--ATLLDADSELTLSLAHSESDTNAISKLTND----PSDVALFLHTSGTTSRPKGVPLTQNNLAASVSNI 677
            +++ +S++  S++ +F    +TY  ++E ++R A  L  AG+  GD +AL   N+ +F+I F   ++           YTP E  + L++ + K +     L P   +        +L I   T  A    AD E+ + +          S    +    P D A+ L+TSGTT +PKG  LT  NL ++ +++
Sbjct:    7 LEETASEKPDSIACRFKDHMMTYQELNEYIQRFADGLQEAGMEKGDHLALLLGNSPDFIIAFFGALKAGIVVVPINPLYTPTEIGYMLTNGDVKAIVGVSQLLPLYESMHESLPKVELVILCQTGEAEPEAADPEVRMKMTTFAKILRPTSAAKQNQEPVPDDTAVILYTSGTTGKPKGAMLTHQNLYSNANDV 200          
BLAST of CX295677 vs. ExPASy Swiss-Prot
Match: TYCC_BREPA (Tyrocidine synthase 3 OS=Brevibacillus parabrevis GN=tycC PE=1 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 5.301e-11
Identity = 51/182 (28.02%), Postives = 81/182 (44.51%), Query Frame = 3
Query:  111 TLIGLLNQVIDQFSSKRALSVSGKFDLTYSRIHELVERAASRLVAAGINAGDVVALTFPNTVEFVIMFLAVIRXXXXXXXXXXXYTPDEFEFYLSDSESKLLLTPAEGNXXXXXXXSKLNISHATATLLDADSELTLSLAHSESDTNAISKLTNDPSDVALFLHTSGTTSRPKGVPLTQNNL 656
            TL  L  + +D+   + AL  S +  LTYS ++E   R A  L A G+    +VA+    + E VI  L +++           Y  +  ++ L DS + LLL+ A              +S      LD ++EL   L+ S           N P+D+A  ++TSGTT +PKGV +    +
Sbjct: 5657 TLHQLFEEQVDKTPDQAALLFSEQ-SLTYSELNERANRLARVLRAKGVGPDRLVAIMAERSPEMVIGILGILKAGGAYVPVDPGYPQERIQYLLEDSNAALLLSQAH------LLPLLAQVSSELPECLDLNAELDAGLSGSNLPA------VNQPTDLAYVIYTSGTTGKPKGVMIPHQGI 5825          
BLAST of CX295677 vs. ExPASy Swiss-Prot
Match: MYCA_BACSU (Mycosubtilin synthase subunit A OS=Bacillus subtilis GN=mycA PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 9.042e-11
Identity = 48/173 (27.75%), Postives = 79/173 (45.66%), Query Frame = 3
Query:  171 VSGKFDLTYSRIHELVERAASRLVAAGINAGDVVALTFPNTVEFVIMFLAVIRXXXXXXXXXXXYTPDEFEFYLSDSESKLLLTPAEGNXXXXXXXSKLNISHATATLLDADSELTLSLAHSESDTNAISKLTNDPSDVALFLHTSGTTSRPKGVPLTQNNLAASVSNIKSVY 689
            + G    TY +++E V + A  L   G+ A   VA+  P+ +E ++  LAV++           Y  D  ++ L DSE+K++L   +          K     A   LLD +S      ++ E  +N   + T   +D+A  ++TSG+T  PKGV +    LA  +   K VY
Sbjct: 2960 IFGNERCTYGQLNERVNQLARTLRTKGVQADQFVAIICPHRIELIVGILAVLKAGGAYVPIDPEYPEDRIQYMLKDSEAKIVLAQLD--------LHKHLTFDADVVLLDEES------SYHEDRSNL--EPTCGANDLAYMIYTSGSTGNPKGVLIEHRGLANYIEWAKEVY 3116          
The following BLAST results are available for this feature:
BLAST of CX295677 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
FAT2_SCHPO2.010e-1834.05Putative peroxisomal-coenzyme A synthetase OS=Schi... [more]
PPSB_BACSU2.379e-1127.62Plipastatin synthase subunit B OS=Bacillus subtili... [more]
LCFB_BACSU2.379e-1126.29Long-chain-fatty-acid--CoA ligase OS=Bacillus subt... [more]
TYCC_BREPA5.301e-1128.02Tyrocidine synthase 3 OS=Brevibacillus parabrevis ... [more]
MYCA_BACSU9.042e-1127.75Mycosubtilin synthase subunit A OS=Bacillus subtil... [more]
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Properties
Property NameValue
Genbank descriptionC05074G03SK DroRLeaf1 Citrus clementina cDNA clone C05074G03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX295677 ID=CX295677; Name=CX295677; organism=Citrus clementina; type=EST; length=731bp
GATTCGGCCGAGGCTCTTCTTTACATATATCGGTGCTCTCATCTCTTTTA
TCGATCAAACAAACGCCGAAAATTAAAAAAAAAAAAAATCAAATCAAATG
GGAGGGCGTTACGTTGATTGGATTGCTGAATCAGGTGATCGATCAATTTT
CTTCGAAGAGAGCTCTGTCAGTTTCGGGGAAATTTGATTTAACGTACTCA
AGGATTCATGAACTCGTCGAACGTGCCGCGTCGAGGCTTGTTGCGGCCGG
AATTAACGCCGGCGACGTCGTTGCACTCACCTTCCCAAACACCGTCGAGT
TTGTAATTATGTTCTTGGCCGTAATTCGAGCACGAGCCACAGCTGCGCCG
CTCAACGCCGCTTACACGCCAGATGAGTTTGAGTTCTATCTATCGGACTC
GGAGTCAAAGCTCTTGTTGACCCCAGCTGAAGGAAACGCGGCGGCTCAAG
CCGCGGCTTCAAAGCTCAACATCTCACACGCCACGGCTACTCTCCTAGAC
GCCGACTCGGAACTCACTCTTTCCCTCGCTCACTCCGAGTCAGACACCAA
CGCGATCAGCAAACTCACCAACGACCCGTCTGACGTGGCGCTCTTTTTGC
ACACTTCGGGCACCACGAGCCGTCCTAAAGGCGTGCCGCTGACTCAGAAT
AATTTGGCTGCTTCTGTTAGCAACATCAAATCGGTTTATAACTCCCGAGT
CGGACTCGACGTTATAGTCTCCCCTATTCAC
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